Wall clock time and date at job start Tue Mar 31 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46823 * 2 1 4 4 C 1.50698 * 109.47144 * 239.99973 * 2 1 3 5 5 H 1.07995 * 120.00082 * 236.99916 * 4 2 1 6 6 C 1.37880 * 119.99695 * 57.00413 * 4 2 1 7 7 N 1.31513 * 120.00358 * 5.54486 * 6 4 2 8 8 Si 1.86804 * 119.99507 * 185.54110 * 6 4 2 9 9 H 1.48492 * 109.46963 * 85.00369 * 8 6 4 10 10 H 1.48503 * 109.46574 * 205.00031 * 8 6 4 11 11 H 1.48492 * 109.47386 * 324.99646 * 8 6 4 12 12 C 1.52995 * 109.47353 * 119.99834 * 2 1 3 13 13 N 1.46506 * 109.47131 * 300.00054 * 12 2 1 14 14 C 1.34783 * 119.99797 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00149 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99420 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99373 * 180.02562 * 16 14 13 18 18 C 1.54069 * 108.87775 * 277.97444 * 17 16 14 19 19 C 1.54061 * 112.81619 * 197.51036 * 18 17 16 20 20 C 1.50480 * 112.50114 * 318.27927 * 19 18 17 21 21 C 1.54238 * 108.51504 * 94.15311 * 20 19 18 22 22 C 1.45547 * 112.40757 * 280.01201 * 21 20 19 23 23 C 1.50474 * 108.87449 * 154.99797 * 17 16 14 24 24 H 1.09000 * 109.46921 * 293.93308 * 1 2 3 25 25 H 1.08994 * 109.47660 * 53.93436 * 1 2 3 26 26 H 1.09002 * 109.46709 * 173.93903 * 1 2 3 27 27 H 1.08992 * 109.47064 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47029 * 300.00251 * 3 2 1 29 29 H 1.09003 * 109.46860 * 59.99649 * 3 2 1 30 30 H 0.97002 * 120.00052 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47283 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47284 * 59.99973 * 12 2 1 33 33 H 0.96998 * 120.00248 * 0.02562 * 13 12 2 34 34 H 0.97000 * 120.00108 * 0.02562 * 16 14 13 35 35 H 1.08996 * 108.77086 * 36.48598 * 17 16 14 36 36 H 1.09000 * 108.81061 * 318.36907 * 18 17 16 37 37 H 1.08996 * 108.81323 * 76.75468 * 18 17 16 38 38 H 1.09004 * 108.87481 * 197.50805 * 19 18 17 39 39 H 1.08999 * 108.88240 * 79.06123 * 19 18 17 40 40 H 1.09006 * 109.62418 * 334.44738 * 20 19 18 41 41 H 1.09000 * 109.63209 * 213.86342 * 20 19 18 42 42 H 1.09004 * 108.89665 * 40.76797 * 21 20 19 43 43 H 1.08998 * 108.89263 * 159.35615 * 21 20 19 44 44 H 1.09001 * 108.89120 * 182.69156 * 22 21 20 45 45 H 1.08995 * 108.89590 * 301.18303 * 22 21 20 46 46 H 1.09001 * 109.62904 * 95.21491 * 23 17 16 47 47 H 1.09002 * 109.78828 * 334.73289 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6926 -1.5593 -1.1321 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3361 -4.2322 10 1 2.1707 -0.3438 -5.1775 11 1 3.4932 -1.8326 -3.7938 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8770 -0.4913 3.6696 15 8 2.5753 -1.4804 3.7811 16 7 1.4273 0.1438 4.7700 17 6 1.7813 -0.3567 6.1005 18 6 0.8294 -1.5110 6.4684 19 6 0.8219 -1.8212 7.9775 20 6 2.2007 -1.7879 8.5792 21 6 2.4474 -0.3809 9.1609 22 6 2.8207 0.5849 8.1379 23 6 1.7130 0.7812 7.0827 24 1 -0.3633 0.4169 0.9393 25 1 -0.3634 0.6049 -0.8306 26 1 -0.3633 -1.0220 -0.1085 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 0.6650 1.1259 -3.4874 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7488 1.2493 33 1 0.9937 0.7579 2.3565 34 1 0.8693 0.9322 4.6809 35 1 2.8023 -0.7371 6.0720 36 1 -0.1814 -1.2451 6.1591 37 1 1.1376 -2.4063 5.9286 38 1 0.3937 -2.8117 8.1317 39 1 0.1976 -1.0862 8.4856 40 1 2.9417 -2.0006 7.8085 41 1 2.2715 -2.5303 9.3741 42 1 1.5378 -0.0385 9.6545 43 1 3.2481 -0.4392 9.8982 44 1 3.0271 1.5427 8.6154 45 1 3.7259 0.2387 7.6393 46 1 0.7386 0.7853 7.5712 47 1 1.8659 1.7270 6.5629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332057191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:39 Heat of formation + Delta-G solvation = -76.415145 kcal Electronic energy + Delta-G solvation = -23104.835996 eV Core-core repulsion = 19899.688271 eV Total energy + Delta-G solvation = -3205.147724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29051 -39.63858 -38.11058 -35.54674 -34.95903 -33.21936 -32.80344 -31.06123 -27.56139 -27.44996 -26.70952 -25.83261 -24.77906 -22.15677 -21.44192 -20.63126 -20.30185 -19.37504 -17.76848 -17.55203 -16.63543 -16.61267 -16.16879 -15.76009 -15.52932 -15.14150 -14.82146 -14.68156 -14.57818 -14.44831 -13.99272 -13.90087 -13.29037 -13.14137 -13.06531 -12.89823 -12.69163 -12.59895 -12.33193 -12.24034 -12.14128 -11.96953 -11.54496 -11.47873 -11.37422 -11.28568 -11.21840 -11.14958 -11.04985 -10.70889 -10.39605 -10.21596 -9.61924 -8.03020 -6.17349 1.42983 1.45263 1.53035 1.85426 2.24449 2.46579 3.20922 3.42604 3.66454 3.84314 4.07732 4.18766 4.20509 4.32909 4.42792 4.45084 4.52871 4.54696 4.59415 4.71879 4.88467 4.91948 4.99074 5.05311 5.06325 5.12178 5.13049 5.20168 5.22800 5.32436 5.33606 5.36589 5.39134 5.44340 5.51357 5.59069 5.64135 5.67351 5.68545 5.69914 6.13752 6.14421 6.22182 6.43733 6.86594 7.21713 7.49972 7.69075 8.96624 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040940 B = 0.003083 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.761925 B = 9080.079294 C = 9262.735425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.169 3.831 13 N -0.727 5.727 14 C 0.694 3.306 15 O -0.642 6.642 16 N -0.733 5.733 17 C 0.168 3.832 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.405 0.595 34 H 0.409 0.591 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.090 0.910 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 3.027 22.646 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.044 3.956 13 N -0.383 5.383 14 C 0.394 3.606 15 O -0.525 6.525 16 N -0.389 5.389 17 C 0.064 3.936 18 C -0.165 4.165 19 C -0.145 4.145 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.156 4.156 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.828 2.259 22.586 22.772 hybrid contribution -0.031 -0.208 -1.556 1.570 sum -1.858 2.052 21.030 21.211 Atomic orbital electron populations 1.21630 0.97022 0.99112 0.99683 1.18347 0.93257 0.93040 0.90153 1.21669 0.97842 0.97792 1.00319 1.21272 1.29612 1.14478 0.91707 0.93832 1.25441 0.95154 0.95554 1.00862 1.69925 1.38147 1.21936 1.23681 0.85786 0.78531 0.78840 0.79734 1.20412 1.20762 1.20153 1.21078 0.96515 0.94611 0.83397 1.45219 1.55867 1.33240 1.03940 1.16289 0.80172 0.82713 0.81441 1.90846 1.45214 1.29708 1.86710 1.45344 1.56459 1.32895 1.04239 1.20735 0.98206 0.94612 0.80091 1.22295 0.99426 0.97494 0.97253 1.21267 0.97860 1.02118 0.93303 1.21409 0.96842 0.97981 0.99955 1.20498 1.02617 0.94086 0.98069 1.20426 0.97555 1.00507 0.96755 1.21644 1.01161 0.96715 0.96104 0.94336 0.92094 0.96460 0.96470 0.91864 0.94462 0.93004 0.94927 0.94895 0.75833 0.75460 0.92725 0.91696 0.95059 0.92131 0.90135 0.93590 0.90946 0.90620 0.91558 0.90278 0.93538 0.89179 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.03 71.98 0.58 -4.66 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.32 8.11 71.98 0.58 -4.74 16 4 C -0.53 -28.70 8.01 25.60 0.20 -28.49 16 5 H 0.04 2.41 7.75 -2.91 -0.02 2.39 16 6 C 0.03 1.59 5.13 84.66 0.43 2.03 16 7 N -0.90 -48.25 9.45 21.45 0.20 -48.05 16 8 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.17 7.48 4.50 86.38 0.39 7.87 16 13 N -0.73 -26.10 4.91 -478.53 -2.35 -28.45 16 14 C 0.69 25.02 8.48 179.05 1.52 26.54 16 15 O -0.64 -29.11 16.01 -3.99 -0.06 -29.18 16 16 N -0.73 -18.58 4.95 -460.00 -2.28 -20.86 16 17 C 0.17 3.82 1.94 44.54 0.09 3.90 16 18 C -0.13 -2.82 5.37 31.31 0.17 -2.65 16 19 C -0.11 -1.74 5.31 30.14 0.16 -1.58 16 20 C -0.12 -1.96 5.61 30.20 0.17 -1.79 16 21 C -0.12 -1.41 5.26 28.74 0.15 -1.26 16 22 C -0.11 -1.58 5.26 28.74 0.15 -1.43 16 23 C -0.12 -1.75 5.17 30.20 0.16 -1.59 16 24 H 0.04 1.43 6.71 -2.39 -0.02 1.42 16 25 H 0.06 3.00 6.25 -2.39 -0.01 2.98 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 3.14 6.10 -2.38 -0.01 3.13 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.40 12.39 6.17 -92.71 -0.57 11.82 16 34 H 0.41 7.63 8.49 -92.71 -0.79 6.84 16 35 H 0.05 1.59 6.08 -2.39 -0.01 1.57 16 36 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.08 1.00 6.63 -2.39 -0.02 0.98 16 40 H 0.05 0.94 6.98 -2.38 -0.02 0.92 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.73 7.47 -2.38 -0.02 0.71 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.81 7.47 -2.39 -0.02 0.79 16 46 H 0.09 1.04 6.98 -2.39 -0.02 1.02 16 47 H 0.08 1.08 7.86 -2.39 -0.02 1.07 16 Total: -1.00 -64.26 350.39 1.86 -62.41 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.41 Total: 24.40 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.72 Total: -5.39 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -4.42 Total: -97.36 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.06 Total: -29.18 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.26 1.86 -62.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332057191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.007 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds