Wall clock time and date at job start Tue Mar 31 2020 06:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46823 * 2 1 4 4 C 1.50698 * 109.47144 * 239.99973 * 2 1 3 5 5 H 1.07995 * 120.00082 * 236.99916 * 4 2 1 6 6 C 1.37880 * 119.99695 * 57.00413 * 4 2 1 7 7 N 1.31513 * 120.00358 * 5.54486 * 6 4 2 8 8 Si 1.86804 * 119.99507 * 185.54110 * 6 4 2 9 9 H 1.48492 * 109.46963 * 85.00369 * 8 6 4 10 10 H 1.48503 * 109.46574 * 205.00031 * 8 6 4 11 11 H 1.48492 * 109.47386 * 324.99646 * 8 6 4 12 12 C 1.52995 * 109.47353 * 119.99834 * 2 1 3 13 13 N 1.46506 * 109.47131 * 300.00054 * 12 2 1 14 14 C 1.34783 * 119.99797 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00149 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99420 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99373 * 180.02562 * 16 14 13 18 18 C 1.54069 * 108.87775 * 277.97444 * 17 16 14 19 19 C 1.54061 * 112.81619 * 197.51036 * 18 17 16 20 20 C 1.50480 * 112.50114 * 318.27927 * 19 18 17 21 21 C 1.54238 * 108.51504 * 94.15311 * 20 19 18 22 22 C 1.45547 * 112.40757 * 280.01201 * 21 20 19 23 23 C 1.50474 * 108.87449 * 154.99797 * 17 16 14 24 24 H 1.09000 * 109.46921 * 293.93308 * 1 2 3 25 25 H 1.08994 * 109.47660 * 53.93436 * 1 2 3 26 26 H 1.09002 * 109.46709 * 173.93903 * 1 2 3 27 27 H 1.08992 * 109.47064 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47029 * 300.00251 * 3 2 1 29 29 H 1.09003 * 109.46860 * 59.99649 * 3 2 1 30 30 H 0.97002 * 120.00052 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47283 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47284 * 59.99973 * 12 2 1 33 33 H 0.96998 * 120.00248 * 0.02562 * 13 12 2 34 34 H 0.97000 * 120.00108 * 0.02562 * 16 14 13 35 35 H 1.08996 * 108.77086 * 36.48598 * 17 16 14 36 36 H 1.09000 * 108.81061 * 318.36907 * 18 17 16 37 37 H 1.08996 * 108.81323 * 76.75468 * 18 17 16 38 38 H 1.09004 * 108.87481 * 197.50805 * 19 18 17 39 39 H 1.08999 * 108.88240 * 79.06123 * 19 18 17 40 40 H 1.09006 * 109.62418 * 334.44738 * 20 19 18 41 41 H 1.09000 * 109.63209 * 213.86342 * 20 19 18 42 42 H 1.09004 * 108.89665 * 40.76797 * 21 20 19 43 43 H 1.08998 * 108.89263 * 159.35615 * 21 20 19 44 44 H 1.09001 * 108.89120 * 182.69156 * 22 21 20 45 45 H 1.08995 * 108.89590 * 301.18303 * 22 21 20 46 46 H 1.09001 * 109.62904 * 95.21491 * 23 17 16 47 47 H 1.09002 * 109.78828 * 334.73289 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6926 -1.5593 -1.1321 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3361 -4.2322 10 1 2.1707 -0.3438 -5.1775 11 1 3.4932 -1.8326 -3.7938 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8770 -0.4913 3.6696 15 8 2.5753 -1.4804 3.7811 16 7 1.4273 0.1438 4.7700 17 6 1.7813 -0.3567 6.1005 18 6 0.8294 -1.5110 6.4684 19 6 0.8219 -1.8212 7.9775 20 6 2.2007 -1.7879 8.5792 21 6 2.4474 -0.3809 9.1609 22 6 2.8207 0.5849 8.1379 23 6 1.7130 0.7812 7.0827 24 1 -0.3633 0.4169 0.9393 25 1 -0.3634 0.6049 -0.8306 26 1 -0.3633 -1.0220 -0.1085 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 0.6650 1.1259 -3.4874 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7488 1.2493 33 1 0.9937 0.7579 2.3565 34 1 0.8693 0.9322 4.6809 35 1 2.8023 -0.7371 6.0720 36 1 -0.1814 -1.2451 6.1591 37 1 1.1376 -2.4063 5.9286 38 1 0.3937 -2.8117 8.1317 39 1 0.1976 -1.0862 8.4856 40 1 2.9417 -2.0006 7.8085 41 1 2.2715 -2.5303 9.3741 42 1 1.5378 -0.0385 9.6545 43 1 3.2481 -0.4392 9.8982 44 1 3.0271 1.5427 8.6154 45 1 3.7259 0.2387 7.6393 46 1 0.7386 0.7853 7.5712 47 1 1.8659 1.7270 6.5629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332057191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:40 Heat of formation + Delta-G solvation = -59.409318 kcal Electronic energy + Delta-G solvation = -23104.098568 eV Core-core repulsion = 19899.688271 eV Total energy + Delta-G solvation = -3204.410296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02999 -38.56239 -36.38314 -34.38888 -33.19965 -32.47560 -31.08371 -29.89730 -25.69797 -25.61247 -25.11083 -24.93914 -23.72333 -21.02691 -20.42083 -19.47787 -18.71816 -17.94894 -16.49980 -15.78655 -15.57043 -14.85327 -14.82387 -14.59886 -14.37792 -14.00482 -13.70164 -13.46577 -13.21711 -12.86748 -12.81955 -12.31498 -12.16643 -12.06597 -11.50355 -11.41305 -11.17463 -11.09076 -10.90314 -10.83006 -10.67263 -10.55882 -10.54171 -10.37994 -10.32666 -10.19185 -9.68124 -9.58816 -9.27079 -8.85995 -8.76540 -8.37968 -8.12685 -6.00321 -4.08838 3.16911 3.30775 3.37024 3.41347 3.71841 4.40514 4.41103 4.51393 4.71091 4.86254 4.95430 4.99682 5.07449 5.21410 5.26840 5.26951 5.39348 5.58534 5.68164 5.81231 5.85000 5.92066 5.97596 6.03334 6.11326 6.16591 6.22655 6.29933 6.35848 6.40942 6.54810 6.80647 6.84646 6.85701 6.95067 7.06509 7.15565 7.36601 7.48067 7.59026 7.73044 8.02697 8.15019 8.41210 8.56518 8.90980 9.13158 9.56432 11.01765 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040940 B = 0.003083 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.761925 B = 9080.079294 C = 9262.735425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.151 3.849 13 N -0.735 5.735 14 C 0.696 3.304 15 O -0.600 6.600 16 N -0.753 5.753 17 C 0.168 3.832 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.126 4.126 24 H 0.006 0.994 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.391 0.609 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 1.735 20.743 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.028 3.972 13 N -0.389 5.389 14 C 0.396 3.604 15 O -0.479 6.479 16 N -0.409 5.409 17 C 0.063 3.937 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.164 4.164 24 H 0.025 0.975 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.791 0.922 20.648 20.683 hybrid contribution -0.358 0.211 -1.003 1.085 sum -1.149 1.133 19.645 19.711 Atomic orbital electron populations 1.21790 0.97786 1.00088 0.98864 1.18357 0.92735 0.92755 0.90617 1.21835 0.98571 0.98364 0.99900 1.20985 1.29277 1.14319 0.89956 0.92413 1.24875 0.95012 0.94773 0.98784 1.69829 1.37941 1.21437 1.23236 0.86599 0.79058 0.79915 0.82375 1.20638 1.21363 1.19951 1.21544 0.97794 0.95395 0.82480 1.45527 1.55640 1.33045 1.04690 1.16128 0.80467 0.83027 0.80746 1.90867 1.43291 1.27660 1.86091 1.45449 1.57405 1.33075 1.04964 1.20578 0.99680 0.93143 0.80326 1.22346 0.99673 0.99266 0.95565 1.21290 0.97197 1.01337 0.95308 1.21398 0.97805 0.96546 1.00263 1.20507 1.01544 0.95282 0.98181 1.20420 0.98591 0.99466 0.96870 1.21665 0.99827 0.98092 0.96781 0.97510 0.90105 0.95238 0.95493 0.89678 0.97624 0.93052 0.93069 0.93039 0.77289 0.77531 0.89897 0.92137 0.91392 0.92332 0.92236 0.91213 0.92037 0.92212 0.92377 0.92033 0.91766 0.91100 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.03 37.16 0.30 -2.61 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 4 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 5 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.80 9.45 55.43 0.52 -23.28 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.73 -13.48 4.91 -65.22 -0.32 -13.80 16 14 C 0.70 12.64 8.48 -86.91 -0.74 11.90 16 15 O -0.60 -13.22 16.01 5.29 0.08 -13.13 16 16 N -0.75 -10.05 4.95 -59.37 -0.29 -10.34 16 17 C 0.17 1.98 1.94 -68.63 -0.13 1.85 16 18 C -0.13 -1.49 5.37 -25.62 -0.14 -1.63 16 19 C -0.11 -1.02 5.31 -27.44 -0.15 -1.16 16 20 C -0.12 -1.04 5.61 -27.34 -0.15 -1.20 16 21 C -0.12 -0.88 5.26 -29.60 -0.16 -1.03 16 22 C -0.12 -0.93 5.26 -29.60 -0.16 -1.09 16 23 C -0.13 -1.10 5.17 -27.35 -0.14 -1.24 16 24 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 25 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 29 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 6.45 6.17 -40.82 -0.25 6.20 16 34 H 0.39 4.19 8.49 -40.82 -0.35 3.84 16 35 H 0.08 1.17 6.08 -51.93 -0.32 0.86 16 36 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.47 6.63 -51.93 -0.34 0.13 16 40 H 0.07 0.70 6.98 -51.93 -0.36 0.34 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.41 7.47 -51.93 -0.39 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.58 7.47 -51.93 -0.39 0.20 16 46 H 0.07 0.56 6.98 -51.93 -0.36 0.19 16 47 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -29.17 350.39 -9.65 -38.82 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.28 Total: 6.92 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.62 Total: -6.36 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.09 Total: -47.42 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.17 -9.65 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332057191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.587 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds