Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47130 * 119.99890 * 2 1 3 5 5 C 1.50702 * 109.47173 * 239.99359 * 2 1 3 6 6 O 1.21280 * 119.99798 * 5.57638 * 5 2 1 7 7 N 1.34779 * 120.00027 * 185.56722 * 5 2 1 8 8 C 1.47077 * 120.88110 * 174.59284 * 7 5 2 9 9 C 1.53697 * 108.27609 * 128.75279 * 8 7 5 10 10 N 1.46897 * 109.25289 * 54.08634 * 9 8 7 11 11 C 1.46906 * 110.99993 * 172.60276 * 10 9 8 12 12 C 1.52996 * 109.47127 * 294.30326 * 11 10 9 13 13 C 1.53005 * 109.46805 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46695 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00303 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99597 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00249 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99837 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46742 * 60.00154 * 18 16 14 20 20 H 1.48501 * 109.46895 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46844 * 300.00131 * 18 16 14 22 22 C 1.46898 * 111.27182 * 296.75597 * 10 9 8 23 23 C 1.47077 * 120.88251 * 354.87443 * 7 5 2 24 24 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47043 * 60.00230 * 1 2 3 26 26 H 1.08999 * 109.46964 * 299.99876 * 1 2 3 27 27 H 1.08997 * 109.47602 * 76.98139 * 3 2 1 28 28 H 1.08998 * 109.47728 * 196.98836 * 3 2 1 29 29 H 1.08999 * 109.46910 * 316.98359 * 3 2 1 30 30 H 1.09001 * 109.47286 * 66.82714 * 4 2 1 31 31 H 1.08999 * 109.47319 * 186.83142 * 4 2 1 32 32 H 1.09006 * 109.47198 * 306.82965 * 4 2 1 33 33 H 1.08999 * 109.63066 * 248.52954 * 8 7 5 34 34 H 1.09001 * 109.62553 * 9.10535 * 8 7 5 35 35 H 1.08996 * 109.65211 * 294.07996 * 9 8 7 36 36 H 1.08999 * 109.44126 * 173.96063 * 9 8 7 37 37 H 1.09003 * 109.46556 * 54.30086 * 11 10 9 38 38 H 1.09001 * 109.47145 * 174.29924 * 11 10 9 39 39 H 1.09003 * 109.47206 * 299.99361 * 12 11 10 40 40 H 1.08996 * 109.47122 * 60.00123 * 12 11 10 41 41 H 1.09003 * 109.46780 * 299.99699 * 13 12 11 42 42 H 1.09001 * 109.47244 * 59.99736 * 13 12 11 43 43 H 0.97005 * 120.00044 * 180.02562 * 17 16 14 44 44 H 1.09010 * 109.48807 * 303.14312 * 22 10 9 45 45 H 1.09001 * 109.49874 * 183.06926 * 22 10 9 46 46 H 1.09006 * 109.63028 * 350.89229 * 23 7 5 47 47 H 1.08999 * 109.63259 * 111.47482 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7106 -1.2304 6 8 1.2489 -1.0823 -2.0782 7 7 3.3522 -0.9327 -1.3886 8 6 3.8538 -1.7261 -2.5209 9 6 4.9586 -0.9201 -3.2224 10 7 5.9765 -0.5335 -2.2364 11 6 7.1360 0.0861 -2.8920 12 6 7.8418 -0.9515 -3.7672 13 6 9.0490 -0.3059 -4.4505 14 6 9.7445 -1.3281 -5.3120 15 1 9.3639 -2.3373 -5.3665 16 6 10.8668 -0.9748 -6.0309 17 7 11.3306 0.2540 -5.9642 18 14 11.7295 -2.2421 -7.0983 19 1 10.7866 -2.7450 -8.1295 20 1 12.9004 -1.6152 -7.7626 21 1 12.1868 -3.3733 -6.2519 22 6 5.4144 0.3553 -1.2107 23 6 4.3288 -0.3933 -0.4302 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.9429 1.8622 1.0012 28 1 3.0877 1.4574 -0.3002 29 1 1.4527 2.0354 -0.7011 30 1 1.7798 -1.7781 1.1903 31 1 3.1231 -0.6166 1.3125 32 1 1.5803 -0.2828 2.1351 33 1 4.2601 -2.6693 -2.1556 34 1 3.0407 -1.9209 -3.2202 35 1 4.5296 -0.0249 -3.6725 36 1 5.4178 -1.5329 -3.9981 37 1 6.8011 0.9174 -3.5124 38 1 7.8281 0.4538 -2.1345 39 1 8.1766 -1.7828 -3.1468 40 1 7.1496 -1.3191 -4.5247 41 1 8.7137 0.5252 -5.0710 42 1 9.7413 0.0621 -3.6933 43 1 12.1200 0.5026 -6.4702 44 1 4.9791 1.2329 -1.6888 45 1 6.2042 0.6672 -0.5272 46 1 3.8299 0.2937 0.2535 47 1 4.7799 -1.2107 0.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338731664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = -34.338922 kcal Electronic energy + Delta-G solvation = -23061.548409 eV Core-core repulsion = 19858.225247 eV Total energy + Delta-G solvation = -3203.323162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89141 -38.31249 -36.16259 -35.18758 -33.38361 -31.43354 -31.12059 -28.08722 -27.73238 -27.53133 -25.67518 -24.04092 -23.15903 -22.11653 -20.54355 -19.91176 -18.82875 -16.91951 -16.30951 -16.18847 -15.61500 -15.39970 -14.89565 -14.70683 -14.55569 -14.31142 -14.23511 -14.10789 -13.58737 -12.79547 -12.68120 -12.59065 -12.43085 -12.32066 -12.20048 -12.05031 -11.71506 -11.55754 -11.39472 -11.30983 -11.28836 -11.16418 -10.80982 -10.78533 -10.53012 -10.48405 -9.74364 -9.58421 -9.34844 -9.10213 -8.81091 -8.34054 -8.14214 -5.99624 -4.01792 2.48763 2.81824 3.33996 3.38108 3.40861 3.98512 4.10627 4.41912 4.46977 4.52701 4.72649 4.83948 4.88108 5.02557 5.12192 5.16085 5.26713 5.29594 5.32983 5.36213 5.38658 5.48302 5.52695 5.55232 5.62933 5.67959 5.73691 5.78676 5.86333 5.88859 5.90210 5.98492 6.04203 6.26725 6.36807 6.66316 6.70474 7.07475 7.21930 7.26009 7.35042 7.67652 7.82295 8.00478 8.03501 8.43695 9.05201 9.62262 11.11790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041576 B = 0.002857 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.309263 B = 9796.727659 C =10097.955885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.156 4.156 4 C -0.155 4.155 5 C 0.524 3.476 6 O -0.544 6.544 7 N -0.609 5.609 8 C 0.116 3.884 9 C 0.039 3.961 10 N -0.537 5.537 11 C 0.057 3.943 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.037 3.963 23 C 0.092 3.908 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.035 0.965 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 1.550 16.088 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.213 4.213 4 C -0.212 4.212 5 C 0.312 3.688 6 O -0.421 6.421 7 N -0.342 5.342 8 C -0.007 4.007 9 C -0.090 4.090 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.092 4.092 23 C -0.031 4.031 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.105 0.895 46 H 0.125 0.875 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.958 1.042 15.794 24.697 hybrid contribution 0.454 0.142 -1.067 1.168 sum -18.504 1.184 14.727 23.679 Atomic orbital electron populations 1.21658 0.91898 1.02717 1.02030 1.20776 0.98031 0.96415 0.93744 1.22188 1.02133 0.93810 1.03171 1.22229 1.02371 1.00701 0.95865 1.20604 0.81643 0.78979 0.87606 1.90672 1.55028 1.52369 1.44048 1.48139 1.05664 1.53046 1.27397 1.21859 0.96467 0.94011 0.88349 1.22605 0.92166 0.99375 0.94812 1.62031 1.07619 1.42186 1.14348 1.22309 0.90785 0.96712 0.97207 1.21665 0.98184 0.97405 0.97025 1.19063 0.91477 0.95906 0.95062 1.21212 1.10950 0.96921 1.26688 0.92718 1.25027 0.97240 0.95282 0.96930 1.69955 1.23849 1.17670 1.42168 0.86659 0.79058 0.81617 0.80680 1.20259 1.21313 1.20203 1.22503 0.97081 0.94086 0.95541 1.22508 0.89681 0.99055 0.91826 0.92109 0.91865 0.92051 0.91105 0.90958 0.91778 0.92092 0.90756 0.91374 0.90632 0.88912 0.94695 0.88576 0.95296 0.91029 0.92508 0.93447 0.96875 0.96623 0.92974 0.94711 0.89462 0.87480 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 7.71 37.16 0.29 -0.79 16 2 C -0.09 -0.75 0.75 -155.66 -0.12 -0.87 16 3 C -0.16 -1.12 8.08 37.15 0.30 -0.82 16 4 C -0.15 -1.04 8.00 37.16 0.30 -0.74 16 5 C 0.52 6.44 6.47 -10.98 -0.07 6.37 16 6 O -0.54 -8.69 15.44 5.56 0.09 -8.60 16 7 N -0.61 -7.03 2.99 -172.18 -0.52 -7.54 16 8 C 0.12 1.45 6.64 -3.36 -0.02 1.43 16 9 C 0.04 0.54 5.48 -3.46 -0.02 0.52 16 10 N -0.54 -7.58 4.63 -234.02 -1.08 -8.66 16 11 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 12 C -0.10 -2.13 5.08 -26.73 -0.14 -2.27 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.04 0.41 5.49 -3.70 -0.02 0.39 16 23 C 0.09 0.85 4.05 -3.61 -0.01 0.83 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.37 8.03 -51.93 -0.42 -0.05 16 28 H 0.07 0.53 4.92 -51.93 -0.26 0.28 16 29 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 4.74 -51.93 -0.25 0.20 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.24 7.04 -51.93 -0.37 0.87 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.40 6.16 -51.93 -0.32 1.08 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.95 6.40 -51.93 -0.33 0.62 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.03 0.40 8.04 -51.92 -0.42 -0.02 16 45 H 0.09 0.86 7.99 -51.93 -0.41 0.45 16 46 H 0.11 0.75 2.77 -51.93 -0.14 0.61 16 47 H 0.08 0.69 8.05 -51.93 -0.42 0.28 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -32.30 355.07 -8.88 -41.18 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -8.35 Total: -4.04 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.08 Total: -8.11 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.86 Total: -42.52 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.30 -8.88 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338731664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.840 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds