Wall clock time and date at job start Tue Mar 31 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47257 * 2 1 4 4 C 1.53005 * 109.46978 * 239.99916 * 2 1 3 5 5 C 1.52996 * 109.47115 * 120.00394 * 2 1 3 6 6 H 1.08997 * 108.44712 * 173.23134 * 5 2 1 7 7 C 1.52567 * 108.51452 * 55.53661 * 5 2 1 8 8 C 1.50884 * 109.35359 * 153.72694 * 7 5 2 9 9 C 1.53945 * 110.09749 * 91.88579 * 8 7 5 10 10 N 1.47606 * 112.14336 * 319.44139 * 9 8 7 11 11 C 1.34774 * 118.64636 * 137.86393 * 10 9 8 12 12 O 1.21585 * 119.99772 * 5.05314 * 11 10 9 13 13 N 1.34778 * 120.00032 * 185.05880 * 11 10 9 14 14 C 1.46502 * 119.99461 * 174.72453 * 13 11 10 15 15 C 1.50700 * 109.46638 * 180.27349 * 14 13 11 16 16 H 1.08007 * 120.00076 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00251 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99614 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00539 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47359 * 89.99692 * 19 17 15 21 21 H 1.48502 * 109.47504 * 210.00441 * 19 17 15 22 22 H 1.48503 * 109.47045 * 329.99827 * 19 17 15 23 23 C 1.44582 * 122.71174 * 318.13864 * 10 9 8 24 24 C 1.47101 * 108.51210 * 290.76842 * 5 2 1 25 25 H 1.09004 * 109.46850 * 299.99924 * 1 2 3 26 26 H 1.09004 * 109.47239 * 59.99598 * 1 2 3 27 27 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47274 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47324 * 300.00350 * 3 2 1 30 30 H 1.09004 * 109.47129 * 60.00246 * 3 2 1 31 31 H 1.08998 * 109.46970 * 300.04816 * 4 2 1 32 32 H 1.09003 * 109.46809 * 60.04275 * 4 2 1 33 33 H 1.08991 * 109.47192 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.48683 * 33.76718 * 7 5 2 35 35 H 1.08997 * 109.49351 * 273.68983 * 7 5 2 36 36 H 1.09005 * 109.36626 * 331.69293 * 8 7 5 37 37 H 1.08999 * 109.36464 * 212.08166 * 8 7 5 38 38 H 1.08993 * 108.95149 * 198.75016 * 9 8 7 39 39 H 1.09004 * 108.87416 * 80.07681 * 9 8 7 40 40 H 0.96989 * 119.99883 * 354.98997 * 13 11 10 41 41 H 1.09000 * 109.47024 * 300.26339 * 14 13 11 42 42 H 1.08995 * 109.47460 * 60.27255 * 14 13 11 43 43 H 0.97006 * 120.00033 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.44870 * 210.48404 * 23 10 9 45 45 H 1.09004 * 109.44976 * 330.40842 * 23 10 9 46 46 H 1.09001 * 109.32753 * 304.32706 * 24 5 2 47 47 H 1.09004 * 109.32406 * 63.97376 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1230 -0.8183 1.1734 7 6 1.4296 -2.1191 1.2846 8 6 2.3392 -3.0425 2.0571 9 6 1.9312 -3.0671 3.5413 10 7 1.5670 -1.7266 4.0404 11 6 0.4900 -1.6060 4.8416 12 8 -0.1050 -2.5989 5.2137 13 7 0.0724 -0.3849 5.2301 14 6 -1.1635 -0.2456 6.0044 15 6 -1.4072 1.2112 6.3036 16 1 -0.7108 1.9584 5.9525 17 6 -2.5190 1.5902 7.0255 18 7 -3.3672 0.6803 7.4526 19 14 -2.8207 3.3958 7.3970 20 1 -3.6305 3.9969 6.3070 21 1 -3.5516 3.5212 8.6836 22 1 -1.5197 4.1050 7.4958 23 6 2.3147 -0.5366 3.7007 24 6 1.7294 0.1055 2.4255 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6759 -1.7487 -1.2497 32 1 1.6772 -0.2070 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.3134 -2.4910 0.2666 35 1 0.4550 -2.0782 1.7708 36 1 3.3678 -2.6922 1.9707 37 1 2.2665 -4.0491 1.6454 38 1 2.7639 -3.4502 4.1310 39 1 1.0769 -3.7335 3.6611 40 1 0.5880 0.4018 4.9938 41 1 -1.9996 -0.6430 5.4289 42 1 -1.0707 -0.7979 6.9394 43 1 -4.1492 0.9469 7.9609 44 1 2.2532 0.1774 4.5219 45 1 3.3579 -0.8006 3.5271 46 1 2.1571 1.0991 2.2912 47 1 0.6478 0.1897 2.5317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335711994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:09 Heat of formation + Delta-G solvation = -48.572070 kcal Electronic energy + Delta-G solvation = -24015.605445 eV Core-core repulsion = 20811.665087 eV Total energy + Delta-G solvation = -3203.940358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49210 -38.75197 -35.83007 -34.27963 -33.11198 -31.95283 -31.61453 -28.07726 -27.36106 -27.12355 -25.98999 -24.88465 -22.77956 -21.53348 -20.70855 -18.91712 -18.60131 -17.70592 -16.12879 -16.04863 -15.66632 -14.89331 -14.69500 -14.51581 -14.37132 -14.01853 -13.79047 -13.50199 -13.13244 -12.90367 -12.77971 -12.47842 -12.12709 -11.95464 -11.92393 -11.75473 -11.69400 -11.48805 -11.33822 -11.07682 -10.99042 -10.92336 -10.85030 -10.65712 -10.27335 -10.25749 -10.12564 -10.02057 -9.32858 -9.24329 -8.68545 -8.27120 -7.64107 -6.11920 -4.18135 3.26467 3.29003 3.33505 3.37218 3.98396 4.34397 4.51162 4.61568 4.67653 4.82402 4.99717 5.09818 5.15247 5.21052 5.23542 5.24290 5.38686 5.48061 5.52070 5.59997 5.65462 5.69988 5.75379 5.78611 5.81085 5.87994 5.91022 5.99348 6.02501 6.07906 6.12171 6.20078 6.28158 6.31232 6.35647 6.46085 6.58666 6.99950 7.21501 7.57557 7.60835 7.62696 7.92908 8.07416 8.81036 8.98355 9.38768 9.53589 10.98390 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.004839 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.023525 B = 5785.446148 C = 6821.243132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.066 4.066 6 H 0.062 0.938 7 C -0.114 4.114 8 C -0.130 4.130 9 C 0.132 3.868 10 N -0.629 5.629 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.729 5.729 14 C 0.266 3.734 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.117 3.883 24 C -0.146 4.146 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.386 0.614 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.002 -1.483 -16.209 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.199 4.199 5 C -0.085 4.085 6 H 0.080 0.920 7 C -0.151 4.151 8 C -0.168 4.168 9 C 0.009 3.991 10 N -0.368 5.368 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.008 4.008 24 C -0.185 4.185 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.220 0.780 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.361 -2.229 -15.805 20.816 hybrid contribution 0.023 1.412 0.078 1.414 sum 13.384 -0.817 -15.727 20.667 Atomic orbital electron populations 1.21948 0.94491 1.02025 1.01737 1.20654 0.95890 0.95229 0.95004 1.21996 1.00612 0.95765 1.01916 1.21943 1.00583 1.00394 0.96971 1.20035 0.99646 0.94723 0.94077 0.92012 1.21226 0.99886 0.94134 0.99866 1.21778 0.99620 1.00232 0.95169 1.21538 1.00911 0.83647 0.92990 1.46882 1.30313 1.07332 1.52265 1.16185 0.80233 0.84861 0.79463 1.90845 1.59053 1.37012 1.61205 1.45867 1.28750 1.05328 1.58323 1.18951 0.79521 0.96539 0.90471 1.21215 1.08907 0.91778 1.35889 0.92082 1.24931 0.95634 0.98031 0.95359 1.69984 1.12784 1.33140 1.36410 0.86441 0.78373 0.84410 0.77821 1.20515 1.21038 1.19788 1.21279 0.95565 0.87204 0.96768 1.21517 1.03007 0.99180 0.94797 0.92090 0.93242 0.92484 0.92929 0.93085 0.91802 0.92369 0.93082 0.92984 0.91688 0.91231 0.92033 0.91144 0.93027 0.89526 0.77955 0.95949 0.95813 0.92520 0.90928 0.91087 0.90423 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.90 37.16 0.29 -1.28 16 2 C -0.07 -0.64 0.55 -154.51 -0.09 -0.73 16 3 C -0.15 -1.30 7.79 37.15 0.29 -1.01 16 4 C -0.14 -1.19 8.25 37.16 0.31 -0.88 16 5 C -0.07 -0.67 1.08 -93.67 -0.10 -0.77 16 6 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 7 C -0.11 -1.25 3.53 -28.01 -0.10 -1.35 16 8 C -0.13 -1.34 5.71 -27.30 -0.16 -1.49 16 9 C 0.13 1.82 6.07 -2.94 -0.02 1.80 16 10 N -0.63 -9.96 2.25 -178.62 -0.40 -10.37 16 11 C 0.69 14.77 8.20 -86.92 -0.71 14.06 16 12 O -0.60 -15.44 15.67 5.29 0.08 -15.35 16 13 N -0.73 -16.05 5.38 -66.42 -0.36 -16.41 16 14 C 0.27 7.25 5.43 -5.19 -0.03 7.23 16 15 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 16 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.12 1.46 5.03 -4.38 -0.02 1.43 16 24 C -0.15 -1.68 4.26 -28.88 -0.12 -1.80 16 25 H 0.06 0.76 6.70 -51.93 -0.35 0.41 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 31 H 0.06 0.49 6.12 -51.93 -0.32 0.17 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.64 5.55 -51.93 -0.29 0.36 16 35 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 36 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.39 7.02 -51.93 -0.36 1.03 16 40 H 0.39 7.42 5.97 -40.82 -0.24 7.18 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 45 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.08 0.78 5.80 -51.93 -0.30 0.48 16 47 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -31.94 348.23 -8.69 -40.63 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.10 Total: 4.15 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.87 Total: 1.77 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.02 Total: -52.42 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.94 -8.69 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335711994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.945 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds