Wall clock time and date at job start Tue Mar 31 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47199 * 2 1 4 4 C 1.53001 * 109.46999 * 239.99531 * 2 1 3 5 5 C 1.52996 * 109.46770 * 119.99800 * 2 1 3 6 6 H 1.08994 * 110.88967 * 294.80967 * 5 2 1 7 7 C 1.55162 * 111.00174 * 170.88540 * 5 2 1 8 8 C 1.54319 * 102.86435 * 206.22897 * 7 5 2 9 9 N 1.47027 * 107.27305 * 22.52786 * 8 7 5 10 10 C 1.34778 * 125.64408 * 180.96936 * 9 8 7 11 11 O 1.21589 * 119.99461 * 179.68993 * 10 9 8 12 12 N 1.34775 * 120.00218 * 359.69055 * 10 9 8 13 13 C 1.46500 * 119.99827 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46748 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46792 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47158 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99617 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99630 * 359.71480 * 18 16 15 20 20 Si 1.86800 * 120.00228 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47184 * 179.72003 * 20 18 16 22 22 H 1.48502 * 109.46941 * 299.71649 * 20 18 16 23 23 H 1.48501 * 109.47265 * 59.72073 * 20 18 16 24 24 C 1.47422 * 108.70672 * 0.70182 * 9 8 7 25 25 H 1.09002 * 109.47317 * 299.99995 * 1 2 3 26 26 H 1.08999 * 109.47558 * 59.99927 * 1 2 3 27 27 H 1.08996 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47711 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47279 * 300.00300 * 3 2 1 30 30 H 1.09000 * 109.47490 * 59.99679 * 3 2 1 31 31 H 1.08998 * 109.47288 * 293.52977 * 4 2 1 32 32 H 1.09003 * 109.46658 * 53.53209 * 4 2 1 33 33 H 1.09000 * 109.46973 * 173.52285 * 4 2 1 34 34 H 1.08999 * 110.71797 * 324.78851 * 7 5 2 35 35 H 1.08993 * 110.71778 * 87.88403 * 7 5 2 36 36 H 1.08998 * 109.98846 * 263.04902 * 8 7 5 37 37 H 1.08998 * 109.77234 * 141.88548 * 8 7 5 38 38 H 0.97001 * 119.99728 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47161 * 60.00140 * 13 12 10 40 40 H 1.08989 * 109.47392 * 299.99672 * 13 12 10 41 41 H 1.09004 * 109.46878 * 60.00330 * 14 13 12 42 42 H 1.09001 * 109.47518 * 299.99932 * 14 13 12 43 43 H 1.08996 * 109.47382 * 60.00155 * 15 14 13 44 44 H 1.09001 * 109.47552 * 299.99743 * 15 14 13 45 45 H 0.96997 * 119.99976 * 0.28482 * 19 18 16 46 46 H 1.09003 * 110.36806 * 94.93642 * 24 9 8 47 47 H 1.09000 * 110.36867 * 217.15434 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 1.7666 -0.1751 2.1521 7 6 3.5737 -0.9437 1.1758 8 6 3.7837 -2.1863 2.0666 9 7 2.5017 -2.9038 2.1241 10 6 2.2650 -4.0345 2.8185 11 8 1.1595 -4.5402 2.7978 12 7 3.2536 -4.6044 3.5356 13 6 2.9963 -5.8337 4.2898 14 6 4.2750 -6.2675 5.0093 15 6 4.0065 -7.5517 5.7965 16 6 5.2658 -7.9788 6.5058 17 1 6.1675 -7.3930 6.4048 18 6 5.2670 -9.1178 7.2828 19 7 4.1678 -9.8285 7.4094 20 14 6.8282 -9.6474 8.1613 21 1 6.5659 -10.8904 8.9304 22 1 7.8971 -9.8999 7.1619 23 1 7.2624 -8.5730 9.0900 24 6 1.5164 -2.1783 1.3019 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.7743 -1.7770 -1.1931 32 1 1.5852 -0.2787 -2.1354 33 1 3.1238 -0.6221 -1.3091 34 1 3.8859 -1.1425 0.1505 35 1 4.1079 -0.0841 1.5803 36 1 4.0824 -1.8798 3.0691 37 1 4.5486 -2.8282 1.6296 38 1 4.1356 -4.2011 3.5517 39 1 2.6803 -6.6208 3.6050 40 1 2.2103 -5.6526 5.0227 41 1 4.5914 -5.4806 5.6941 42 1 5.0609 -6.4489 4.2761 43 1 3.6903 -8.3384 5.1116 44 1 3.2206 -7.3709 6.5298 45 1 3.3572 -9.5537 6.9529 46 1 1.4737 -2.6024 0.2986 47 1 0.5326 -2.2130 1.7699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343837291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:05 Heat of formation + Delta-G solvation = -62.465726 kcal Electronic energy + Delta-G solvation = -22358.805905 eV Core-core repulsion = 19154.263073 eV Total energy + Delta-G solvation = -3204.542832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56741 -38.88960 -35.99361 -35.37978 -33.53733 -31.46420 -30.55235 -29.09168 -27.74008 -27.42811 -26.25771 -23.83269 -22.56863 -22.13499 -20.82185 -19.73298 -18.79257 -17.92076 -16.87293 -16.64611 -15.70825 -15.26593 -14.97901 -14.56805 -14.46804 -14.11577 -13.99447 -13.72394 -13.50127 -13.17460 -13.05588 -12.82362 -12.52995 -12.47703 -12.02580 -12.00381 -11.81990 -11.61440 -11.59576 -11.41817 -10.85336 -10.81641 -10.78486 -10.76723 -10.68727 -10.21596 -10.09099 -9.98665 -9.76526 -8.94339 -8.56230 -8.46778 -8.32257 -6.35464 -4.05070 2.66246 3.32929 3.43889 3.46061 3.64954 3.97217 4.17673 4.26119 4.31188 4.55478 4.60347 4.71350 4.79828 4.98660 5.03797 5.19040 5.25677 5.30863 5.34757 5.37391 5.41685 5.46079 5.50898 5.58053 5.61111 5.66766 5.70376 5.72171 5.74357 5.76572 5.85928 5.98548 6.09113 6.10763 6.16739 6.46305 6.51925 6.77075 6.90190 7.11289 7.38208 7.50818 8.07865 8.20090 8.46064 8.72897 8.88608 9.67470 11.05305 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044501 B = 0.002464 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.049943 B =11360.929198 C =11761.030100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.092 4.092 6 H 0.085 0.915 7 C -0.129 4.129 8 C 0.099 3.901 9 N -0.641 5.641 10 C 0.718 3.282 11 O -0.592 6.592 12 N -0.739 5.739 13 C 0.134 3.866 14 C -0.113 4.113 15 C 0.011 3.989 16 C -0.603 4.603 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.128 3.872 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.270 0.730 46 H 0.068 0.932 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 24.213 -17.119 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.207 4.207 5 C -0.111 4.111 6 H 0.103 0.897 7 C -0.167 4.167 8 C -0.025 4.025 9 N -0.381 5.381 10 C 0.420 3.580 11 O -0.470 6.470 12 N -0.394 5.394 13 C 0.011 3.989 14 C -0.151 4.151 15 C -0.027 4.027 16 C -0.642 4.642 17 H 0.067 0.933 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.898 3.102 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 C 0.005 3.995 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.549 22.554 -16.057 27.803 hybrid contribution -0.119 1.416 -0.979 1.725 sum -2.668 23.969 -17.036 29.527 Atomic orbital electron populations 1.21927 0.94240 1.02275 1.01850 1.20416 0.95769 0.95343 0.94217 1.21865 1.01088 0.95009 1.01800 1.22069 1.01156 1.00734 0.96720 1.22432 0.95025 0.95100 0.98526 0.89705 1.22801 0.96208 0.97001 1.00703 1.21985 0.86594 0.93736 1.00176 1.47568 1.12646 1.25872 1.51964 1.15525 0.84630 0.79353 0.78513 1.90916 1.22872 1.64550 1.68649 1.45355 1.12712 1.29226 1.52079 1.21508 0.99391 0.83789 0.94191 1.21747 0.94583 1.00176 0.98568 1.19154 0.97702 0.91273 0.94547 1.22014 0.96858 1.12460 1.32820 0.93328 1.25873 1.03297 0.93609 0.96259 1.70773 1.01573 1.40174 1.42277 0.83532 0.74196 0.76291 0.76166 1.20753 1.21470 1.21468 1.22180 0.92694 0.89783 0.94820 0.92514 0.92537 0.92217 0.92473 0.92585 0.92615 0.92042 0.92565 0.92163 0.89768 0.90092 0.91685 0.91654 0.77290 0.92022 0.92017 0.92621 0.92621 0.97140 0.97140 0.92000 0.91425 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.23 37.16 0.31 -0.60 16 2 C -0.06 -0.34 0.60 -154.51 -0.09 -0.43 16 3 C -0.14 -0.72 8.35 37.15 0.31 -0.41 16 4 C -0.15 -0.88 7.69 37.16 0.29 -0.59 16 5 C -0.09 -0.67 2.39 -88.47 -0.21 -0.88 16 6 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.13 -0.84 5.57 -24.90 -0.14 -0.98 16 8 C 0.10 0.87 6.14 -3.06 -0.02 0.85 16 9 N -0.64 -8.08 3.33 -176.23 -0.59 -8.67 16 10 C 0.72 12.11 8.49 -86.92 -0.74 11.37 16 11 O -0.59 -12.43 16.60 5.29 0.09 -12.34 16 12 N -0.74 -11.74 5.52 -65.23 -0.36 -12.10 16 13 C 0.13 2.51 5.67 -4.04 -0.02 2.49 16 14 C -0.11 -2.29 5.27 -26.73 -0.14 -2.43 16 15 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 16 C -0.60 -17.29 9.11 -34.44 -0.31 -17.61 16 17 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 18 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 19 N -0.91 -28.38 13.65 55.43 0.76 -27.62 16 20 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.13 1.35 5.12 -2.53 -0.01 1.34 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.42 7.19 -51.93 -0.37 0.04 16 28 H 0.06 0.27 7.61 -51.93 -0.40 -0.12 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.42 5.98 -51.93 -0.31 0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 6.34 -51.93 -0.33 -0.01 16 34 H 0.08 0.50 5.62 -51.93 -0.29 0.21 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.39 5.19 7.46 -40.82 -0.30 4.88 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.22 8.14 -51.94 -0.42 0.80 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 45 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 46 H 0.07 0.70 5.87 -51.93 -0.30 0.39 16 47 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.03 363.54 -9.26 -43.29 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.55 Total: -0.94 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.01 Total: -7.43 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.19 Total: -48.39 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.03 -9.26 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343837291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.179 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds