Wall clock time and date at job start Tue Mar 31 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47543 * 2 1 4 4 C 1.52999 * 109.47209 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47057 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.05394 * 306.41279 * 5 4 3 7 7 C 1.54270 * 110.03275 * 67.83041 * 5 4 3 8 8 C 1.54887 * 104.19434 * 142.89164 * 7 5 4 9 9 C 1.54886 * 102.75418 * 322.06024 * 8 7 5 10 10 C 1.53875 * 110.03055 * 184.99702 * 5 4 3 11 11 H 1.08999 * 110.03389 * 0.04781 * 10 5 4 12 12 N 1.46499 * 110.03038 * 121.43449 * 10 5 4 13 13 C 1.34784 * 119.99893 * 204.99938 * 12 10 5 14 14 O 1.21588 * 119.99858 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99964 * 179.97438 * 13 12 10 16 16 C 1.46496 * 119.99610 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46847 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46819 * 300.00563 * 1 2 3 28 28 H 1.08998 * 109.47036 * 59.99873 * 1 2 3 29 29 H 1.09006 * 109.46819 * 239.99436 * 2 1 3 30 30 H 1.08998 * 109.47036 * 120.00127 * 2 1 3 31 31 H 1.08992 * 109.47394 * 59.99928 * 3 2 1 32 32 H 1.09010 * 109.46712 * 300.00046 * 3 2 1 33 33 H 1.09000 * 109.47679 * 59.99512 * 4 3 2 34 34 H 1.09001 * 109.47068 * 299.99331 * 4 3 2 35 35 H 1.08996 * 110.48751 * 261.57582 * 7 5 4 36 36 H 1.08999 * 110.48344 * 24.08139 * 7 5 4 37 37 H 1.09005 * 110.75165 * 80.37518 * 8 7 5 38 38 H 1.09002 * 110.75372 * 203.55516 * 8 7 5 39 39 H 1.09000 * 110.48322 * 279.26516 * 9 8 7 40 40 H 1.08999 * 110.48762 * 156.61917 * 9 8 7 41 41 H 0.97000 * 120.00768 * 24.99695 * 12 10 5 42 42 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 43 43 H 1.09000 * 109.47627 * 59.99917 * 16 15 13 44 44 H 1.09002 * 109.46983 * 299.99313 * 16 15 13 45 45 H 1.09001 * 109.47671 * 59.99931 * 17 16 15 46 46 H 1.09006 * 109.47297 * 299.99651 * 17 16 15 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 1 3.6314 3.4396 -0.8253 7 6 3.7412 3.5658 1.3409 8 6 4.9698 4.4628 1.6325 9 6 6.1530 3.5922 1.1418 10 6 5.6135 2.9016 -0.1279 11 1 5.9943 1.8821 -0.1897 12 7 6.0106 3.6583 -1.3178 13 6 7.1932 3.4061 -1.9133 14 8 7.9306 2.5509 -1.4625 15 7 7.5582 4.1018 -3.0083 16 6 8.8433 3.8273 -3.6558 17 6 9.0111 4.7472 -4.8668 18 6 10.3334 4.4653 -5.5325 19 1 10.9888 3.7062 -5.1317 20 6 10.7064 5.1764 -6.6533 21 7 9.9085 6.1011 -7.1411 22 14 12.3457 4.8273 -7.4780 23 1 12.5079 5.7193 -8.6542 24 1 13.4476 5.0739 -6.5135 25 1 12.3846 3.4109 -7.9225 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8932 -0.5140 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9331 0.9286 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 2.8405 4.1719 1.2444 36 1 3.6158 2.8201 2.1259 37 1 4.9127 5.3921 1.0656 38 1 5.0537 4.6678 2.6998 39 1 6.4194 2.8510 1.8952 40 1 7.0123 4.2177 0.9000 41 1 5.4225 4.3408 -1.6773 42 1 6.9697 4.7838 -3.3681 43 1 8.8707 2.7879 -3.9829 44 1 9.6525 4.0069 -2.9479 45 1 8.9836 5.7867 -4.5401 46 1 8.2018 4.5673 -5.5746 47 1 9.0574 6.2825 -6.7126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343758958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:16 Heat of formation + Delta-G solvation = -84.783121 kcal Electronic energy + Delta-G solvation = -22056.586456 eV Core-core repulsion = 18851.075869 eV Total energy + Delta-G solvation = -3205.510587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10727 -38.48936 -35.75461 -34.92273 -33.45706 -32.89717 -31.56134 -29.43336 -27.63667 -27.27660 -24.27443 -23.26336 -21.63806 -21.48500 -21.00283 -20.08381 -19.97760 -17.93432 -16.57673 -16.55560 -15.86058 -15.52931 -14.99703 -14.87121 -14.17822 -14.04468 -13.99548 -13.73111 -13.61980 -13.38479 -13.13903 -12.54657 -12.33948 -12.16638 -11.93732 -11.66095 -11.57938 -11.39390 -11.24441 -11.06695 -10.95497 -10.91588 -10.82976 -10.73679 -10.59452 -10.40522 -10.16652 -9.95091 -9.80098 -8.96595 -8.68096 -8.43297 -8.28088 -6.42595 -4.12107 3.05409 3.44433 3.46024 3.57578 3.64617 4.22780 4.40408 4.43030 4.52151 4.66642 4.72261 4.73317 4.83183 5.04902 5.17200 5.21997 5.25387 5.35454 5.35680 5.42493 5.46907 5.49250 5.54913 5.57857 5.69009 5.73876 5.77072 5.82449 5.85336 5.98422 6.03982 6.07430 6.14669 6.16381 6.21374 6.29599 6.65203 6.75135 6.92231 7.16482 7.38581 7.39929 8.10341 8.39724 8.40603 8.81595 8.98926 9.59687 10.98530 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002613 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.250267 B =10711.232686 C =11310.195677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.098 4.098 6 H 0.078 0.922 7 C -0.117 4.117 8 C -0.125 4.125 9 C -0.135 4.135 10 C 0.164 3.836 11 H 0.090 0.910 12 N -0.746 5.746 13 C 0.698 3.302 14 O -0.597 6.597 15 N -0.742 5.742 16 C 0.148 3.852 17 C 0.000 4.000 18 C -0.601 4.601 19 H 0.053 0.947 20 C 0.016 3.984 21 N -0.911 5.911 22 Si 1.071 2.929 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.013 0.987 46 H 0.013 0.987 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.877 -6.176 17.491 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.150 4.150 5 C -0.117 4.117 6 H 0.096 0.904 7 C -0.155 4.155 8 C -0.163 4.163 9 C -0.174 4.174 10 C 0.058 3.942 11 H 0.108 0.892 12 N -0.402 5.402 13 C 0.398 3.602 14 O -0.476 6.476 15 N -0.396 5.396 16 C 0.025 3.975 17 C -0.037 4.037 18 C -0.640 4.640 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.547 5.547 22 Si 0.899 3.101 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.224 0.776 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.177 -6.539 16.615 24.777 hybrid contribution -1.563 0.232 0.932 1.835 sum -18.741 -6.307 17.547 26.437 Atomic orbital electron populations 1.21776 0.96025 1.01499 1.01716 1.21547 0.95725 0.97097 1.02068 1.21627 0.95286 0.96648 1.02043 1.21701 0.95347 0.95482 1.02462 1.22096 0.94266 0.96856 0.98475 0.90393 1.22446 0.97939 0.98578 0.96521 1.22513 0.94742 0.98249 1.00795 1.22798 0.98157 0.99252 0.97170 1.21432 0.92906 0.96189 0.83698 0.89208 1.45317 1.20323 1.43010 1.31507 1.16091 0.81638 0.81966 0.80510 1.90884 1.53388 1.36328 1.66994 1.45544 1.23340 1.41262 1.29406 1.21403 0.81431 1.00038 0.94622 1.19453 0.98127 0.94317 0.91851 1.21891 1.03579 1.23866 1.14621 0.92853 1.25891 1.04305 0.93481 0.95078 1.70805 1.11326 1.30820 1.41725 0.83504 0.74330 0.76038 0.76207 1.20754 1.21309 1.21314 0.92897 0.92861 0.92789 0.92022 0.92095 0.91905 0.92098 0.91698 0.91625 0.91672 0.91280 0.91629 0.91660 0.91032 0.91096 0.77484 0.77606 0.92678 0.92671 0.96915 0.96912 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.15 0.37 -0.57 16 2 C -0.13 -0.86 5.93 -26.74 -0.16 -1.02 16 3 C -0.12 -0.82 5.07 -26.73 -0.14 -0.95 16 4 C -0.11 -0.90 4.34 -26.73 -0.12 -1.02 16 5 C -0.10 -0.82 2.70 -89.50 -0.24 -1.06 16 6 H 0.08 0.64 7.62 -51.93 -0.40 0.24 16 7 C -0.12 -0.85 5.54 -25.07 -0.14 -0.99 16 8 C -0.13 -1.05 6.91 -24.74 -0.17 -1.22 16 9 C -0.13 -1.46 6.54 -25.07 -0.16 -1.63 16 10 C 0.16 1.87 2.90 -66.81 -0.19 1.68 16 11 H 0.09 1.23 7.09 -51.93 -0.37 0.86 16 12 N -0.75 -9.64 5.03 -57.58 -0.29 -9.93 16 13 C 0.70 12.47 8.56 -86.91 -0.74 11.73 16 14 O -0.60 -13.10 16.00 5.29 0.08 -13.02 16 15 N -0.74 -13.43 5.56 -65.23 -0.36 -13.79 16 16 C 0.15 3.29 5.61 -4.04 -0.02 3.26 16 17 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 18 C -0.60 -17.15 9.11 -34.44 -0.31 -17.46 16 19 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 21 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 22 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 7.76 -51.93 -0.40 0.07 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 41 H 0.39 4.03 8.33 -40.82 -0.34 3.69 16 42 H 0.39 6.04 8.49 -40.82 -0.35 5.69 16 43 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 46 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 47 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.76 374.12 -10.41 -43.17 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -8.90 Total: 3.53 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.25 Total: -8.99 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.10 Total: -50.54 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.76 -10.41 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343758958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.614 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds