Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47497 * 2 1 4 4 C 1.52996 * 109.47278 * 239.99730 * 2 1 3 5 5 C 1.53000 * 109.47044 * 120.00207 * 2 1 3 6 6 H 1.09005 * 110.88910 * 294.76747 * 5 2 1 7 7 C 1.55158 * 111.00688 * 58.65117 * 5 2 1 8 8 C 1.54319 * 102.94420 * 153.61511 * 7 5 2 9 9 N 1.47017 * 107.27270 * 337.80884 * 8 7 5 10 10 C 1.34784 * 125.65194 * 178.90335 * 9 8 7 11 11 O 1.21582 * 120.00240 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99533 * 0.02602 * 10 9 8 13 13 C 1.46500 * 119.99932 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47354 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46847 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46831 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00044 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00113 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00031 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47240 * 60.00600 * 20 18 16 22 22 H 1.48507 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47625 * 300.00194 * 20 18 16 24 24 C 1.47423 * 108.70375 * 359.16640 * 9 8 7 25 25 H 1.09006 * 109.47085 * 300.00137 * 1 2 3 26 26 H 1.09006 * 109.47324 * 59.99645 * 1 2 3 27 27 H 1.09004 * 109.47745 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47316 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47136 * 300.00276 * 3 2 1 30 30 H 1.08999 * 109.46560 * 60.00271 * 3 2 1 31 31 H 1.08999 * 109.47264 * 293.51606 * 4 2 1 32 32 H 1.09007 * 109.46840 * 53.51438 * 4 2 1 33 33 H 1.08999 * 109.47510 * 173.51433 * 4 2 1 34 34 H 1.09001 * 110.71939 * 35.24885 * 7 5 2 35 35 H 1.09001 * 110.72287 * 271.98043 * 7 5 2 36 36 H 1.09001 * 109.88350 * 218.39093 * 8 7 5 37 37 H 1.09002 * 110.00981 * 97.30140 * 8 7 5 38 38 H 0.96998 * 120.00437 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47090 * 59.99679 * 13 12 10 40 40 H 1.09002 * 109.46926 * 299.99982 * 13 12 10 41 41 H 1.09002 * 109.47178 * 299.99936 * 14 13 12 42 42 H 1.08993 * 109.46805 * 60.00270 * 14 13 12 43 43 H 1.08993 * 109.47077 * 299.99703 * 15 14 13 44 44 H 1.08993 * 109.47291 * 60.00453 * 15 14 13 45 45 H 0.97000 * 120.00132 * 180.02562 * 19 18 16 46 46 H 1.09002 * 110.36805 * 142.73703 * 24 9 8 47 47 H 1.08994 * 110.37126 * 265.06537 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 1.7672 -0.1748 2.1521 7 6 1.5148 -2.1804 1.3023 8 6 2.5921 -2.9053 2.1362 9 7 3.8245 -2.1089 2.0442 10 6 4.9924 -2.3956 2.6529 11 8 5.9508 -1.6621 2.5057 12 7 5.0977 -3.4954 3.4248 13 6 6.3672 -3.8073 4.0860 14 6 6.2175 -5.0974 4.8948 15 6 7.5433 -5.4228 5.5859 16 6 7.3960 -6.6939 6.3820 17 1 6.4514 -7.2175 6.3936 18 6 8.4673 -7.1889 7.0948 19 7 9.6177 -6.5517 7.0803 20 14 8.2845 -8.7640 8.0822 21 1 7.9131 -9.8780 7.1730 22 1 9.5716 -9.0807 8.7519 23 1 7.2238 -8.5862 9.1062 24 6 3.5696 -0.9414 1.1809 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.7745 -1.7770 -1.1930 32 1 1.5849 -0.2788 -2.1354 33 1 3.1237 -0.6219 -1.3091 34 1 1.4526 -2.6045 0.3002 35 1 0.5468 -2.2240 1.8014 36 1 2.7644 -3.9029 1.7323 37 1 2.2735 -2.9765 3.1762 38 1 4.3330 -4.0803 3.5426 39 1 6.6397 -2.9899 4.7536 40 1 7.1459 -3.9375 3.3345 41 1 5.4389 -4.9668 5.6464 42 1 5.9450 -5.9150 4.2275 43 1 8.3221 -5.5533 4.8347 44 1 7.8154 -4.6052 6.2532 45 1 10.3715 -6.9002 7.5815 46 1 4.0965 -0.0662 1.5611 47 1 3.8745 -1.1534 0.1562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343837293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = -78.973337 kcal Electronic energy + Delta-G solvation = -22325.280158 eV Core-core repulsion = 19120.021502 eV Total energy + Delta-G solvation = -3205.258656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51687 -39.82818 -37.05776 -36.59984 -35.18516 -33.11771 -31.60466 -29.93300 -28.36020 -28.17621 -27.91045 -25.35880 -23.96819 -22.76702 -22.27568 -20.85661 -19.44607 -18.92416 -18.46119 -17.57644 -16.99719 -16.54031 -16.37167 -15.72993 -15.62972 -15.18250 -14.90869 -14.78535 -14.35477 -14.22450 -14.04448 -13.86179 -13.68148 -13.45399 -13.01413 -12.93282 -12.71227 -12.60051 -12.53180 -12.44940 -12.40054 -12.15680 -11.96872 -11.68283 -11.65908 -11.39512 -11.32855 -11.26622 -11.19632 -11.13605 -10.54630 -10.26488 -9.48711 -8.18925 -6.30799 1.41791 1.45306 1.52833 1.57243 2.06773 2.42300 3.01308 3.14563 3.53924 3.59966 3.77341 4.10051 4.13229 4.18730 4.20417 4.27619 4.39442 4.42269 4.53866 4.61283 4.70316 4.78474 4.83465 4.90414 4.92450 4.93654 4.95027 5.04376 5.07242 5.14685 5.15369 5.16753 5.22185 5.25276 5.33072 5.44125 5.45971 5.52920 5.56327 5.61492 5.70118 5.83849 6.03274 6.22282 6.85809 6.94927 7.38652 7.50127 8.93105 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044635 B = 0.002456 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.153427 B =11398.539153 C =11796.690655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.150 4.150 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.117 4.117 8 C 0.089 3.911 9 N -0.638 5.638 10 C 0.710 3.290 11 O -0.643 6.643 12 N -0.728 5.728 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.265 1.265 24 C 0.120 3.880 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.410 0.590 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.068 0.932 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.051 0.949 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.482 11.262 -16.097 31.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 C -0.203 4.203 4 C -0.207 4.207 5 C -0.101 4.101 6 H 0.101 0.899 7 C -0.155 4.155 8 C -0.033 4.033 9 N -0.375 5.375 10 C 0.412 3.588 11 O -0.525 6.525 12 N -0.383 5.383 13 C 0.025 3.975 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.002 4.002 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.545 11.749 -16.093 30.845 hybrid contribution 0.612 -0.765 0.770 1.246 sum -22.933 10.984 -15.323 29.688 Atomic orbital electron populations 1.21851 0.92829 1.02666 1.02140 1.20390 0.96616 0.94839 0.93435 1.21928 1.00590 0.95558 1.02248 1.22061 1.00641 1.00925 0.97045 1.22344 0.91738 0.96767 0.99247 0.89910 1.22793 0.97931 0.93433 1.01295 1.22318 0.83705 0.95558 1.01741 1.47635 1.09940 1.28582 1.51370 1.15727 0.82411 0.81679 0.78994 1.90874 1.39111 1.53149 1.69348 1.45035 1.15518 1.26263 1.51531 1.21102 0.84348 0.97268 0.94801 1.21580 0.99185 0.94671 0.98218 1.18936 0.92690 0.95415 0.94330 1.21642 0.97782 1.09264 1.29230 0.91444 1.26051 0.94910 1.01232 0.98037 1.70113 1.02768 1.41489 1.43209 0.85443 0.77419 0.79054 0.78765 1.18966 1.21201 1.18961 1.22337 0.97114 0.86972 0.93798 0.92471 0.92106 0.91467 0.93659 0.91731 0.92501 0.91556 0.91751 0.93393 0.88900 0.87680 0.90579 0.90713 0.75406 0.93599 0.93564 0.91346 0.91326 0.98965 0.98967 0.92805 0.93010 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.23 71.98 0.59 -0.40 16 2 C -0.05 -0.53 0.61 -52.18 -0.03 -0.57 16 3 C -0.15 -1.68 8.35 71.98 0.60 -1.08 16 4 C -0.15 -1.56 7.69 71.98 0.55 -1.00 16 5 C -0.08 -1.06 2.38 -9.48 -0.02 -1.08 16 6 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 7 C -0.12 -1.14 5.12 31.78 0.16 -0.98 16 8 C 0.09 1.35 6.15 86.73 0.53 1.88 16 9 N -0.64 -15.68 3.33 -830.21 -2.76 -18.44 16 10 C 0.71 24.22 8.49 179.05 1.52 25.74 16 11 O -0.64 -28.22 16.60 -3.97 -0.07 -28.29 16 12 N -0.73 -22.73 5.52 -478.53 -2.64 -25.37 16 13 C 0.15 5.69 5.67 86.38 0.49 6.18 16 14 C -0.10 -3.93 5.27 30.60 0.16 -3.76 16 15 C 0.02 1.28 4.97 29.85 0.15 1.42 16 16 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -57.81 13.29 21.44 0.28 -57.52 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.12 2.54 5.54 86.78 0.48 3.02 16 25 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.07 0.38 7.23 -2.39 -0.02 0.37 16 28 H 0.04 0.64 7.58 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.61 5.99 -2.39 -0.01 0.60 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.05 0.63 6.36 -2.39 -0.02 0.61 16 34 H 0.09 0.76 5.90 -2.39 -0.01 0.74 16 35 H 0.10 0.62 8.11 -2.39 -0.02 0.60 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.41 9.97 7.46 -92.71 -0.69 9.27 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.05 1.32 8.00 -2.39 -0.02 1.31 16 47 H 0.07 1.48 5.61 -2.39 -0.01 1.47 16 Total: -1.00 -73.69 364.91 2.96 -70.73 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.23 Total: 13.56 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.88 Total: -0.72 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -5.12 Total: -101.33 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.07 Total: -28.29 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.69 2.96 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343837293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.247 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds