Wall clock time and date at job start Tue Mar 31 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46778 * 2 1 4 4 C 1.52997 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47335 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.01759 * 306.38783 * 5 4 3 7 7 C 1.54268 * 110.03434 * 67.83213 * 5 4 3 8 8 C 1.54883 * 104.19887 * 142.89473 * 7 5 4 9 9 C 1.54967 * 102.77635 * 322.08353 * 8 7 5 10 10 C 1.53877 * 110.03203 * 184.99667 * 5 4 3 11 11 H 1.09001 * 110.03143 * 121.37868 * 10 5 4 12 12 N 1.46500 * 110.03095 * 359.97438 * 10 5 4 13 13 C 1.34783 * 119.99649 * 155.68945 * 12 10 5 14 14 O 1.21585 * 119.99913 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99768 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99872 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00094 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46999 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46942 * 119.99666 * 22 20 18 25 25 H 1.48504 * 109.46979 * 239.99580 * 22 20 18 26 26 H 1.08996 * 109.47165 * 60.00509 * 1 2 3 27 27 H 1.09008 * 109.46921 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47061 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.46610 * 240.00119 * 2 1 3 30 30 H 1.08998 * 109.47071 * 120.00259 * 2 1 3 31 31 H 1.08998 * 109.47379 * 59.99673 * 3 2 1 32 32 H 1.08998 * 109.47531 * 299.99977 * 3 2 1 33 33 H 1.08998 * 109.47472 * 59.99452 * 4 3 2 34 34 H 1.09008 * 109.46908 * 299.99754 * 4 3 2 35 35 H 1.09002 * 110.48316 * 261.57240 * 7 5 4 36 36 H 1.08998 * 110.48510 * 24.21465 * 7 5 4 37 37 H 1.09007 * 110.75361 * 80.36966 * 8 7 5 38 38 H 1.09001 * 110.76057 * 203.55765 * 8 7 5 39 39 H 1.08996 * 110.47651 * 279.23312 * 9 8 7 40 40 H 1.09002 * 110.53165 * 156.56726 * 9 8 7 41 41 H 0.96992 * 120.00454 * 335.68846 * 12 10 5 42 42 H 0.97005 * 119.99680 * 0.02562 * 15 13 12 43 43 H 1.09001 * 109.46813 * 60.00258 * 16 15 13 44 44 H 1.08992 * 109.47397 * 300.00319 * 16 15 13 45 45 H 1.09002 * 109.47398 * 300.00326 * 17 16 15 46 46 H 1.09001 * 109.47194 * 60.00507 * 17 16 15 47 47 H 0.97000 * 120.00333 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6311 3.4398 -0.8239 7 6 3.7410 3.5648 1.3427 8 6 4.9694 4.4618 1.6352 9 6 6.1537 3.5920 1.1430 10 6 5.6133 2.9021 -0.1266 11 1 5.9087 3.4651 -1.0120 12 7 6.1253 1.5319 -0.2091 13 6 7.3139 1.2910 -0.7970 14 8 7.9615 2.2108 -1.2585 15 7 7.7852 0.0305 -0.8725 16 6 9.0769 -0.2315 -1.5121 17 6 9.3749 -1.7314 -1.4639 18 6 10.7039 -2.0009 -2.1212 19 1 11.2787 -1.1839 -2.5318 20 6 11.1861 -3.2903 -2.1983 21 7 10.4863 -4.2850 -1.6978 22 14 12.8338 -3.6242 -3.0125 23 1 13.4179 -2.3453 -3.4906 24 1 13.7533 -4.2520 -2.0298 25 1 12.6399 -4.5407 -4.1647 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 2.8402 4.1710 1.2467 36 1 3.6180 2.8187 2.1277 37 1 4.9123 5.3915 1.0690 38 1 5.0535 4.6658 2.7026 39 1 6.4209 2.8504 1.8958 40 1 7.0128 4.2177 0.9009 41 1 5.6089 0.7982 0.1593 42 1 7.2686 -0.7032 -0.5040 43 1 9.8606 0.3115 -0.9838 44 1 9.0422 0.0993 -2.5500 45 1 9.4097 -2.0618 -0.4257 46 1 8.5912 -2.2747 -1.9919 47 1 10.8253 -5.1922 -1.7524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343758957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:12 Heat of formation + Delta-G solvation = -72.956381 kcal Electronic energy + Delta-G solvation = -22318.835425 eV Core-core repulsion = 19113.837684 eV Total energy + Delta-G solvation = -3204.997741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.16754 -38.40483 -35.60953 -34.73228 -33.49540 -32.70092 -31.52626 -29.60885 -27.47417 -27.26211 -24.54354 -23.54971 -21.72092 -21.15074 -20.76284 -20.53691 -19.14419 -18.05412 -16.39758 -16.02863 -15.94992 -15.44914 -15.09089 -14.63323 -14.47891 -14.19184 -13.98138 -13.71503 -13.48457 -13.18377 -13.11520 -12.62323 -12.28092 -12.03878 -11.89759 -11.75280 -11.37943 -11.19893 -11.14818 -11.04121 -10.98181 -10.89397 -10.79159 -10.60265 -10.59298 -10.45149 -10.28566 -9.84614 -9.51939 -9.21494 -8.88879 -8.45918 -8.18823 -6.07327 -4.09639 3.14771 3.29896 3.37512 3.43296 3.66530 4.27218 4.41893 4.43889 4.45431 4.72862 4.74916 4.84427 4.89264 5.08400 5.20628 5.25615 5.29877 5.30257 5.41183 5.43243 5.47819 5.53430 5.59922 5.61910 5.72364 5.76605 5.82955 5.84504 5.92937 6.01562 6.10451 6.12132 6.17685 6.21180 6.36735 6.44126 6.77872 6.83363 7.06672 7.32683 7.60783 7.66480 7.92424 8.29255 8.51256 8.96039 9.08682 9.55045 11.04413 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.003079 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.964814 B = 9090.935325 C =10385.263111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.098 4.098 6 H 0.080 0.920 7 C -0.117 4.117 8 C -0.125 4.125 9 C -0.135 4.135 10 C 0.165 3.835 11 H 0.088 0.912 12 N -0.749 5.749 13 C 0.696 3.304 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.073 12.655 7.327 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.117 4.117 6 H 0.098 0.902 7 C -0.155 4.155 8 C -0.163 4.163 9 C -0.174 4.174 10 C 0.059 3.941 11 H 0.106 0.894 12 N -0.407 5.407 13 C 0.396 3.604 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.231 0.769 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.426 13.295 6.891 24.528 hybrid contribution 0.426 -1.058 -0.063 1.143 sum -19.000 12.237 6.828 23.609 Atomic orbital electron populations 1.21773 0.96070 1.01545 1.01603 1.21560 0.95730 0.97025 1.02233 1.21615 0.95131 0.96706 1.02009 1.21704 0.95544 0.96146 1.02312 1.22060 0.94416 0.96728 0.98547 0.90177 1.22439 0.97893 0.98588 0.96544 1.22480 0.94741 0.98203 1.00875 1.22831 0.98084 0.99073 0.97423 1.21380 0.91733 0.82243 0.98776 0.89360 1.45523 1.21403 1.09384 1.64388 1.16139 0.81200 0.83932 0.79109 1.90872 1.59242 1.43581 1.54126 1.45536 1.24231 1.06179 1.63416 1.21561 0.80944 0.99801 0.95904 1.19327 0.97353 0.87956 0.97844 1.21102 1.03887 0.93065 1.37731 0.92178 1.24999 0.97647 0.96195 0.95509 1.69968 1.38132 0.99567 1.45719 0.86462 0.83656 0.78378 0.79109 1.19568 1.20956 1.20958 0.92862 0.92846 0.92916 0.91891 0.91998 0.91953 0.92093 0.91102 0.91703 0.91664 0.91391 0.91451 0.91566 0.91263 0.91130 0.76875 0.77547 0.92876 0.92875 0.96011 0.96005 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.82 5.07 -26.74 -0.14 -0.95 16 4 C -0.12 -0.94 3.21 -26.73 -0.09 -1.03 16 5 C -0.10 -0.83 2.93 -89.50 -0.26 -1.10 16 6 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.12 -0.86 5.53 -25.07 -0.14 -1.00 16 8 C -0.13 -1.03 6.91 -24.70 -0.17 -1.20 16 9 C -0.14 -1.48 6.54 -25.03 -0.16 -1.65 16 10 C 0.16 1.91 3.21 -66.81 -0.21 1.70 16 11 H 0.09 1.22 7.59 -51.93 -0.39 0.82 16 12 N -0.75 -9.76 4.41 -57.58 -0.25 -10.01 16 13 C 0.70 12.49 8.56 -86.91 -0.74 11.74 16 14 O -0.60 -13.16 16.01 5.29 0.08 -13.07 16 15 N -0.74 -13.45 5.56 -65.23 -0.36 -13.81 16 16 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.64 7.41 -51.93 -0.38 0.26 16 34 H 0.06 0.49 7.11 -51.92 -0.37 0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.49 7.76 -51.93 -0.40 0.09 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.39 4.21 5.88 -40.82 -0.24 3.97 16 42 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -31.82 371.17 -10.33 -42.15 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.83 Total: 3.47 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.28 Total: -5.29 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.12 Total: -49.40 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.82 -10.33 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343758957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.805 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds