Wall clock time and date at job start Tue Mar 31 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00286 * 2 1 4 4 C 1.53007 * 109.46590 * 269.99641 * 3 2 1 5 5 C 1.52995 * 109.47153 * 60.00116 * 4 3 2 6 6 C 1.53006 * 109.46812 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47069 * 299.99538 * 4 3 2 8 8 C 1.34774 * 119.99657 * 179.97438 * 2 1 3 9 9 O 1.21593 * 120.00057 * 169.15596 * 8 2 1 10 10 N 1.34776 * 120.00486 * 349.15212 * 8 2 1 11 11 C 1.46500 * 120.00686 * 174.65437 * 10 8 2 12 12 C 1.50697 * 109.47161 * 270.00719 * 11 10 8 13 13 H 1.08002 * 119.99921 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00160 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99875 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00219 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47149 * 59.99537 * 16 14 12 18 18 H 1.48497 * 109.47120 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46797 * 299.99788 * 16 14 12 20 20 C 1.46504 * 119.99535 * 354.66111 * 10 8 2 21 21 C 1.52992 * 109.47471 * 99.18580 * 20 10 8 22 22 C 1.53002 * 117.50068 * 216.61704 * 21 20 10 23 23 C 1.53004 * 60.00169 * 252.50851 * 22 21 20 24 24 H 1.09004 * 109.47353 * 275.76130 * 1 2 3 25 25 H 1.08998 * 109.46979 * 35.75781 * 1 2 3 26 26 H 1.08998 * 109.47274 * 155.75946 * 1 2 3 27 27 H 1.08999 * 109.47305 * 29.99630 * 3 2 1 28 28 H 1.08995 * 109.47368 * 149.99683 * 3 2 1 29 29 H 1.08999 * 109.47119 * 59.99780 * 5 4 3 30 30 H 1.09007 * 109.47208 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47084 * 299.99935 * 5 4 3 32 32 H 1.08995 * 109.47355 * 59.99913 * 6 4 3 33 33 H 1.08999 * 109.46783 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.46738 * 299.99591 * 6 4 3 35 35 H 1.09004 * 109.46749 * 60.00322 * 7 4 3 36 36 H 1.09001 * 109.47511 * 179.97438 * 7 4 3 37 37 H 1.09000 * 109.47690 * 300.00722 * 7 4 3 38 38 H 1.09001 * 109.46370 * 30.00160 * 11 10 8 39 39 H 1.08996 * 109.47484 * 150.00392 * 11 10 8 40 40 H 0.96997 * 119.99962 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.46859 * 219.18557 * 20 10 8 42 42 H 1.08998 * 109.47108 * 339.17992 * 20 10 8 43 43 H 1.09005 * 115.55023 * 2.33374 * 21 20 10 44 44 H 1.08999 * 117.49611 * 0.02562 * 22 21 20 45 45 H 1.09002 * 117.49491 * 145.02103 * 22 21 20 46 46 H 1.08995 * 117.50244 * 252.50754 * 23 22 21 47 47 H 1.09007 * 117.49258 * 107.48518 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4426 5 6 1.1158 1.8931 -2.1639 6 6 3.2182 3.0349 -1.4427 7 6 3.2795 0.6439 -2.1637 8 6 2.1388 -1.1672 0.0005 9 8 3.3384 -1.1768 -0.1976 10 7 1.4830 -2.3239 0.2207 11 6 2.1914 -3.6011 0.1057 12 6 2.0902 -4.1059 -1.3106 13 1 1.5518 -3.5328 -2.0509 14 6 2.6852 -5.2993 -1.6613 15 7 3.3413 -5.9968 -0.7599 16 14 2.5592 -5.9254 -3.4167 17 1 3.1691 -4.9354 -4.3403 18 1 3.2784 -7.2193 -3.5336 19 1 1.1303 -6.1188 -3.7719 20 6 0.0616 -2.3040 0.5749 21 6 -0.7785 -2.5942 -0.6704 22 6 -2.1058 -1.8474 -0.8170 23 6 -2.1008 -3.3383 -0.4729 24 1 -0.3634 0.1032 1.0225 25 1 -0.3633 0.8339 -0.6005 26 1 -0.3634 -0.9370 -0.4219 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 0.5267 2.6529 -1.6501 30 1 1.2975 2.2073 -3.1918 31 1 0.5707 0.9492 -2.1638 32 1 4.1706 2.9042 -0.9289 33 1 3.3995 3.3497 -2.4704 34 1 2.6295 3.7948 -0.9288 35 1 2.7344 -0.3001 -2.1636 36 1 3.4608 0.9581 -3.1915 37 1 4.2319 0.5134 -1.6498 38 1 3.2401 -3.4595 0.3670 39 1 1.7430 -4.3276 0.7833 40 1 3.7601 -6.8361 -1.0066 41 1 -0.1351 -3.0640 1.3311 42 1 -0.2008 -1.3224 0.9696 43 1 -0.2147 -2.8027 -1.5797 44 1 -2.3803 -1.1490 -0.0264 45 1 -2.4154 -1.5642 -1.8230 46 1 -2.4072 -4.0358 -1.2525 47 1 -2.3722 -3.6209 0.5443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337827964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:37 Heat of formation + Delta-G solvation = 57.329860 kcal Electronic energy + Delta-G solvation = -24667.726854 eV Core-core repulsion = 21468.378748 eV Total energy + Delta-G solvation = -3199.348106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48703 -37.90638 -36.84134 -34.36800 -34.02265 -32.26654 -28.66366 -27.47453 -26.94105 -26.72345 -26.31815 -24.38697 -22.56746 -21.93494 -20.47256 -19.31015 -18.36712 -16.72675 -16.29215 -16.04401 -15.52538 -14.91433 -14.56643 -14.36501 -14.25557 -13.97581 -13.45597 -13.29131 -12.95228 -12.82123 -12.77061 -12.13583 -12.09972 -11.86842 -11.45538 -11.34017 -11.27168 -11.19311 -11.15968 -10.92808 -10.80578 -10.59138 -10.42749 -10.37746 -10.30792 -9.92330 -9.83742 -9.53152 -9.46484 -8.91203 -8.36008 -8.11544 -7.45202 -5.97258 -4.00784 3.33722 3.35465 3.38759 3.43064 3.96496 4.03984 4.40285 4.52921 4.98986 5.00977 5.02692 5.07720 5.17726 5.27106 5.36479 5.44310 5.54104 5.56490 5.68661 5.72981 5.74735 5.78921 5.90687 5.92387 5.96528 6.03154 6.05630 6.11276 6.14683 6.21384 6.31273 6.32119 6.32534 6.49086 6.65569 6.69158 6.86214 7.02871 7.19182 7.46970 7.67466 7.81426 8.03489 8.32412 8.80990 8.99183 9.47320 9.65527 11.10544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.006703 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.826123 B = 4176.213524 C = 5090.527902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.637 5.637 3 C 0.149 3.851 4 C -0.086 4.086 5 C -0.140 4.140 6 C -0.137 4.137 7 C -0.127 4.127 8 C 0.704 3.296 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.262 3.738 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.103 3.897 21 C -0.162 4.162 22 C -0.194 4.194 23 C -0.171 4.171 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.132 0.868 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 14.357 1.534 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.376 5.376 3 C 0.025 3.975 4 C -0.088 4.088 5 C -0.197 4.197 6 C -0.195 4.195 7 C -0.185 4.185 8 C 0.407 3.593 9 O -0.455 6.455 10 N -0.344 5.344 11 C 0.143 3.857 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.021 4.021 21 C -0.181 4.181 22 C -0.231 4.231 23 C -0.208 4.208 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.149 0.851 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.098 14.122 1.479 16.864 hybrid contribution -0.241 -0.482 -1.105 1.229 sum -9.339 13.640 0.374 16.535 Atomic orbital electron populations 1.23607 0.81509 1.06783 0.99859 1.46943 1.05641 1.04930 1.80045 1.21237 0.96941 0.84009 0.95343 1.20998 0.95760 0.95651 0.96384 1.21955 0.96741 1.01455 0.99551 1.21803 0.99996 0.96145 1.01535 1.21822 1.00525 0.98320 0.97789 1.15928 0.85192 0.80024 0.78152 1.90878 1.13029 1.85392 1.56158 1.47450 1.08847 1.06744 1.71377 1.19159 0.93022 0.76898 0.96643 1.21417 1.33613 1.05174 0.95448 0.92648 1.24902 0.95207 0.96739 0.97188 1.69920 1.35124 1.14938 1.33509 0.86652 0.78009 0.78048 0.85258 1.20301 1.21256 1.20389 1.22280 0.81999 1.03595 0.94238 1.23090 0.89517 1.02991 1.02539 1.23165 1.02013 0.95370 1.02555 1.22960 1.01418 0.93987 1.02482 0.93845 0.92482 0.85084 0.91774 0.90495 0.93397 0.93280 0.91941 0.92584 0.92804 0.93149 0.91622 0.94645 0.92015 0.93815 0.95247 0.92806 0.91683 0.87448 0.85915 0.88874 0.89035 0.89010 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 6.77 59.85 0.41 0.71 16 2 N -0.64 -10.43 2.40 -217.79 -0.52 -10.95 16 3 C 0.15 2.14 4.61 -4.04 -0.02 2.12 16 4 C -0.09 -1.19 0.84 -154.51 -0.13 -1.32 16 5 C -0.14 -1.72 7.23 37.15 0.27 -1.45 16 6 C -0.14 -1.54 8.47 37.16 0.31 -1.23 16 7 C -0.13 -2.22 7.00 37.16 0.26 -1.96 16 8 C 0.70 15.05 6.86 -86.92 -0.60 14.46 16 9 O -0.58 -14.57 12.91 5.28 0.07 -14.50 16 10 N -0.61 -13.08 2.46 -188.24 -0.46 -13.54 16 11 C 0.26 6.90 5.22 -5.20 -0.03 6.87 16 12 C -0.52 -14.47 8.80 -34.44 -0.30 -14.78 16 13 H 0.06 1.54 6.40 -52.49 -0.34 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.10 1.70 5.14 -4.04 -0.02 1.68 16 21 C -0.16 -2.54 4.49 -90.62 -0.41 -2.94 16 22 C -0.19 -2.24 8.70 -26.73 -0.23 -2.48 16 23 C -0.17 -2.27 10.21 -26.73 -0.27 -2.54 16 24 H 0.04 0.49 6.97 -51.93 -0.36 0.13 16 25 H 0.06 0.64 5.82 -51.93 -0.30 0.33 16 26 H 0.13 1.80 1.16 -75.55 -0.09 1.72 16 27 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.08 1.24 7.60 -51.93 -0.39 0.84 16 29 H 0.05 0.50 8.10 -51.93 -0.42 0.07 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.85 5.89 -51.93 -0.31 0.54 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.38 5.96 -51.93 -0.31 1.07 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 1.18 7.55 -51.93 -0.39 0.78 16 38 H 0.04 1.31 7.35 -51.93 -0.38 0.93 16 39 H 0.03 0.79 7.99 -51.93 -0.41 0.38 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 42 H 0.11 1.49 3.31 -87.29 -0.29 1.20 16 43 H 0.12 2.38 6.26 -51.93 -0.32 2.06 16 44 H 0.09 0.89 7.63 -51.93 -0.40 0.49 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -31.80 349.21 -8.86 -40.66 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.07 Total: 3.31 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.86 Total: -1.20 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.25 Total: -50.52 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.07 Total: -14.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.80 -8.86 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337827964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.994 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds