Wall clock time and date at job start Tue Mar 31 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46917 * 2 1 4 4 C 1.53003 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46930 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.43827 * 52.45623 * 5 4 3 7 7 C 1.54272 * 110.48217 * 289.77181 * 5 4 3 8 8 C 1.53877 * 106.59365 * 217.71432 * 7 5 4 9 9 C 1.54264 * 106.60417 * 0.02562 * 8 7 5 10 10 C 1.54886 * 110.48156 * 175.00118 * 5 4 3 11 11 H 1.09003 * 110.75911 * 38.11942 * 10 5 4 12 12 N 1.46499 * 110.75683 * 274.93059 * 10 5 4 13 13 C 1.34777 * 120.00477 * 155.00345 * 12 10 5 14 14 O 1.21593 * 119.99804 * 359.97438 * 13 12 10 15 15 N 1.34769 * 120.00509 * 180.02562 * 13 12 10 16 16 C 1.46502 * 120.00120 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.08997 * 109.47363 * 299.99922 * 1 2 3 27 27 H 1.08993 * 109.47366 * 60.00542 * 1 2 3 28 28 H 1.08998 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47363 * 240.00078 * 2 1 3 30 30 H 1.09003 * 109.47325 * 119.99288 * 2 1 3 31 31 H 1.09002 * 109.47482 * 59.99840 * 3 2 1 32 32 H 1.08996 * 109.47150 * 300.00021 * 3 2 1 33 33 H 1.09002 * 109.46941 * 59.99573 * 4 3 2 34 34 H 1.09004 * 109.46551 * 299.99820 * 4 3 2 35 35 H 1.08996 * 110.03360 * 336.99990 * 7 5 4 36 36 H 1.08991 * 110.02897 * 98.43362 * 7 5 4 37 37 H 1.09007 * 110.02936 * 119.28952 * 8 7 5 38 38 H 1.09002 * 110.03096 * 240.66732 * 8 7 5 39 39 H 1.08998 * 110.48468 * 264.93614 * 9 8 7 40 40 H 1.08999 * 110.49041 * 142.28707 * 9 8 7 41 41 H 0.97001 * 119.99636 * 335.00534 * 12 10 5 42 42 H 0.97006 * 120.00118 * 0.02562 * 15 13 12 43 43 H 1.08996 * 109.46899 * 60.00475 * 16 15 13 44 44 H 1.08996 * 109.47057 * 299.99625 * 16 15 13 45 45 H 1.08994 * 109.48028 * 60.00077 * 17 16 15 46 46 H 1.09000 * 109.47206 * 299.99931 * 17 16 15 47 47 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 1 3.6196 3.4512 0.8111 7 6 3.7994 3.5575 -1.3586 8 6 5.0142 4.4504 -1.6663 9 6 5.9908 4.2891 -0.4830 10 6 5.6232 2.9145 0.1284 11 1 6.0734 2.1023 -0.4425 12 7 6.0298 2.8458 1.5341 13 6 7.2444 2.3621 1.8616 14 8 8.0026 1.9822 0.9902 15 7 7.6183 2.2985 3.1548 16 6 8.9383 1.7721 3.5107 17 6 9.1091 1.8089 5.0307 18 6 10.4674 1.2681 5.3968 19 1 11.1413 0.9322 4.6228 20 6 10.8498 1.2031 6.7199 21 7 12.0352 0.7316 7.0393 22 14 9.6842 1.7848 8.0587 23 1 9.9131 3.2284 8.3214 24 1 9.9316 1.0102 9.3013 25 1 8.2813 1.5783 7.6177 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9290 0.8909 35 1 3.6873 2.7995 -2.1338 36 1 2.8963 4.1644 -1.2958 37 1 5.4916 4.1257 -2.5909 38 1 4.7004 5.4906 -1.7537 39 1 5.8393 5.0836 0.2476 40 1 7.0218 4.2864 -0.8368 41 1 5.4248 3.1485 2.2293 42 1 7.0130 2.6005 3.8501 43 1 9.7109 2.3824 3.0431 44 1 9.0259 0.7437 3.1605 45 1 8.3366 1.1985 5.4982 46 1 9.0214 2.8372 5.3814 47 1 12.3041 0.6856 7.9702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343758809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:05 Heat of formation + Delta-G solvation = -78.776247 kcal Electronic energy + Delta-G solvation = -22115.167262 eV Core-core repulsion = 18909.917153 eV Total energy + Delta-G solvation = -3205.250110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.03209 -38.48409 -35.72182 -34.87727 -33.58228 -32.67389 -31.59874 -30.08503 -27.66955 -27.31454 -24.68142 -23.30829 -21.52091 -21.05142 -20.70683 -20.48485 -19.85574 -17.84995 -16.93906 -16.56548 -15.75708 -15.32946 -15.09664 -14.71180 -14.26253 -14.16045 -13.90332 -13.76496 -13.58337 -13.31038 -13.28244 -12.59018 -12.58400 -12.41490 -12.10843 -11.78615 -11.45654 -11.41208 -11.34867 -11.21004 -11.04957 -10.87214 -10.65306 -10.63060 -10.55529 -10.35811 -10.22257 -9.95698 -9.71435 -9.30176 -8.96080 -8.60852 -8.33728 -6.09222 -4.09019 3.02873 3.26291 3.33810 3.35229 3.56116 4.21500 4.39002 4.39225 4.47352 4.64086 4.72542 4.74407 4.84136 5.04993 5.17009 5.23744 5.24931 5.26665 5.31689 5.35046 5.43338 5.48678 5.55405 5.60977 5.71266 5.74605 5.79435 5.82104 5.90336 5.98250 6.06281 6.08549 6.09919 6.18746 6.19373 6.28136 6.60786 6.70295 6.86305 7.09890 7.27485 7.35065 7.69764 8.35261 8.48748 8.94973 8.98178 9.51003 11.03910 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.003010 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.522747 B = 9301.447703 C =10321.010094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.098 4.098 6 H 0.078 0.922 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.138 4.138 10 C 0.164 3.836 11 H 0.096 0.904 12 N -0.745 5.745 13 C 0.699 3.301 14 O -0.595 6.595 15 N -0.743 5.743 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.068 3.932 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.087 5.670 -15.157 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.151 4.151 5 C -0.117 4.117 6 H 0.096 0.904 7 C -0.154 4.154 8 C -0.161 4.161 9 C -0.177 4.177 10 C 0.058 3.942 11 H 0.114 0.886 12 N -0.400 5.400 13 C 0.399 3.601 14 O -0.473 6.473 15 N -0.397 5.397 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.226 0.774 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.210 5.245 -15.800 28.563 hybrid contribution -1.026 0.617 1.542 1.952 sum -24.236 5.862 -14.258 28.724 Atomic orbital electron populations 1.21775 0.96062 1.01508 1.01650 1.21551 0.95673 0.97120 1.02130 1.21624 0.95392 0.96612 1.01915 1.21659 0.95176 0.95636 1.02597 1.22266 0.94644 0.96564 0.98222 0.90401 1.22145 0.98084 0.98712 0.96419 1.22076 0.95824 0.99725 0.98508 1.22768 0.99845 0.97576 0.97482 1.21796 0.93146 0.97876 0.81345 0.88574 1.45119 1.16919 1.69792 1.08155 1.16059 0.81793 0.78656 0.83585 1.90898 1.53022 1.55235 1.48172 1.45528 1.20291 1.68623 1.05258 1.21355 0.80409 0.98156 0.97485 1.19794 0.98590 0.96945 0.90604 1.20928 0.98972 1.42366 0.93714 0.90588 1.25003 0.95049 0.94658 0.98625 1.69906 1.19453 1.46100 1.18286 0.86743 0.81866 0.78955 0.81435 1.20264 1.21308 1.19111 0.92828 0.92889 0.92894 0.92085 0.92000 0.92174 0.92004 0.91711 0.91645 0.91425 0.91717 0.91683 0.91840 0.91474 0.91082 0.77444 0.77665 0.92226 0.92210 0.96061 0.96511 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.81 5.09 -26.73 -0.14 -0.94 16 4 C -0.11 -0.91 4.60 -26.73 -0.12 -1.04 16 5 C -0.10 -0.78 2.48 -88.96 -0.22 -1.00 16 6 H 0.08 0.57 8.02 -51.93 -0.42 0.16 16 7 C -0.12 -0.82 5.69 -25.61 -0.15 -0.97 16 8 C -0.12 -0.98 6.80 -25.61 -0.17 -1.16 16 9 C -0.14 -1.42 6.51 -25.08 -0.16 -1.58 16 10 C 0.16 1.81 2.69 -65.95 -0.18 1.63 16 11 H 0.10 1.29 7.46 -51.93 -0.39 0.90 16 12 N -0.74 -9.06 5.18 -56.74 -0.29 -9.36 16 13 C 0.70 11.91 8.57 -86.92 -0.74 11.17 16 14 O -0.59 -12.68 15.99 5.28 0.08 -12.59 16 15 N -0.74 -12.60 5.56 -65.23 -0.36 -12.96 16 16 C 0.15 3.12 5.61 -4.04 -0.02 3.10 16 17 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 22 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 7.62 -51.93 -0.40 0.00 16 33 H 0.06 0.55 7.96 -51.93 -0.41 0.13 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.47 7.71 -51.93 -0.40 0.06 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.39 3.69 8.58 -40.82 -0.35 3.34 16 42 H 0.39 5.46 8.49 -40.82 -0.35 5.12 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 46 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -32.54 372.98 -10.07 -42.61 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.98 Total: 3.20 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.24 Total: -6.25 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.12 Total: -49.09 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.54 -10.07 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343758809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.164 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds