Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46813 * 2 1 4 4 C 1.53005 * 109.46868 * 119.99442 * 2 1 3 5 5 C 1.53000 * 109.46743 * 175.00465 * 4 2 1 6 6 N 1.46897 * 109.47126 * 173.47897 * 5 4 2 7 7 C 1.46900 * 111.00012 * 185.32850 * 6 5 4 8 8 C 1.50701 * 109.47139 * 162.63614 * 7 6 5 9 9 O 1.21296 * 120.00010 * 3.62557 * 8 7 6 10 10 N 1.34781 * 120.00164 * 183.63301 * 8 7 6 11 11 C 1.37097 * 119.99786 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00313 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99572 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99854 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47322 * 59.99594 * 15 13 11 17 17 H 1.48504 * 109.47090 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47216 * 299.99262 * 15 13 11 19 19 C 1.46898 * 111.00310 * 61.37081 * 6 5 4 20 20 C 1.54263 * 110.02860 * 23.48043 * 19 6 5 21 21 C 1.54969 * 104.15813 * 217.13548 * 20 19 6 22 22 C 1.54889 * 102.77471 * 37.88735 * 21 20 19 23 23 C 1.53876 * 110.03341 * 266.26010 * 19 6 5 24 24 H 1.08995 * 109.47372 * 300.00115 * 1 2 3 25 25 H 1.08999 * 109.47078 * 60.00297 * 1 2 3 26 26 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47372 * 239.99884 * 2 1 3 28 28 H 1.08999 * 109.47057 * 299.99716 * 3 2 1 29 29 H 1.09003 * 109.47522 * 59.99708 * 3 2 1 30 30 H 1.09000 * 109.47188 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46901 * 55.00616 * 4 2 1 32 32 H 1.08996 * 109.47493 * 294.99979 * 4 2 1 33 33 H 1.08996 * 109.47611 * 53.47426 * 5 4 2 34 34 H 1.09005 * 109.47029 * 293.47620 * 5 4 2 35 35 H 1.08995 * 109.47368 * 282.63242 * 7 6 5 36 36 H 1.09001 * 109.47030 * 42.63831 * 7 6 5 37 37 H 0.96997 * 119.99613 * 359.97438 * 10 8 7 38 38 H 0.97000 * 120.00087 * 180.02562 * 14 13 11 39 39 H 1.09002 * 110.01402 * 144.86782 * 19 6 5 40 40 H 1.08994 * 110.48805 * 335.78151 * 20 19 6 41 41 H 1.09000 * 110.48759 * 98.42996 * 20 19 6 42 42 H 1.09004 * 110.72051 * 279.57617 * 21 20 19 43 43 H 1.09003 * 110.92631 * 156.29903 * 21 20 19 44 44 H 1.09008 * 110.48102 * 203.40569 * 22 21 20 45 45 H 1.08993 * 110.59821 * 80.82312 * 22 21 20 46 46 H 1.08996 * 110.03073 * 238.56574 * 23 19 6 47 47 H 1.09002 * 110.02945 * 0.02562 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8308 1.1881 6 7 4.0674 -1.3810 2.4541 7 6 5.5362 -1.3833 2.4808 8 6 6.0124 -1.5387 3.9021 9 8 5.2095 -1.7038 4.7962 10 7 7.3306 -1.4941 4.1799 11 6 7.7638 -1.6361 5.4728 12 1 7.0489 -1.7832 6.2689 13 6 9.1227 -1.5896 5.7592 14 7 9.9926 -1.4101 4.7907 15 14 9.7130 -1.7823 7.5209 16 1 9.2805 -3.1021 8.0464 17 1 11.1951 -1.6965 7.5585 18 1 9.1329 -0.7018 8.3583 19 6 3.5344 -2.7292 2.6907 20 6 3.1223 -3.3768 1.3526 21 6 1.8411 -4.1775 1.6977 22 6 1.1196 -3.2507 2.7074 23 6 2.2618 -2.6493 3.5521 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 3.9940 0.1578 1.0257 34 1 3.8490 -1.4896 0.3675 35 1 5.9092 -2.2126 1.8800 36 1 5.9084 -0.4432 2.0737 37 1 7.9726 -1.3624 3.4649 38 1 10.9412 -1.3781 4.9905 39 1 4.2840 -3.3447 3.1882 40 1 2.9043 -2.6104 0.6090 41 1 3.9058 -4.0449 0.9949 42 1 2.0952 -5.1306 2.1616 43 1 1.2282 -4.3329 0.8098 44 1 0.4420 -3.8271 3.3373 45 1 0.5763 -2.4634 2.1848 46 1 2.3935 -3.2268 4.4671 47 1 2.0395 -1.6100 3.7941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343050633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -34.296078 kcal Electronic energy + Delta-G solvation = -23633.543263 eV Core-core repulsion = 20430.221959 eV Total energy + Delta-G solvation = -3203.321305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02548 -37.83047 -36.17211 -34.59543 -33.69124 -31.14969 -29.68256 -28.44983 -27.94704 -27.24958 -25.63692 -23.92096 -22.34128 -20.58522 -20.07860 -19.26143 -18.71947 -17.77661 -16.49280 -16.00595 -15.52815 -14.76679 -14.56778 -14.49708 -14.17305 -13.91047 -13.81510 -13.59398 -13.34812 -12.85521 -12.56277 -12.32028 -12.02889 -11.82808 -11.78835 -11.48183 -11.41781 -11.20633 -11.01232 -10.97725 -10.82933 -10.72609 -10.65528 -10.55195 -10.40676 -10.33847 -10.15268 -10.01597 -9.90902 -9.41183 -8.34833 -7.88828 -7.70335 -6.35478 -3.75829 3.23812 3.28727 3.33339 3.96867 4.06779 4.28998 4.79289 4.82445 4.84742 4.87590 4.94132 5.05317 5.18605 5.30549 5.39059 5.49199 5.52623 5.54865 5.62913 5.68737 5.72947 5.74532 5.77272 5.82250 5.83548 5.88703 5.93964 5.96067 6.02084 6.04446 6.10010 6.10991 6.20020 6.25583 6.35874 6.41516 6.44902 6.55448 6.65349 6.74133 7.48815 7.57212 7.60668 8.13455 8.69952 9.25251 9.62768 10.15621 10.82551 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.003927 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.003152 B = 7128.443393 C = 7752.255755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.136 4.136 5 C 0.049 3.951 6 N -0.508 5.508 7 C 0.044 3.956 8 C 0.446 3.554 9 O -0.573 6.573 10 N -0.569 5.569 11 C -0.296 4.296 12 H 0.101 0.899 13 C 0.021 3.979 14 N -0.905 5.905 15 Si 0.929 3.071 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.094 3.906 20 C -0.179 4.179 21 C -0.120 4.120 22 C -0.134 4.134 23 C -0.103 4.103 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.163 -0.168 -11.973 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.173 4.173 5 C -0.079 4.079 6 N -0.230 5.230 7 C -0.088 4.088 8 C 0.231 3.769 9 O -0.456 6.456 10 N -0.206 5.206 11 C -0.426 4.426 12 H 0.119 0.881 13 C -0.180 4.180 14 N -0.546 5.546 15 Si 0.756 3.244 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.014 4.014 20 C -0.217 4.217 21 C -0.158 4.158 22 C -0.171 4.171 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.637 0.051 -10.949 19.090 hybrid contribution 1.284 -0.504 -0.229 1.398 sum -14.353 -0.454 -11.179 18.198 Atomic orbital electron populations 1.21821 0.95466 1.01477 1.01517 1.21100 0.95478 0.96421 0.98539 1.21903 1.01326 0.96027 1.01379 1.22293 0.94925 1.02428 0.97615 1.22317 0.95782 0.99192 0.90568 1.61850 1.06504 1.22439 1.32257 1.21894 0.88519 1.01443 0.96909 1.19803 0.83165 0.84194 0.89730 1.90516 1.53799 1.53848 1.47463 1.41864 1.05226 1.63985 1.09562 1.19633 0.91625 1.46218 0.85116 0.88074 1.25229 0.95680 0.97566 0.99534 1.69606 1.02510 1.50348 1.32179 0.85944 0.77223 0.79032 0.82164 1.19999 1.21048 1.19945 1.22221 0.97306 0.88189 0.93731 1.23542 0.97853 1.00300 1.00009 1.22411 0.96315 0.98445 0.98590 1.22613 0.98077 0.98622 0.97826 1.22088 0.92649 1.01884 0.97545 0.92664 0.93062 0.92883 0.91730 0.93283 0.92600 0.92375 0.89193 0.90982 0.91008 0.94528 0.93496 0.89782 0.77623 0.91947 0.90341 0.88737 0.92428 0.91802 0.92220 0.92264 0.91135 0.91972 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.10 -0.91 2.92 -90.62 -0.26 -1.17 16 3 C -0.15 -1.40 8.96 37.16 0.33 -1.07 16 4 C -0.14 -1.54 2.87 -26.73 -0.08 -1.61 16 5 C 0.05 0.64 4.30 -3.83 -0.02 0.62 16 6 N -0.51 -8.47 3.96 -226.75 -0.90 -9.37 16 7 C 0.04 0.80 5.34 -4.98 -0.03 0.78 16 8 C 0.45 10.70 7.33 -10.98 -0.08 10.62 16 9 O -0.57 -15.58 14.96 5.54 0.08 -15.49 16 10 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 11 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 15 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.09 1.51 2.15 -66.60 -0.14 1.37 16 20 C -0.18 -2.27 5.29 -25.03 -0.13 -2.41 16 21 C -0.12 -1.34 6.73 -24.70 -0.17 -1.51 16 22 C -0.13 -1.56 6.12 -25.07 -0.15 -1.71 16 23 C -0.10 -1.57 5.77 -25.61 -0.15 -1.72 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 31 H 0.09 1.00 2.24 -51.93 -0.12 0.88 16 32 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 33 H 0.07 0.92 6.10 -51.93 -0.32 0.61 16 34 H 0.04 0.45 6.01 -51.93 -0.31 0.14 16 35 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 37 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.08 1.52 6.89 -51.93 -0.36 1.16 16 40 H 0.09 1.12 3.46 -51.93 -0.18 0.94 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.07 0.75 6.01 -51.93 -0.31 0.44 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.26 7.12 -51.93 -0.37 0.89 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -30.22 351.01 -8.66 -38.88 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.00 Total: 10.06 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.77 Total: -6.75 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.23 Total: -48.37 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.22 -8.66 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343050633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.588 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds