Wall clock time and date at job start Tue Mar 31 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47248 * 2 1 4 4 C 1.53000 * 109.47248 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99811 * 190.00007 * 5 4 3 7 7 C 1.50696 * 109.47475 * 162.34049 * 6 5 4 8 8 O 1.21289 * 119.99671 * 1.42263 * 7 6 5 9 9 N 1.34779 * 120.00561 * 181.42286 * 7 6 5 10 10 C 1.46502 * 119.99637 * 359.97438 * 9 7 6 11 11 C 1.53000 * 109.47216 * 89.99815 * 10 9 7 12 12 C 1.46494 * 120.00366 * 179.97438 * 9 7 6 13 13 C 1.50705 * 109.47233 * 89.99703 * 12 9 7 14 14 H 1.08001 * 119.99570 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99682 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00441 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99482 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47330 * 59.99989 * 17 15 13 19 19 H 1.48502 * 109.47126 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46952 * 299.99836 * 17 15 13 21 21 C 1.46900 * 111.00165 * 66.05107 * 5 4 3 22 22 C 1.52994 * 117.50350 * 127.67180 * 21 5 4 23 23 C 1.52997 * 117.50303 * 59.00633 * 21 5 4 24 24 H 1.09004 * 109.47480 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47210 * 299.99883 * 1 2 3 26 26 H 1.08995 * 109.47280 * 60.00054 * 1 2 3 27 27 H 1.08999 * 109.46989 * 239.99491 * 2 1 3 28 28 H 1.09005 * 109.46739 * 119.99984 * 2 1 3 29 29 H 1.09006 * 109.46920 * 59.99939 * 3 2 1 30 30 H 1.08995 * 109.46936 * 300.00157 * 3 2 1 31 31 H 1.09005 * 109.46739 * 299.99984 * 4 3 2 32 32 H 1.08999 * 109.46989 * 59.99491 * 4 3 2 33 33 H 1.09007 * 109.47178 * 282.34041 * 6 5 4 34 34 H 1.08998 * 109.47397 * 42.34137 * 6 5 4 35 35 H 1.08998 * 109.46682 * 209.99794 * 10 9 7 36 36 H 1.08994 * 109.47051 * 329.99965 * 10 9 7 37 37 H 1.09000 * 109.47146 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47260 * 300.00378 * 11 10 9 39 39 H 1.09011 * 109.46683 * 59.99966 * 11 10 9 40 40 H 1.08992 * 109.47353 * 210.00074 * 12 9 7 41 41 H 1.09001 * 109.47051 * 330.00135 * 12 9 7 42 42 H 0.97004 * 119.99883 * 180.02562 * 16 15 13 43 43 H 1.09012 * 115.54395 * 273.33754 * 21 5 4 44 44 H 1.09000 * 117.49744 * 359.97438 * 22 21 5 45 45 H 1.09002 * 117.50245 * 145.01484 * 22 21 5 46 46 H 1.08998 * 117.50052 * 214.98139 * 23 21 5 47 47 H 1.09000 * 117.49920 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0596 2.8274 0.0000 6 6 5.5086 2.8734 -0.2375 7 6 5.9045 4.2647 -0.6599 8 8 5.0667 5.1390 -0.7288 9 7 7.1896 4.5376 -0.9610 10 6 8.2016 3.4817 -0.8772 11 6 8.3050 2.7662 -2.2256 12 6 7.5743 5.8901 -1.3721 13 6 7.9514 6.6966 -0.1561 14 1 7.9091 6.2465 0.8247 15 6 8.3514 8.0086 -0.2961 16 7 8.4034 8.5564 -1.4905 17 14 8.8195 9.0080 1.2111 18 1 9.9612 8.3566 1.9021 19 1 9.2094 10.3790 0.7945 20 1 7.6594 9.0832 2.1350 21 6 3.7097 3.5101 1.2528 22 6 4.8387 4.2011 2.0201 23 6 4.2302 2.9033 2.5573 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9562 -0.8899 31 1 3.9329 0.9287 0.8909 32 1 3.9337 0.9284 -0.8891 33 1 6.0357 2.6081 0.6790 34 1 5.7703 2.1665 -1.0248 35 1 9.1662 3.9222 -0.6248 36 1 7.9164 2.7654 -0.1068 37 1 9.0583 1.9808 -2.1634 38 1 7.3404 2.3258 -2.4782 39 1 8.5902 3.4826 -2.9962 40 1 8.4259 5.8353 -2.0501 41 1 6.7362 6.3679 -1.8793 42 1 8.6852 9.4794 -1.5889 43 1 2.7262 3.9798 1.2734 44 1 5.8412 4.1488 1.5955 45 1 4.5980 5.1251 2.5457 46 1 3.5894 2.9741 3.4362 47 1 4.8319 1.9972 2.4860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339092662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:22 Heat of formation + Delta-G solvation = -8.606255 kcal Electronic energy + Delta-G solvation = -23441.182262 eV Core-core repulsion = 20238.974952 eV Total energy + Delta-G solvation = -3202.207310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90708 -37.93307 -35.47847 -35.06394 -33.13040 -32.68406 -30.07521 -29.56631 -27.45418 -25.77025 -23.52462 -22.98698 -22.54514 -21.99390 -21.23930 -19.57006 -18.08929 -17.01264 -16.47188 -16.20746 -15.64952 -15.42623 -14.85865 -14.33989 -14.14818 -13.86442 -13.75503 -13.30984 -13.29069 -12.99475 -12.67506 -12.47825 -12.07306 -11.96761 -11.80129 -11.57374 -11.35955 -11.18558 -11.11486 -11.05086 -11.02915 -10.87795 -10.70342 -10.62441 -10.47879 -10.39721 -10.09709 -9.89193 -9.59382 -8.81022 -8.39478 -8.02332 -7.56154 -6.00195 -4.04686 3.33324 3.37969 3.40227 3.54579 3.65506 4.01690 4.24942 4.48218 4.73263 4.85897 5.00657 5.02383 5.07055 5.12744 5.17629 5.25988 5.32353 5.34848 5.40073 5.51298 5.54519 5.57958 5.67340 5.69881 5.71375 5.75323 5.81941 5.83412 5.99331 6.05117 6.16259 6.19022 6.25986 6.27839 6.29380 6.38338 6.50782 6.98710 7.19764 7.22821 7.52111 7.64126 7.97140 8.28958 8.53198 8.95881 9.25200 9.60483 11.07744 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.004205 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.416652 B = 6657.930283 C = 7284.471097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.113 4.113 4 C 0.058 3.942 5 N -0.489 5.489 6 C 0.029 3.971 7 C 0.508 3.492 8 O -0.515 6.515 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.169 4.169 12 C 0.249 3.751 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.043 3.957 22 C -0.170 4.170 23 C -0.225 4.225 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.263 0.737 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 -18.207 3.800 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.211 5.211 6 C -0.102 4.102 7 C 0.293 3.707 8 O -0.389 6.389 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.228 4.228 12 C 0.130 3.870 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.066 4.066 22 C -0.207 4.207 23 C -0.264 4.264 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.139 0.861 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.391 -17.288 3.243 19.488 hybrid contribution 0.922 0.179 1.492 1.763 sum -7.468 -17.108 4.734 19.258 Atomic orbital electron populations 1.21756 0.95888 1.01287 1.01942 1.21488 0.95868 0.96993 1.01722 1.21547 0.94350 0.96215 1.03029 1.22170 0.95981 0.88329 1.00449 1.61646 1.12246 1.14836 1.32375 1.22208 0.89228 0.97618 1.01153 1.20012 0.82736 0.89233 0.78715 1.90676 1.49553 1.47500 1.51219 1.48260 1.06198 1.12295 1.66958 1.21374 0.94026 0.90100 0.96231 1.22229 1.01172 1.00414 0.98936 1.19206 0.96200 0.76081 0.95501 1.21394 1.44705 0.96656 0.93487 0.92657 1.24920 0.95655 0.97494 0.95990 1.69922 1.47754 1.13994 1.21764 0.86598 0.78809 0.79143 0.83093 1.20328 1.21223 1.20212 1.22601 0.99121 1.00743 0.84094 1.23283 0.98777 0.95914 1.02751 1.23456 1.05808 0.97644 0.99541 0.93025 0.92806 0.92642 0.92118 0.92326 0.91785 0.91045 0.94771 0.91031 0.92214 0.88938 0.90044 0.92232 0.92309 0.93123 0.91973 0.95236 0.93958 0.92728 0.86064 0.88238 0.88335 0.88842 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.11 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C 0.06 0.67 4.85 -3.83 -0.02 0.65 16 5 N -0.49 -7.42 4.34 -228.09 -0.99 -8.41 16 6 C 0.03 0.46 3.53 -4.98 -0.02 0.44 16 7 C 0.51 10.63 5.73 -10.99 -0.06 10.57 16 8 O -0.51 -13.10 14.79 5.55 0.08 -13.02 16 9 N -0.60 -12.76 2.46 -175.06 -0.43 -13.19 16 10 C 0.11 1.73 5.91 -4.04 -0.02 1.70 16 11 C -0.17 -2.29 10.22 37.16 0.38 -1.91 16 12 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 13 C -0.52 -14.85 9.39 -34.44 -0.32 -15.18 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.04 0.66 4.55 -67.72 -0.31 0.35 16 22 C -0.17 -2.81 8.48 -26.70 -0.23 -3.03 16 23 C -0.23 -2.89 9.27 -26.69 -0.25 -3.14 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.37 6.87 -51.93 -0.36 0.01 16 32 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 33 H 0.06 0.87 5.32 -51.93 -0.28 0.59 16 34 H 0.09 1.25 6.73 -51.93 -0.35 0.91 16 35 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.06 0.81 6.48 -51.93 -0.34 0.47 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16 39 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.12 1.83 8.03 -51.92 -0.42 1.41 16 44 H 0.10 1.85 4.92 -51.93 -0.26 1.59 16 45 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.09 1.04 7.15 -51.93 -0.37 0.67 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -32.41 368.27 -9.49 -41.90 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.52 Total: 0.95 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.90 Total: -4.66 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.68 Total: -47.70 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.41 -9.49 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339092662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.293 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds