Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46511 * 119.99947 * 2 1 4 4 C 1.52999 * 109.47244 * 270.00109 * 3 2 1 5 5 C 1.52997 * 109.47086 * 59.99729 * 4 3 2 6 6 C 1.52996 * 109.46921 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47111 * 300.00008 * 4 3 2 8 8 C 1.34777 * 120.00029 * 180.02562 * 2 1 3 9 9 O 1.21589 * 119.99554 * 172.74351 * 8 2 1 10 10 N 1.34774 * 119.99783 * 352.74099 * 8 2 1 11 11 C 1.46928 * 120.62581 * 155.50231 * 10 8 2 12 12 C 1.53196 * 108.89203 * 233.55666 * 11 10 8 13 13 C 1.53078 * 109.29655 * 305.58318 * 12 11 10 14 14 C 1.50701 * 109.44072 * 181.23340 * 13 12 11 15 15 H 1.08002 * 119.99973 * 239.79409 * 14 13 12 16 16 C 1.37871 * 119.99942 * 59.79678 * 14 13 12 17 17 N 1.31520 * 120.00080 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00009 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47047 * 89.99969 * 18 16 14 20 20 H 1.48504 * 109.47138 * 209.99715 * 18 16 14 21 21 H 1.48494 * 109.47016 * 329.99864 * 18 16 14 22 22 C 1.53038 * 109.65745 * 61.14978 * 13 12 11 23 23 C 1.46918 * 120.63218 * 335.52627 * 10 8 2 24 24 H 1.08996 * 109.46969 * 272.79652 * 1 2 3 25 25 H 1.09005 * 109.46901 * 32.79534 * 1 2 3 26 26 H 1.08993 * 109.47200 * 152.79036 * 1 2 3 27 27 H 1.08996 * 109.47072 * 30.00246 * 3 2 1 28 28 H 1.08999 * 109.46890 * 150.00224 * 3 2 1 29 29 H 1.09006 * 109.46934 * 60.00653 * 5 4 3 30 30 H 1.08999 * 109.47249 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.47414 * 300.00243 * 5 4 3 32 32 H 1.08999 * 109.47045 * 60.00218 * 6 4 3 33 33 H 1.09005 * 109.46846 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47239 * 300.00043 * 6 4 3 35 35 H 1.09002 * 109.46642 * 60.00150 * 7 4 3 36 36 H 1.08999 * 109.46902 * 179.97438 * 7 4 3 37 37 H 1.08999 * 109.47331 * 300.00074 * 7 4 3 38 38 H 1.08999 * 109.58932 * 353.41790 * 11 10 8 39 39 H 1.09001 * 109.58601 * 113.70512 * 11 10 8 40 40 H 1.09006 * 109.49202 * 65.38947 * 12 11 10 41 41 H 1.08996 * 109.50069 * 185.48384 * 12 11 10 42 42 H 1.08997 * 109.34346 * 301.12838 * 13 12 11 43 43 H 0.97005 * 119.99939 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.49984 * 178.74638 * 22 13 12 45 45 H 1.09009 * 109.52735 * 58.66910 * 22 13 12 46 46 H 1.09002 * 109.59136 * 246.15716 * 23 10 8 47 47 H 1.08999 * 109.58932 * 6.43912 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 1.1157 1.8934 -2.1637 6 6 3.2169 3.0359 -1.4424 7 6 3.2794 0.6442 -2.1638 8 6 2.1389 -1.1672 -0.0005 9 8 3.3475 -1.1713 -0.1335 10 7 1.4731 -2.3297 0.1464 11 6 2.0383 -3.5858 -0.3650 12 6 1.0056 -4.2611 -1.2730 13 6 -0.3099 -4.4258 -0.5078 14 6 -1.3190 -5.1171 -1.3881 15 1 -2.2487 -4.6251 -1.6332 16 6 -1.0554 -6.3777 -1.8803 17 7 0.0769 -6.9766 -1.5822 18 14 -2.3065 -7.2350 -2.9709 19 1 -2.0400 -6.8951 -4.3916 20 1 -2.2005 -8.7045 -2.7852 21 1 -3.6735 -6.7869 -2.6027 22 6 -0.8449 -3.0507 -0.1016 23 6 0.1682 -2.3650 0.8205 24 1 -0.3633 0.0501 1.0264 25 1 -0.3633 0.8639 -0.5567 26 1 -0.3633 -0.9139 -0.4699 27 1 1.6085 2.0284 0.5139 28 1 3.1500 1.1385 0.5138 29 1 0.5266 2.6532 -1.6499 30 1 1.2973 2.2086 -3.1912 31 1 0.5707 0.9495 -2.1637 32 1 4.1693 2.9059 -0.9285 33 1 3.3990 3.3503 -2.4701 34 1 2.6275 3.7952 -0.9287 35 1 2.7344 -0.2997 -2.1638 36 1 3.4607 0.9587 -3.1915 37 1 4.2319 0.5139 -1.6500 38 1 2.9431 -3.3742 -0.9348 39 1 2.2778 -4.2452 0.4693 40 1 0.8366 -3.6424 -2.1544 41 1 1.3755 -5.2393 -1.5800 42 1 -0.1354 -5.0258 0.3853 43 1 0.2622 -7.8637 -1.9282 44 1 -1.7927 -3.1695 0.4235 45 1 -0.9966 -2.4410 -0.9925 46 1 0.2527 -2.9257 1.7515 47 1 -0.1599 -1.3480 1.0352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335923564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = -4.836725 kcal Electronic energy + Delta-G solvation = -24374.414877 eV Core-core repulsion = 21172.371026 eV Total energy + Delta-G solvation = -3202.043851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55333 -37.85152 -36.49940 -34.73992 -33.24124 -31.01961 -30.29006 -27.93113 -27.16756 -26.86150 -26.65361 -24.86015 -22.52723 -22.16359 -20.32848 -18.82286 -18.36074 -16.98445 -16.47764 -16.03429 -15.77856 -14.72459 -14.57530 -14.37817 -14.25635 -13.72268 -13.55224 -13.25126 -12.99322 -12.82193 -12.60553 -12.41868 -12.24999 -12.04281 -11.89799 -11.53215 -11.42272 -11.15111 -11.03991 -10.91089 -10.80973 -10.68290 -10.59488 -10.55306 -10.32662 -10.05419 -9.59107 -9.52276 -9.05825 -8.91883 -8.42240 -8.36328 -7.75160 -6.01195 -4.08424 2.98638 3.28370 3.35768 3.37846 3.51124 4.16392 4.41111 4.79543 4.80990 4.95866 5.11056 5.28112 5.31572 5.38781 5.50566 5.55035 5.59192 5.73351 5.75507 5.79513 5.83898 5.85955 5.94665 5.97105 6.08687 6.09041 6.11419 6.25191 6.31162 6.40678 6.45897 6.50453 6.61625 6.66020 6.70457 6.94379 7.03141 7.18534 7.27496 7.50124 7.71945 7.93657 8.07179 8.35401 8.40668 8.95089 8.98104 9.56751 11.03854 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.004348 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.687025 B = 6438.398592 C = 6551.373667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.630 5.630 3 C 0.146 3.854 4 C -0.086 4.086 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.127 4.127 8 C 0.710 3.290 9 O -0.590 6.590 10 N -0.625 5.625 11 C 0.133 3.867 12 C -0.123 4.123 13 C 0.051 3.949 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.125 4.125 23 C 0.071 3.929 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.103 0.897 42 H 0.026 0.974 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 16.952 2.732 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.368 5.368 3 C 0.022 3.978 4 C -0.087 4.087 5 C -0.200 4.200 6 C -0.195 4.195 7 C -0.185 4.185 8 C 0.413 3.587 9 O -0.469 6.469 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.161 4.161 13 C 0.032 3.968 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.051 4.051 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.277 16.742 2.642 17.102 hybrid contribution -0.856 -0.607 -0.641 1.229 sum 1.421 16.136 2.002 16.321 Atomic orbital electron populations 1.22580 0.80611 1.04560 1.00671 1.47022 1.06069 1.05032 1.78681 1.21325 0.97103 0.83764 0.95640 1.20982 0.95940 0.95734 0.96085 1.21974 0.96547 1.01640 0.99798 1.21801 0.99958 0.96021 1.01746 1.21800 1.00241 0.98113 0.98302 1.15902 0.84962 0.80215 0.77599 1.90848 1.12255 1.86016 1.57746 1.47275 1.21462 1.06176 1.61269 1.21695 0.97086 0.82637 0.97525 1.22043 0.96352 1.01114 0.96640 1.18603 0.92633 0.89816 0.95740 1.21193 1.02967 1.00724 1.30330 0.92787 1.24962 0.95349 0.97302 0.96319 1.69852 1.23158 1.14602 1.45219 0.86634 0.81843 0.78781 0.80963 1.20766 1.21264 1.19995 1.22070 0.96965 0.99526 0.97748 1.22790 0.83691 1.02976 0.95681 0.92617 0.91539 0.88501 0.91270 0.90235 0.93110 0.93020 0.91953 0.92577 0.92621 0.92912 0.92333 0.94161 0.92076 0.91368 0.92800 0.94618 0.87913 0.95553 0.92963 0.92280 0.92853 0.92725 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 7.55 59.85 0.45 1.13 16 2 N -0.63 -8.86 2.40 -203.84 -0.49 -9.35 16 3 C 0.15 1.75 4.60 -4.04 -0.02 1.73 16 4 C -0.09 -0.98 0.84 -154.51 -0.13 -1.11 16 5 C -0.14 -1.51 7.22 37.16 0.27 -1.24 16 6 C -0.14 -1.28 8.47 37.16 0.31 -0.96 16 7 C -0.13 -1.81 7.04 37.16 0.26 -1.55 16 8 C 0.71 12.75 6.52 -86.92 -0.57 12.19 16 9 O -0.59 -12.15 13.34 5.29 0.07 -12.08 16 10 N -0.62 -11.52 2.85 -178.50 -0.51 -12.03 16 11 C 0.13 2.72 6.34 -3.71 -0.02 2.70 16 12 C -0.12 -2.83 5.16 -26.59 -0.14 -2.97 16 13 C 0.05 1.19 2.06 -91.71 -0.19 1.00 16 14 C -0.51 -13.53 8.56 -34.44 -0.29 -13.83 16 15 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.12 -2.34 4.86 -26.61 -0.13 -2.47 16 23 C 0.07 1.15 5.38 -3.71 -0.02 1.13 16 24 H 0.06 0.56 6.75 -51.93 -0.35 0.21 16 25 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 26 H 0.10 1.31 3.70 -51.93 -0.19 1.12 16 27 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 29 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.75 5.94 -51.93 -0.31 0.44 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 1.01 6.02 -51.93 -0.31 0.69 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.95 7.60 -51.93 -0.39 0.55 16 38 H 0.07 1.42 7.34 -51.93 -0.38 1.04 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 2.66 6.03 -51.93 -0.31 2.35 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.00 6.72 -51.92 -0.35 0.65 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.34 3.06 -71.65 -0.22 1.12 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -29.19 340.90 -8.62 -37.81 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.13 Total: 1.51 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.31 Total: -2.68 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.37 Total: -45.49 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.19 -8.62 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335923564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.968 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds