Wall clock time and date at job start Tue Mar 31 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47003 * 2 1 4 4 C 1.53008 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46778 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.43542 * 54.30053 * 5 4 3 7 7 C 1.54891 * 110.48666 * 291.75728 * 5 4 3 8 8 C 1.54892 * 102.74959 * 203.25066 * 7 5 4 9 9 C 1.54264 * 104.19651 * 37.93955 * 8 7 5 10 10 C 1.54224 * 106.63737 * 336.40572 * 9 8 7 11 11 H 1.08998 * 110.14251 * 240.73074 * 10 9 8 12 12 N 1.46503 * 110.08512 * 119.19329 * 10 9 8 13 13 C 1.34776 * 120.00232 * 88.01258 * 12 10 9 14 14 O 1.21582 * 119.99742 * 359.97438 * 13 12 10 15 15 N 1.34774 * 120.00160 * 179.97438 * 13 12 10 16 16 C 1.46499 * 120.00169 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47311 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47135 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00128 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99868 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47154 * 89.99623 * 22 20 18 24 24 H 1.48501 * 109.47290 * 209.99735 * 22 20 18 25 25 H 1.48498 * 109.47149 * 329.99929 * 22 20 18 26 26 H 1.09002 * 109.47242 * 60.00182 * 1 2 3 27 27 H 1.09002 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47614 * 299.99784 * 1 2 3 29 29 H 1.09000 * 109.47339 * 239.99741 * 2 1 3 30 30 H 1.09007 * 109.46876 * 120.00126 * 2 1 3 31 31 H 1.09001 * 109.47272 * 60.00262 * 3 2 1 32 32 H 1.08998 * 109.47570 * 299.99567 * 3 2 1 33 33 H 1.08992 * 109.46998 * 60.00690 * 4 3 2 34 34 H 1.08994 * 109.47206 * 299.99934 * 4 3 2 35 35 H 1.09000 * 110.75322 * 321.56340 * 7 5 4 36 36 H 1.09002 * 110.75658 * 84.93540 * 7 5 4 37 37 H 1.08993 * 110.48715 * 156.62375 * 8 7 5 38 38 H 1.09001 * 110.48596 * 279.13315 * 8 7 5 39 39 H 1.09009 * 110.02966 * 95.67570 * 9 8 7 40 40 H 1.08998 * 110.03852 * 217.06147 * 9 8 7 41 41 H 0.96998 * 119.99871 * 268.00513 * 12 10 9 42 42 H 0.97005 * 119.99786 * 0.02562 * 15 13 12 43 43 H 1.08998 * 109.47299 * 300.00684 * 16 15 13 44 44 H 1.09001 * 109.46526 * 60.00321 * 16 15 13 45 45 H 1.08999 * 109.46671 * 300.00219 * 17 16 15 46 46 H 1.09000 * 109.46835 * 59.99926 * 17 16 15 47 47 H 0.97000 * 120.00081 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6445 3.4422 0.8308 7 6 3.7541 3.5757 -1.3462 8 6 4.8075 4.7094 -1.4127 9 6 6.0829 4.0760 -0.8194 10 6 5.6203 2.9130 0.0816 11 1 5.9375 3.0858 1.1100 12 7 6.1715 1.6471 -0.4082 13 6 7.3837 1.2330 0.0106 14 8 8.0200 1.9102 0.7946 15 7 7.8906 0.0682 -0.4396 16 6 9.2085 -0.3817 0.0152 17 6 9.5448 -1.7219 -0.6420 18 6 10.9002 -2.1849 -0.1736 19 1 11.4651 -1.5838 0.5235 20 6 11.4187 -3.3766 -0.6341 21 7 12.6014 -3.7810 -0.2249 22 14 10.4414 -4.4168 -1.8392 23 1 10.7831 -4.0177 -3.2281 24 1 10.7748 -5.8501 -1.6398 25 1 8.9893 -4.2095 -1.6077 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 3.8810 2.8814 -2.1768 36 1 2.7446 3.9866 -1.3355 37 1 4.9771 5.0124 -2.4458 38 1 4.4884 5.5622 -0.8135 39 1 6.7188 3.6975 -1.6198 40 1 6.6260 4.8136 -0.2285 41 1 5.6640 1.1070 -1.0340 42 1 7.3831 -0.4720 -1.0655 43 1 9.9603 0.3572 -0.2618 44 1 9.1978 -0.5005 1.0987 45 1 8.7930 -2.4610 -0.3652 46 1 9.5555 -1.6027 -1.7254 47 1 12.9660 -4.6196 -0.5486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343758955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:09 Heat of formation + Delta-G solvation = -71.618423 kcal Electronic energy + Delta-G solvation = -22394.180026 eV Core-core repulsion = 19189.240303 eV Total energy + Delta-G solvation = -3204.939723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20449 -38.43625 -35.68756 -34.85840 -33.44535 -32.65310 -31.60114 -30.06684 -27.68449 -27.35182 -24.66465 -23.47738 -21.64787 -21.02367 -20.67838 -20.59663 -19.37905 -18.14799 -16.85691 -16.07876 -15.85807 -15.48144 -15.18598 -14.80457 -14.35860 -14.14072 -14.02163 -13.77665 -13.62941 -13.36155 -13.17460 -12.71887 -12.58156 -12.20556 -11.88329 -11.69741 -11.48070 -11.44523 -11.28669 -11.17532 -10.99300 -10.94487 -10.78824 -10.58876 -10.51627 -10.35923 -10.21208 -9.95407 -9.69899 -9.29935 -8.97481 -8.60799 -8.32918 -6.09181 -4.08950 3.06003 3.26279 3.33776 3.35207 3.58452 4.20021 4.39119 4.39263 4.44010 4.62110 4.70013 4.79920 4.83378 5.03801 5.18495 5.22392 5.23807 5.26552 5.34455 5.40434 5.45031 5.51220 5.55250 5.60274 5.66050 5.73416 5.79848 5.82419 5.89782 5.96022 6.03500 6.09077 6.09837 6.16682 6.21563 6.28582 6.61345 6.73961 6.87240 7.10725 7.27788 7.36064 7.70001 8.36319 8.49099 8.95293 8.99702 9.51073 11.03978 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003407 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.376723 B = 8215.292919 C = 9505.177591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.099 4.099 6 H 0.085 0.915 7 C -0.119 4.119 8 C -0.125 4.125 9 C -0.136 4.136 10 C 0.165 3.835 11 H 0.089 0.911 12 N -0.745 5.745 13 C 0.698 3.302 14 O -0.595 6.595 15 N -0.744 5.744 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.392 0.608 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.184 12.900 -3.394 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.149 4.149 5 C -0.118 4.118 6 H 0.103 0.897 7 C -0.156 4.156 8 C -0.162 4.162 9 C -0.175 4.175 10 C 0.059 3.941 11 H 0.107 0.893 12 N -0.403 5.403 13 C 0.398 3.602 14 O -0.474 6.474 15 N -0.397 5.397 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.223 0.777 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.406 13.362 -2.657 27.951 hybrid contribution -0.769 -1.176 -1.264 1.890 sum -25.175 12.186 -3.921 28.243 Atomic orbital electron populations 1.21775 0.96064 1.01533 1.01622 1.21552 0.95699 0.97063 1.02177 1.21631 0.95300 0.96663 1.01988 1.21575 0.95175 0.95803 1.02304 1.22320 0.94222 0.96667 0.98604 0.89653 1.22591 0.98692 0.97449 0.96893 1.22353 0.95246 0.97832 1.00807 1.22690 0.97544 0.97681 0.99588 1.21415 0.91634 0.82455 0.98619 0.89291 1.45374 1.19116 1.24581 1.51183 1.16078 0.81203 0.81776 0.81155 1.90893 1.60624 1.56942 1.38910 1.45524 1.22215 1.21881 1.50117 1.21349 0.80197 0.96910 0.98934 1.19790 0.98170 0.92008 0.95944 1.20931 1.00601 1.06316 1.28139 0.90592 1.25002 0.94786 0.97370 0.96159 1.69906 1.17035 1.22373 1.44450 0.86746 0.80960 0.79630 0.81688 1.20257 1.21296 1.19117 0.92886 0.92872 0.92861 0.92034 0.91987 0.92107 0.91949 0.91998 0.91421 0.91441 0.91526 0.91777 0.91654 0.91201 0.91277 0.77233 0.77731 0.92260 0.92219 0.96076 0.96520 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.88 5.93 -26.74 -0.16 -1.04 16 3 C -0.12 -0.79 5.08 -26.73 -0.14 -0.92 16 4 C -0.11 -0.84 3.82 -26.72 -0.10 -0.94 16 5 C -0.10 -0.78 2.82 -88.96 -0.25 -1.03 16 6 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 7 C -0.12 -0.83 5.59 -24.74 -0.14 -0.96 16 8 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 9 C -0.14 -1.42 6.61 -25.43 -0.17 -1.59 16 10 C 0.16 1.80 3.13 -66.63 -0.21 1.59 16 11 H 0.09 1.17 7.57 -51.93 -0.39 0.78 16 12 N -0.75 -9.05 4.35 -57.40 -0.25 -9.30 16 13 C 0.70 11.88 8.56 -86.92 -0.74 11.14 16 14 O -0.60 -12.68 16.00 5.29 0.08 -12.60 16 15 N -0.74 -12.62 5.56 -65.23 -0.36 -12.98 16 16 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 17 C -0.02 -0.49 4.15 -27.88 -0.12 -0.61 16 18 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 19 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 22 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 7.46 -51.93 -0.39 0.00 16 33 H 0.06 0.45 6.34 -51.93 -0.33 0.12 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.48 8.00 -51.93 -0.42 0.06 16 36 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.83 7.92 -51.92 -0.41 0.42 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.39 3.81 6.54 -40.82 -0.27 3.54 16 42 H 0.39 5.49 8.49 -40.82 -0.35 5.14 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 46 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -32.48 368.53 -9.96 -42.45 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.82 Total: 3.39 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.28 Total: -6.21 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.16 Total: -49.08 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.48 -9.96 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343758955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.172 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds