Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46829 * 2 1 4 4 C 1.53004 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47475 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46859 * 305.00179 * 5 4 3 7 7 N 1.46500 * 109.47391 * 64.99845 * 5 4 3 8 8 C 1.34773 * 120.00431 * 205.00423 * 7 5 4 9 9 O 1.21593 * 119.99894 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00097 * 179.72742 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27545 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46843 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99981 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99570 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46867 * 90.00067 * 17 15 13 19 19 H 1.48501 * 109.47216 * 209.99924 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00265 * 17 15 13 21 21 C 1.52996 * 109.47309 * 185.00095 * 5 4 3 22 22 C 1.53776 * 113.61501 * 279.13509 * 21 5 4 23 23 C 1.53955 * 87.02124 * 220.04542 * 22 21 5 24 24 C 1.53779 * 113.61468 * 181.52764 * 21 5 4 25 25 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47243 * 300.00428 * 1 2 3 27 27 H 1.09001 * 109.46661 * 60.00431 * 1 2 3 28 28 H 1.09000 * 109.47254 * 240.00061 * 2 1 3 29 29 H 1.08992 * 109.47024 * 120.00085 * 2 1 3 30 30 H 1.08996 * 109.47557 * 59.99764 * 3 2 1 31 31 H 1.09001 * 109.47542 * 299.99638 * 3 2 1 32 32 H 1.09000 * 109.46933 * 60.00065 * 4 3 2 33 33 H 1.08992 * 109.47030 * 300.00282 * 4 3 2 34 34 H 0.97000 * 119.99456 * 24.99985 * 7 5 4 35 35 H 0.97000 * 119.99736 * 0.26819 * 10 8 7 36 36 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 37 37 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 38 38 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 39 39 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 40 40 H 0.96996 * 120.00389 * 180.02562 * 16 15 13 41 41 H 1.09001 * 112.85138 * 50.33272 * 21 5 4 42 42 H 1.08995 * 113.61419 * 334.56964 * 22 21 5 43 43 H 1.08999 * 113.61533 * 105.46760 * 22 21 5 44 44 H 1.08995 * 113.53784 * 270.81402 * 23 22 21 45 45 H 1.09000 * 113.74177 * 139.93938 * 23 22 21 46 46 H 1.09001 * 113.61257 * 254.52999 * 24 21 5 47 47 H 1.09002 * 113.61464 * 25.43315 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 7 3.6919 3.5397 1.2531 8 6 3.5650 4.8806 1.3012 9 8 3.7731 5.5470 0.3057 10 7 3.2026 5.4823 2.4514 11 6 3.0588 6.9394 2.5021 12 6 2.6420 7.3620 3.9123 13 6 2.4935 8.8607 3.9643 14 1 2.6783 9.4527 3.0800 15 6 2.1216 9.4762 5.1407 16 7 1.8961 8.7553 6.2173 17 14 1.9382 11.3341 5.2053 18 1 0.5427 11.7059 4.8597 19 1 2.2541 11.8154 6.5742 20 1 2.8718 11.9578 4.2334 21 6 5.6048 2.8869 -0.1238 22 6 6.3323 2.6233 1.2051 23 6 7.3452 3.6984 0.7714 24 6 6.2235 4.2945 -0.0954 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9329 0.9289 0.8908 34 1 3.5262 3.0080 2.0473 35 1 3.0369 4.9507 3.2457 36 1 4.0099 7.4074 2.2484 37 1 2.2972 7.2544 1.7888 38 1 1.6907 6.8939 4.1656 39 1 3.4033 7.0469 4.6259 40 1 1.6341 9.1883 7.0448 41 1 5.9628 2.2693 -0.9475 42 1 5.7503 2.9008 2.0839 43 1 6.7599 1.6233 1.2779 44 1 8.1799 3.3021 0.1933 45 1 7.6648 4.3529 1.5823 46 1 6.5634 4.6418 -1.0711 47 1 5.6118 5.0299 0.4272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343988737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -43.540906 kcal Electronic energy + Delta-G solvation = -22732.280247 eV Core-core repulsion = 19528.558056 eV Total energy + Delta-G solvation = -3203.722190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43737 -38.21522 -36.29780 -34.79008 -33.93886 -32.80310 -31.05711 -29.25197 -27.40204 -25.50288 -24.66629 -23.90363 -21.63421 -21.23372 -20.78715 -20.52950 -19.02383 -17.98041 -16.43259 -16.10352 -16.04709 -15.44998 -14.99835 -14.51553 -14.47782 -14.10418 -13.85906 -13.73537 -13.24021 -13.17806 -12.86184 -12.53366 -12.30581 -12.18371 -12.04123 -11.57482 -11.35712 -11.29186 -11.16942 -11.02850 -10.96132 -10.73841 -10.62234 -10.52576 -10.32065 -10.10019 -9.96474 -9.81495 -9.52543 -9.23888 -8.76041 -8.46215 -8.20213 -6.07846 -4.10339 3.12711 3.30672 3.36840 3.41616 3.62970 4.37301 4.41255 4.66665 4.72425 4.76057 4.80022 4.86652 4.92776 5.02534 5.13402 5.24539 5.29333 5.31454 5.51332 5.59737 5.61814 5.67884 5.73259 5.77638 5.81552 5.89320 5.96755 6.00467 6.00880 6.11089 6.19344 6.22893 6.33329 6.39923 6.42369 6.72194 6.77766 6.82767 7.06048 7.30958 7.59496 7.65364 7.91582 8.28227 8.49191 8.94992 9.05795 9.54395 11.03813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.003537 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.277183 B = 7914.978958 C = 9163.978972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.087 0.913 7 N -0.743 5.743 8 C 0.699 3.301 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.141 3.859 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.147 4.147 24 C -0.144 4.144 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -19.345 -10.746 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.161 4.161 5 C 0.068 3.932 6 H 0.105 0.895 7 N -0.399 5.399 8 C 0.399 3.601 9 O -0.471 6.471 10 N -0.393 5.393 11 C 0.018 3.982 12 C -0.024 4.024 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.144 4.144 22 C -0.168 4.168 23 C -0.185 4.185 24 C -0.181 4.181 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.201 -18.667 -11.483 22.315 hybrid contribution -0.226 0.455 0.918 1.049 sum 3.975 -18.213 -10.565 21.427 Atomic orbital electron populations 1.21782 0.95976 1.01367 1.02018 1.21529 0.95856 0.97002 1.01722 1.21632 0.94992 0.96493 1.02727 1.21853 0.95826 0.95693 1.02761 1.20634 0.93405 0.92143 0.87016 0.89479 1.45204 1.75544 1.05595 1.13535 1.16049 0.78098 0.81669 0.84258 1.90858 1.57832 1.63829 1.34583 1.45565 1.73067 1.09837 1.10874 1.21561 1.00273 0.75422 1.00925 1.19317 0.96955 0.96838 0.89315 1.21058 1.46745 0.91571 0.96514 0.92242 1.24992 0.95189 0.98524 0.95588 1.69954 1.46933 1.35489 1.00994 0.86520 0.78535 0.85254 0.77301 1.20569 1.21200 1.19709 1.23000 0.94650 0.98647 0.98114 1.22870 0.97898 0.98299 0.97722 1.22846 0.96895 0.98632 1.00102 1.23321 0.97322 0.97089 1.00320 0.92996 0.92628 0.92785 0.92263 0.92175 0.91620 0.91913 0.90720 0.91489 0.77464 0.77527 0.92868 0.92866 0.96045 0.96034 0.92888 0.89332 0.90004 0.92311 0.91061 0.91915 0.92551 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.03 5.10 -26.73 -0.14 -1.16 16 4 C -0.12 -0.99 4.73 -26.73 -0.13 -1.11 16 5 C 0.17 1.89 2.19 -67.93 -0.15 1.74 16 6 H 0.09 1.15 7.58 -51.92 -0.39 0.76 16 7 N -0.74 -8.91 3.10 -58.68 -0.18 -9.10 16 8 C 0.70 11.63 7.28 -86.92 -0.63 11.00 16 9 O -0.59 -11.97 13.58 5.28 0.07 -11.90 16 10 N -0.74 -12.81 5.56 -65.22 -0.36 -13.18 16 11 C 0.14 3.02 5.61 -4.04 -0.02 2.99 16 12 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 13 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.12 -1.35 3.58 -89.81 -0.32 -1.67 16 22 C -0.13 -1.36 7.47 -25.83 -0.19 -1.55 16 23 C -0.15 -1.73 8.09 -25.83 -0.21 -1.93 16 24 C -0.14 -1.96 7.18 -25.92 -0.19 -2.14 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.39 3.82 8.44 -40.82 -0.34 3.48 16 35 H 0.39 5.89 8.49 -40.82 -0.35 5.55 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.90 6.81 -51.93 -0.35 0.55 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.11 1.90 4.12 -51.93 -0.21 1.69 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -30.73 370.76 -10.27 -41.00 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.78 Total: 5.36 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.32 Total: -8.76 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.19 Total: -47.72 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.73 -10.27 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.542 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds