Wall clock time and date at job start Tue Mar 31 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46917 * 2 1 4 4 C 1.53003 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46930 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.43827 * 52.45623 * 5 4 3 7 7 C 1.54272 * 110.48217 * 289.77181 * 5 4 3 8 8 C 1.53877 * 106.59365 * 217.71432 * 7 5 4 9 9 C 1.54264 * 106.60417 * 0.02562 * 8 7 5 10 10 C 1.54886 * 110.48156 * 175.00118 * 5 4 3 11 11 H 1.09003 * 110.75911 * 38.11942 * 10 5 4 12 12 N 1.46499 * 110.75683 * 274.93059 * 10 5 4 13 13 C 1.34777 * 120.00477 * 155.00345 * 12 10 5 14 14 O 1.21593 * 119.99804 * 359.97438 * 13 12 10 15 15 N 1.34769 * 120.00509 * 180.02562 * 13 12 10 16 16 C 1.46502 * 120.00120 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.08997 * 109.47363 * 299.99922 * 1 2 3 27 27 H 1.08993 * 109.47366 * 60.00542 * 1 2 3 28 28 H 1.08998 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47363 * 240.00078 * 2 1 3 30 30 H 1.09003 * 109.47325 * 119.99288 * 2 1 3 31 31 H 1.09002 * 109.47482 * 59.99840 * 3 2 1 32 32 H 1.08996 * 109.47150 * 300.00021 * 3 2 1 33 33 H 1.09002 * 109.46941 * 59.99573 * 4 3 2 34 34 H 1.09004 * 109.46551 * 299.99820 * 4 3 2 35 35 H 1.08996 * 110.03360 * 336.99990 * 7 5 4 36 36 H 1.08991 * 110.02897 * 98.43362 * 7 5 4 37 37 H 1.09007 * 110.02936 * 119.28952 * 8 7 5 38 38 H 1.09002 * 110.03096 * 240.66732 * 8 7 5 39 39 H 1.08998 * 110.48468 * 264.93614 * 9 8 7 40 40 H 1.08999 * 110.49041 * 142.28707 * 9 8 7 41 41 H 0.97001 * 119.99636 * 335.00534 * 12 10 5 42 42 H 0.97006 * 120.00118 * 0.02562 * 15 13 12 43 43 H 1.08996 * 109.46899 * 60.00475 * 16 15 13 44 44 H 1.08996 * 109.47057 * 299.99625 * 16 15 13 45 45 H 1.08994 * 109.48028 * 60.00077 * 17 16 15 46 46 H 1.09000 * 109.47206 * 299.99931 * 17 16 15 47 47 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 1 3.6196 3.4512 0.8111 7 6 3.7994 3.5575 -1.3586 8 6 5.0142 4.4504 -1.6663 9 6 5.9908 4.2891 -0.4830 10 6 5.6232 2.9145 0.1284 11 1 6.0734 2.1023 -0.4425 12 7 6.0298 2.8458 1.5341 13 6 7.2444 2.3621 1.8616 14 8 8.0026 1.9822 0.9902 15 7 7.6183 2.2985 3.1548 16 6 8.9383 1.7721 3.5107 17 6 9.1091 1.8089 5.0307 18 6 10.4674 1.2681 5.3968 19 1 11.1413 0.9322 4.6228 20 6 10.8498 1.2031 6.7199 21 7 12.0352 0.7316 7.0393 22 14 9.6842 1.7848 8.0587 23 1 9.9131 3.2284 8.3214 24 1 9.9316 1.0102 9.3013 25 1 8.2813 1.5783 7.6177 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9290 0.8909 35 1 3.6873 2.7995 -2.1338 36 1 2.8963 4.1644 -1.2958 37 1 5.4916 4.1257 -2.5909 38 1 4.7004 5.4906 -1.7537 39 1 5.8393 5.0836 0.2476 40 1 7.0218 4.2864 -0.8368 41 1 5.4248 3.1485 2.2293 42 1 7.0130 2.6005 3.8501 43 1 9.7109 2.3824 3.0431 44 1 9.0259 0.7437 3.1605 45 1 8.3366 1.1985 5.4982 46 1 9.0214 2.8372 5.3814 47 1 12.3041 0.6856 7.9702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343758809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:04 Heat of formation + Delta-G solvation = -99.743153 kcal Electronic energy + Delta-G solvation = -22116.076456 eV Core-core repulsion = 18909.917153 eV Total energy + Delta-G solvation = -3206.159303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22008 -39.46969 -36.68444 -36.23046 -34.91369 -34.51223 -32.21902 -31.89133 -28.61977 -27.99811 -26.46963 -23.99890 -22.72323 -22.20632 -22.02845 -21.37693 -20.67020 -19.21446 -18.87143 -17.66211 -16.62427 -16.44518 -16.29967 -16.01985 -15.83351 -15.26839 -15.18390 -14.79178 -14.59544 -14.49080 -14.30704 -13.92488 -13.34839 -13.27672 -13.19742 -13.02655 -12.79773 -12.38614 -12.18116 -12.15936 -12.06796 -11.94250 -11.75824 -11.71867 -11.54483 -11.53090 -11.33063 -11.27840 -11.21367 -11.17010 -10.78450 -10.27746 -9.68300 -8.29581 -6.36941 1.39375 1.42329 1.53635 1.77418 2.18089 2.37441 3.05395 3.35912 3.53402 3.69016 3.87175 4.12130 4.15054 4.28408 4.34992 4.42157 4.45102 4.50792 4.53454 4.57043 4.65192 4.72149 4.75957 4.78053 4.91733 4.95036 5.03423 5.05882 5.13084 5.17267 5.20214 5.25595 5.27336 5.29701 5.37272 5.41907 5.45495 5.48233 5.51953 5.56948 5.66617 5.70870 6.07899 6.23929 6.70431 7.17730 7.27521 7.63820 8.87365 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.003010 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.522747 B = 9301.447703 C =10321.010094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.111 4.111 5 C -0.085 4.085 6 H 0.095 0.905 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.137 4.137 10 C 0.157 3.843 11 H 0.066 0.934 12 N -0.722 5.722 13 C 0.697 3.303 14 O -0.643 6.643 15 N -0.732 5.732 16 C 0.165 3.835 17 C -0.010 4.010 18 C -0.540 4.540 19 H 0.028 0.972 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.236 1.236 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.411 0.589 42 H 0.410 0.590 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.058 7.499 -14.483 32.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.148 4.148 4 C -0.148 4.148 5 C -0.104 4.104 6 H 0.114 0.886 7 C -0.148 4.148 8 C -0.157 4.157 9 C -0.176 4.176 10 C 0.051 3.949 11 H 0.085 0.915 12 N -0.378 5.378 13 C 0.397 3.603 14 O -0.525 6.525 15 N -0.388 5.388 16 C 0.040 3.960 17 C -0.048 4.048 18 C -0.578 4.578 19 H 0.046 0.954 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.159 1.159 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.247 0.753 42 H 0.246 0.754 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.258 7.104 -15.136 31.977 hybrid contribution 0.294 0.000 1.229 1.264 sum -26.963 7.104 -13.907 31.159 Atomic orbital electron populations 1.21764 0.95297 1.01719 1.02088 1.21565 0.96359 0.97283 1.01538 1.21567 0.94034 0.96532 1.02695 1.21622 0.96286 0.95450 1.01487 1.22214 0.91754 0.96855 0.99597 0.88640 1.22142 0.98343 0.98739 0.95624 1.22058 0.95502 1.00972 0.97148 1.22732 0.99037 0.97150 0.98668 1.21943 0.95436 0.97430 0.80064 0.91533 1.44935 1.15276 1.68127 1.09414 1.16219 0.82715 0.78522 0.82893 1.90874 1.54845 1.57270 1.49464 1.45123 1.19123 1.68549 1.05992 1.20849 0.82058 0.96848 0.96198 1.19634 0.95819 0.97676 0.91696 1.21257 1.00836 1.42623 0.93078 0.95395 1.26101 0.97044 0.94581 1.01673 1.70080 1.22065 1.47808 1.19179 0.85509 0.80378 0.78668 0.77118 1.18968 1.21259 1.15933 0.92549 0.92252 0.92881 0.92457 0.92925 0.91526 0.90956 0.92549 0.93197 0.91185 0.89609 0.91988 0.90252 0.90685 0.93856 0.75262 0.75414 0.94270 0.94281 0.94451 0.94601 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.13 -1.63 5.93 30.60 0.18 -1.44 16 3 C -0.11 -1.24 5.09 30.60 0.16 -1.08 16 4 C -0.11 -1.61 4.60 30.60 0.14 -1.47 16 5 C -0.09 -1.15 2.48 -9.72 -0.02 -1.17 16 6 H 0.10 1.02 8.02 -2.39 -0.02 1.00 16 7 C -0.11 -1.24 5.69 31.32 0.18 -1.06 16 8 C -0.12 -1.64 6.80 31.32 0.21 -1.43 16 9 C -0.14 -2.69 6.51 31.66 0.21 -2.48 16 10 C 0.16 3.32 2.69 46.28 0.12 3.44 16 11 H 0.07 1.84 7.46 -2.39 -0.02 1.82 16 12 N -0.72 -16.59 5.18 -451.68 -2.34 -18.93 16 13 C 0.70 23.55 8.57 179.06 1.53 25.08 16 14 O -0.64 -28.28 15.99 -4.01 -0.06 -28.34 16 15 N -0.73 -23.97 5.56 -478.54 -2.66 -26.63 16 16 C 0.17 7.01 5.61 86.38 0.48 7.49 16 17 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 18 C -0.54 -31.25 9.66 25.60 0.25 -31.00 16 19 H 0.03 1.82 7.99 -2.92 -0.02 1.79 16 20 C 0.00 0.17 5.47 84.65 0.46 0.64 16 21 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 22 Si 0.96 42.51 27.47 68.60 1.88 44.39 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.69 7.62 -2.39 -0.02 0.67 16 33 H 0.06 0.91 7.96 -2.39 -0.02 0.89 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 0.78 7.71 -2.39 -0.02 0.76 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 6.53 8.58 -92.71 -0.80 5.73 16 42 H 0.41 10.27 8.49 -92.70 -0.79 9.48 16 43 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 46 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -73.89 372.98 1.15 -72.74 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.71 Total: 22.04 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.74 Total: -5.73 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.70 Total: -105.10 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Total: -73.89 1.15 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343758809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.998 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds