Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47130 * 119.99890 * 2 1 3 5 5 C 1.50702 * 109.47173 * 239.99359 * 2 1 3 6 6 O 1.21280 * 119.99798 * 5.57638 * 5 2 1 7 7 N 1.34779 * 120.00027 * 185.56722 * 5 2 1 8 8 C 1.47077 * 120.88110 * 174.59284 * 7 5 2 9 9 C 1.53697 * 108.27609 * 128.75279 * 8 7 5 10 10 N 1.46897 * 109.25289 * 54.08634 * 9 8 7 11 11 C 1.46906 * 110.99993 * 172.60276 * 10 9 8 12 12 C 1.52996 * 109.47127 * 294.30326 * 11 10 9 13 13 C 1.53005 * 109.46805 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46695 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00303 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99597 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00249 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99837 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46742 * 60.00154 * 18 16 14 20 20 H 1.48501 * 109.46895 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46844 * 300.00131 * 18 16 14 22 22 C 1.46898 * 111.27182 * 296.75597 * 10 9 8 23 23 C 1.47077 * 120.88251 * 354.87443 * 7 5 2 24 24 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47043 * 60.00230 * 1 2 3 26 26 H 1.08999 * 109.46964 * 299.99876 * 1 2 3 27 27 H 1.08997 * 109.47602 * 76.98139 * 3 2 1 28 28 H 1.08998 * 109.47728 * 196.98836 * 3 2 1 29 29 H 1.08999 * 109.46910 * 316.98359 * 3 2 1 30 30 H 1.09001 * 109.47286 * 66.82714 * 4 2 1 31 31 H 1.08999 * 109.47319 * 186.83142 * 4 2 1 32 32 H 1.09006 * 109.47198 * 306.82965 * 4 2 1 33 33 H 1.08999 * 109.63066 * 248.52954 * 8 7 5 34 34 H 1.09001 * 109.62553 * 9.10535 * 8 7 5 35 35 H 1.08996 * 109.65211 * 294.07996 * 9 8 7 36 36 H 1.08999 * 109.44126 * 173.96063 * 9 8 7 37 37 H 1.09003 * 109.46556 * 54.30086 * 11 10 9 38 38 H 1.09001 * 109.47145 * 174.29924 * 11 10 9 39 39 H 1.09003 * 109.47206 * 299.99361 * 12 11 10 40 40 H 1.08996 * 109.47122 * 60.00123 * 12 11 10 41 41 H 1.09003 * 109.46780 * 299.99699 * 13 12 11 42 42 H 1.09001 * 109.47244 * 59.99736 * 13 12 11 43 43 H 0.97005 * 120.00044 * 180.02562 * 17 16 14 44 44 H 1.09010 * 109.48807 * 303.14312 * 22 10 9 45 45 H 1.09001 * 109.49874 * 183.06926 * 22 10 9 46 46 H 1.09006 * 109.63028 * 350.89229 * 23 7 5 47 47 H 1.08999 * 109.63259 * 111.47482 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0323 -0.7106 -1.2304 6 8 1.2489 -1.0823 -2.0782 7 7 3.3522 -0.9327 -1.3886 8 6 3.8538 -1.7261 -2.5209 9 6 4.9586 -0.9201 -3.2224 10 7 5.9765 -0.5335 -2.2364 11 6 7.1360 0.0861 -2.8920 12 6 7.8418 -0.9515 -3.7672 13 6 9.0490 -0.3059 -4.4505 14 6 9.7445 -1.3281 -5.3120 15 1 9.3639 -2.3373 -5.3665 16 6 10.8668 -0.9748 -6.0309 17 7 11.3306 0.2540 -5.9642 18 14 11.7295 -2.2421 -7.0983 19 1 10.7866 -2.7450 -8.1295 20 1 12.9004 -1.6152 -7.7626 21 1 12.1868 -3.3733 -6.2519 22 6 5.4144 0.3553 -1.2107 23 6 4.3288 -0.3933 -0.4302 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.9429 1.8622 1.0012 28 1 3.0877 1.4574 -0.3002 29 1 1.4527 2.0354 -0.7011 30 1 1.7798 -1.7781 1.1903 31 1 3.1231 -0.6166 1.3125 32 1 1.5803 -0.2828 2.1351 33 1 4.2601 -2.6693 -2.1556 34 1 3.0407 -1.9209 -3.2202 35 1 4.5296 -0.0249 -3.6725 36 1 5.4178 -1.5329 -3.9981 37 1 6.8011 0.9174 -3.5124 38 1 7.8281 0.4538 -2.1345 39 1 8.1766 -1.7828 -3.1468 40 1 7.1496 -1.3191 -4.5247 41 1 8.7137 0.5252 -5.0710 42 1 9.7413 0.0621 -3.6933 43 1 12.1200 0.5026 -6.4702 44 1 4.9791 1.2329 -1.6888 45 1 6.2042 0.6672 -0.5272 46 1 3.8299 0.2937 0.2535 47 1 4.7799 -1.2107 0.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338731664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = -54.979405 kcal Electronic energy + Delta-G solvation = -23062.443448 eV Core-core repulsion = 19858.225247 eV Total energy + Delta-G solvation = -3204.218201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79525 -39.41227 -37.02750 -36.47569 -35.18115 -33.11953 -32.18271 -29.51108 -28.27208 -28.18038 -27.27706 -25.08004 -24.52095 -23.38577 -21.76619 -21.31388 -19.72820 -18.49056 -17.76797 -17.08872 -16.65120 -16.51203 -16.45712 -15.85620 -15.77683 -15.62578 -15.18985 -14.91204 -14.70407 -14.32519 -13.88506 -13.66013 -13.36266 -13.22146 -13.10462 -13.02868 -12.97385 -12.67215 -12.64279 -12.58285 -12.49629 -12.32642 -12.26136 -12.03410 -11.92085 -11.51987 -11.39710 -11.33350 -11.09215 -10.59211 -10.53656 -9.84201 -9.29174 -8.20285 -6.31033 1.39823 1.42716 1.50611 1.55953 1.92259 2.40683 2.86618 3.12931 3.34802 3.77567 3.87407 3.89103 3.92523 3.99476 4.17532 4.20936 4.26593 4.33912 4.43800 4.53466 4.62754 4.68400 4.69614 4.71603 4.73874 4.79130 4.83253 4.92397 4.94470 4.97200 5.01048 5.06577 5.07933 5.23133 5.25696 5.31392 5.33886 5.45131 5.51991 5.74346 5.86224 5.96973 6.09623 6.26975 6.39700 6.85863 7.09768 7.38165 8.91379 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041576 B = 0.002857 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.309263 B = 9796.727659 C =10097.955885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.151 4.151 5 C 0.515 3.485 6 O -0.590 6.590 7 N -0.610 5.610 8 C 0.121 3.879 9 C 0.044 3.956 10 N -0.538 5.538 11 C 0.069 3.931 12 C -0.090 4.090 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.033 3.967 23 C 0.095 3.905 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.085 0.915 37 H 0.020 0.980 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.046 0.954 41 H -0.013 1.013 42 H -0.005 1.005 43 H 0.264 0.736 44 H 0.032 0.968 45 H 0.107 0.893 46 H 0.136 0.864 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.050 1.263 18.091 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.211 4.211 4 C -0.208 4.208 5 C 0.305 3.695 6 O -0.471 6.471 7 N -0.342 5.342 8 C -0.002 4.002 9 C -0.085 4.085 10 N -0.263 5.263 11 C -0.058 4.058 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.095 4.095 23 C -0.026 4.026 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.006 0.994 42 H 0.013 0.987 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.125 0.875 46 H 0.154 0.846 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.166 0.756 17.827 26.186 hybrid contribution 0.496 0.261 -1.688 1.779 sum -18.669 1.016 16.139 24.699 Atomic orbital electron populations 1.21665 0.92019 1.02016 1.02497 1.20855 0.97968 0.97156 0.92677 1.22203 1.01659 0.92482 1.04734 1.22239 1.03141 0.99972 0.95458 1.21410 0.81373 0.78409 0.88278 1.90648 1.56158 1.54332 1.45918 1.48258 1.06091 1.52581 1.27282 1.21700 0.95524 0.94281 0.88745 1.22528 0.92332 0.98862 0.94786 1.61981 1.07135 1.42787 1.14373 1.22025 0.91811 0.95163 0.96830 1.21403 0.96308 0.97841 0.97224 1.18957 0.92990 0.94949 0.94193 1.21674 1.11554 0.97628 1.27302 0.92328 1.25970 0.98068 0.97424 0.98338 1.70084 1.24421 1.19716 1.43162 0.85529 0.77877 0.78979 0.78852 1.19350 1.20778 1.19060 1.22670 0.98169 0.93682 0.94961 1.22713 0.88771 0.99817 0.91325 0.93433 0.93690 0.89226 0.88172 0.91042 0.92732 0.93134 0.89700 0.88931 0.89942 0.90175 0.95802 0.89715 0.96154 0.90330 0.92599 0.93503 0.99419 0.98693 0.92761 0.94968 0.87530 0.84643 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 7.71 71.98 0.55 -1.41 16 2 C -0.08 -1.27 0.75 -52.93 -0.04 -1.31 16 3 C -0.15 -1.76 8.08 71.98 0.58 -1.18 16 4 C -0.15 -1.52 8.00 71.98 0.58 -0.95 16 5 C 0.52 12.35 6.47 87.66 0.57 12.92 16 6 O -0.59 -19.33 15.44 -3.03 -0.05 -19.38 16 7 N -0.61 -13.37 2.99 -817.06 -2.44 -15.81 16 8 C 0.12 3.02 6.64 86.50 0.57 3.59 16 9 C 0.04 1.21 5.48 86.54 0.47 1.68 16 10 N -0.54 -14.59 4.63 -894.31 -4.14 -18.73 16 11 C 0.07 2.29 4.96 86.30 0.43 2.72 16 12 C -0.09 -3.68 5.08 30.59 0.16 -3.53 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -31.25 9.11 25.60 0.23 -31.01 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 18 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.03 0.67 5.49 86.38 0.47 1.14 16 23 C 0.10 1.50 4.05 86.35 0.35 1.85 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.59 8.03 -2.39 -0.02 0.58 16 28 H 0.07 0.83 4.92 -2.39 -0.01 0.82 16 29 H 0.05 0.75 8.02 -2.39 -0.02 0.73 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.67 4.74 -2.39 -0.01 0.65 16 32 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.22 7.04 -2.39 -0.02 2.20 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 2.51 6.16 -2.39 -0.01 2.50 16 37 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 38 H 0.08 2.50 7.97 -2.39 -0.02 2.48 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 1.90 6.40 -2.39 -0.02 1.89 16 41 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.03 0.68 8.04 -2.38 -0.02 0.66 16 45 H 0.11 1.76 7.99 -2.39 -0.02 1.74 16 46 H 0.14 1.39 2.77 -2.38 -0.01 1.38 16 47 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 Total: -1.00 -71.49 355.07 2.14 -69.34 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.92 Total: 8.31 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.54 Total: -13.49 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -6.30 Total: -91.38 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.49 2.14 -69.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338731664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.363 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds