Wall clock time and date at job start Tue Mar 31 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.53002 * 109.46897 * 119.99877 * 2 1 3 5 5 C 1.52998 * 109.47398 * 239.99936 * 2 1 3 6 6 H 1.09004 * 108.44951 * 183.20517 * 5 2 1 7 7 C 1.52573 * 108.51212 * 300.74395 * 5 2 1 8 8 C 1.50882 * 109.35927 * 206.26530 * 7 5 2 9 9 C 1.53946 * 110.09426 * 268.11475 * 8 7 5 10 10 N 1.47602 * 112.14321 * 40.56993 * 9 8 7 11 11 C 1.34781 * 118.64022 * 222.15342 * 10 9 8 12 12 O 1.21578 * 120.00161 * 4.59170 * 11 10 9 13 13 N 1.34776 * 119.99418 * 184.59447 * 11 10 9 14 14 C 1.46502 * 119.99572 * 174.70791 * 13 11 10 15 15 C 1.50706 * 109.46952 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00097 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99765 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99734 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00037 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47054 * 90.00312 * 19 17 15 21 21 H 1.48500 * 109.47120 * 209.99849 * 19 17 15 22 22 H 1.48500 * 109.47393 * 330.00471 * 19 17 15 23 23 C 1.44576 * 122.71323 * 42.12605 * 10 9 8 24 24 C 1.47086 * 108.51762 * 65.51348 * 5 2 1 25 25 H 1.09004 * 109.46896 * 60.00331 * 1 2 3 26 26 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47314 * 300.00583 * 1 2 3 28 28 H 1.09001 * 109.47337 * 59.99904 * 3 2 1 29 29 H 1.09007 * 109.47134 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47097 * 299.99799 * 3 2 1 31 31 H 1.09000 * 109.47337 * 54.46575 * 4 2 1 32 32 H 1.09002 * 109.47337 * 174.47230 * 4 2 1 33 33 H 1.09005 * 109.47113 * 294.46657 * 4 2 1 34 34 H 1.09004 * 109.49018 * 326.23480 * 7 5 2 35 35 H 1.09003 * 109.48599 * 86.30077 * 7 5 2 36 36 H 1.08998 * 109.36133 * 147.92805 * 8 7 5 37 37 H 1.08997 * 109.26456 * 28.24893 * 8 7 5 38 38 H 1.09000 * 108.94796 * 279.87972 * 9 8 7 39 39 H 1.09004 * 108.87179 * 161.20348 * 9 8 7 40 40 H 0.96998 * 120.00788 * 354.70429 * 13 11 10 41 41 H 1.08997 * 109.47345 * 299.99581 * 14 13 11 42 42 H 1.09000 * 109.47089 * 59.99882 * 14 13 11 43 43 H 0.97005 * 119.99683 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.44971 * 149.23851 * 23 10 9 45 45 H 1.08995 * 109.42769 * 29.30381 * 23 10 9 46 46 H 1.09007 * 109.32746 * 296.21085 * 24 5 2 47 47 H 1.09007 * 109.32690 * 55.67661 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 3.1284 -0.7618 -1.2039 7 6 1.5043 -2.1497 -1.2365 8 6 2.4379 -3.0411 -2.0177 9 6 1.9872 -3.1203 -3.4876 10 7 1.5376 -1.8122 -4.0029 11 6 0.4318 -1.7663 -4.7720 12 8 -0.2205 -2.7750 -4.9597 13 7 0.0491 -0.6022 -5.3331 14 6 -1.0840 -0.5741 -6.2613 15 6 -1.3043 0.8371 -6.7423 16 1 -0.6646 1.6333 -6.3914 17 6 -2.3233 1.1117 -7.6296 18 7 -2.5153 2.3430 -8.0498 19 14 -3.4302 -0.2654 -8.2360 20 1 -4.5951 -0.4016 -7.3251 21 1 -3.9077 0.0503 -9.6063 22 1 -2.6680 -1.5397 -8.2587 23 6 2.2342 -0.5782 -3.7162 24 6 1.6508 0.0614 -2.4321 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5979 -1.7163 1.3003 32 1 3.1254 -0.8078 1.2012 33 1 1.7597 -0.1533 2.1365 34 1 1.4385 -2.5044 -0.2079 35 1 0.5145 -2.1709 -1.6928 36 1 2.4311 -4.0407 -1.5832 37 1 3.4477 -2.6334 -1.9706 38 1 1.1669 -3.8335 -3.5683 39 1 2.8222 -3.4715 -4.0940 40 1 0.5238 0.2170 -5.1223 41 1 -0.8718 -1.2198 -7.1133 42 1 -1.9801 -0.9279 -5.7515 43 1 -3.2319 2.5361 -8.6744 44 1 2.1120 0.1103 -4.5523 45 1 3.2940 -0.7859 -3.5689 46 1 0.5635 0.0889 -2.5047 47 1 2.0288 1.0789 -2.3320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335711995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:14 Heat of formation + Delta-G solvation = -44.287352 kcal Electronic energy + Delta-G solvation = -23975.221178 eV Core-core repulsion = 20771.466619 eV Total energy + Delta-G solvation = -3203.754559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55090 -38.86375 -35.92166 -34.40452 -33.12553 -32.05439 -31.67210 -28.28619 -27.53295 -27.39855 -26.09800 -24.94458 -22.52357 -21.50049 -20.73206 -19.08987 -18.63508 -17.77239 -16.43975 -16.15016 -15.81529 -14.94477 -14.63560 -14.49872 -14.43621 -14.06869 -13.86390 -13.60847 -13.21407 -12.92454 -12.89564 -12.56751 -12.32198 -12.20680 -12.05338 -11.86419 -11.75391 -11.62555 -11.40340 -11.11729 -11.01005 -10.93624 -10.72677 -10.69387 -10.31778 -10.16644 -10.06685 -9.92523 -9.45253 -9.37935 -8.73696 -8.39900 -7.87994 -6.17769 -4.19127 3.20907 3.30634 3.37473 3.46273 3.82736 4.37296 4.46202 4.56212 4.62458 4.72902 4.90522 5.05145 5.11152 5.16264 5.18116 5.19923 5.34490 5.44861 5.48687 5.56084 5.61929 5.66855 5.70478 5.75041 5.76246 5.85420 5.87645 5.94962 5.98564 6.03234 6.07321 6.14955 6.23779 6.26964 6.31074 6.42331 6.53714 6.76936 6.97303 7.16743 7.30844 7.46746 7.57446 8.30673 8.72657 8.84788 9.26512 9.44867 10.94255 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.004572 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.976348 B = 6123.333126 C = 6852.316268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.067 4.067 6 H 0.062 0.938 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.130 3.870 10 N -0.627 5.627 11 C 0.693 3.307 12 O -0.605 6.605 13 N -0.723 5.723 14 C 0.237 3.763 15 C -0.540 4.540 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.114 3.886 24 C -0.145 4.145 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.392 0.608 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.267 0.733 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.563 -5.448 17.259 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.199 4.199 5 C -0.085 4.085 6 H 0.081 0.919 7 C -0.152 4.152 8 C -0.168 4.168 9 C 0.007 3.993 10 N -0.365 5.365 11 C 0.395 3.605 12 O -0.485 6.485 13 N -0.377 5.377 14 C 0.114 3.886 15 C -0.578 4.578 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.185 1.185 23 C -0.011 4.011 24 C -0.183 4.183 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.228 0.772 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.971 -6.057 16.956 21.621 hybrid contribution -0.375 -0.060 -0.237 0.447 sum 11.596 -6.117 16.719 21.246 Atomic orbital electron populations 1.21949 0.94554 1.01969 1.01739 1.20654 0.95845 0.95270 0.95008 1.21989 1.00683 0.95683 1.01940 1.21948 1.00683 1.00287 0.96956 1.20048 0.99793 0.94654 0.94051 0.91928 1.21246 0.99983 0.94091 0.99919 1.21772 0.99453 1.00395 0.95148 1.21576 0.99987 0.84592 0.93122 1.46849 1.28292 1.07309 1.54081 1.16143 0.80688 0.84645 0.79064 1.90830 1.56082 1.34629 1.66924 1.45560 1.36080 1.07648 1.48369 1.19344 0.83778 0.97862 0.87580 1.21089 1.16977 0.92093 1.27648 0.90388 1.24771 0.96827 0.95626 0.95339 1.69884 1.31915 1.18801 1.32549 0.86819 0.81409 0.83091 0.78380 1.19880 1.20986 1.18473 1.21433 0.96466 0.86059 0.97093 1.21575 1.02626 0.99457 0.94653 0.92117 0.92548 0.93185 0.93025 0.92885 0.91854 0.92378 0.92913 0.93065 0.91580 0.91293 0.91117 0.91974 0.89331 0.92924 0.77219 0.96127 0.96394 0.92330 0.90578 0.90896 0.90913 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.91 37.16 0.29 -1.22 16 2 C -0.07 -0.62 0.56 -154.51 -0.09 -0.71 16 3 C -0.15 -1.27 7.92 37.16 0.29 -0.98 16 4 C -0.14 -1.15 8.06 37.16 0.30 -0.85 16 5 C -0.07 -0.65 1.06 -93.68 -0.10 -0.75 16 6 H 0.06 0.57 7.35 -51.93 -0.38 0.19 16 7 C -0.12 -1.21 3.62 -28.01 -0.10 -1.31 16 8 C -0.13 -1.27 5.71 -27.30 -0.16 -1.43 16 9 C 0.13 1.70 6.13 -2.95 -0.02 1.68 16 10 N -0.63 -9.53 2.24 -178.28 -0.40 -9.93 16 11 C 0.69 14.13 8.21 -86.91 -0.71 13.42 16 12 O -0.60 -14.62 15.62 5.30 0.08 -14.54 16 13 N -0.72 -15.36 5.38 -66.41 -0.36 -15.72 16 14 C 0.24 6.02 4.50 -5.19 -0.02 5.99 16 15 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 23 C 0.11 1.39 5.20 -4.09 -0.02 1.37 16 24 C -0.14 -1.61 4.36 -28.59 -0.12 -1.74 16 25 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 26 H 0.06 0.61 6.96 -51.93 -0.36 0.25 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 6.19 -51.93 -0.32 0.26 16 31 H 0.06 0.47 6.20 -51.93 -0.32 0.15 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.63 5.56 -51.93 -0.29 0.34 16 35 H 0.07 0.93 7.20 -51.93 -0.37 0.56 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 38 H 0.09 1.35 6.91 -51.93 -0.36 0.99 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.39 7.46 5.92 -40.82 -0.24 7.21 16 41 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 42 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.97 6.13 -51.93 -0.32 0.66 16 45 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 47 H 0.08 0.78 5.84 -51.93 -0.30 0.48 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -31.87 344.62 -8.32 -40.19 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.05 Total: 3.36 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.89 Total: 0.27 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.02 Total: -51.58 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.87 -8.32 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335711995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.098 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds