Wall clock time and date at job start Tue Mar 31 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47271 * 2 1 4 4 C 1.53003 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46830 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47064 * 55.00351 * 5 4 3 7 7 N 1.46502 * 109.47249 * 294.99875 * 5 4 3 8 8 C 1.34769 * 120.00055 * 126.20717 * 7 5 4 9 9 O 1.21591 * 119.99700 * 5.28882 * 8 7 5 10 10 N 1.34775 * 120.00078 * 185.29537 * 8 7 5 11 11 C 1.46505 * 119.99812 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46798 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46850 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99978 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99829 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00044 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00171 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47052 * 89.99849 * 17 15 13 19 19 H 1.48493 * 109.47090 * 210.00547 * 17 15 13 20 20 H 1.48505 * 109.46644 * 329.99921 * 17 15 13 21 21 C 1.53004 * 109.46754 * 174.99913 * 5 4 3 22 22 C 1.53781 * 113.61462 * 179.74006 * 21 5 4 23 23 C 1.53779 * 87.08062 * 220.02008 * 22 21 5 24 24 C 1.53778 * 87.17504 * 25.39253 * 23 22 21 25 25 H 1.08997 * 109.47199 * 299.99999 * 1 2 3 26 26 H 1.08992 * 109.47233 * 60.00108 * 1 2 3 27 27 H 1.09000 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46967 * 239.99299 * 2 1 3 29 29 H 1.09000 * 109.46929 * 119.99977 * 2 1 3 30 30 H 1.09005 * 109.47249 * 59.99924 * 3 2 1 31 31 H 1.09000 * 109.47125 * 299.99857 * 3 2 1 32 32 H 1.08997 * 109.47199 * 60.00001 * 4 3 2 33 33 H 1.09000 * 109.46929 * 299.99977 * 4 3 2 34 34 H 0.97006 * 119.99924 * 306.20594 * 7 5 4 35 35 H 0.96995 * 120.00180 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47227 * 299.99480 * 11 10 8 37 37 H 1.08995 * 109.47257 * 60.00111 * 11 10 8 38 38 H 1.08999 * 109.46996 * 299.99853 * 12 11 10 39 39 H 1.08995 * 109.46937 * 60.00146 * 12 11 10 40 40 H 0.96999 * 119.99710 * 180.02562 * 16 15 13 41 41 H 1.09001 * 112.85008 * 310.93964 * 21 5 4 42 42 H 1.08998 * 113.61532 * 105.46947 * 22 21 5 43 43 H 1.09003 * 113.61285 * 334.57125 * 22 21 5 44 44 H 1.09003 * 113.61041 * 139.98080 * 23 22 21 45 45 H 1.08992 * 113.61683 * 270.79973 * 23 22 21 46 46 H 1.08994 * 113.61879 * 89.15565 * 24 23 22 47 47 H 1.09006 * 113.61439 * 220.06263 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6458 3.4242 0.8406 7 7 3.6919 3.5396 -1.2531 8 6 3.0172 4.7058 -1.2227 9 8 2.8144 5.2633 -0.1614 10 7 2.5670 5.2540 -2.3687 11 6 1.8330 6.5215 -2.3355 12 6 1.4389 6.9199 -3.7592 13 6 0.6844 8.2240 -3.7252 14 1 0.5037 8.7189 -2.7824 15 6 0.2240 8.7849 -4.8976 16 7 -0.4349 9.9227 -4.8678 17 14 0.5360 7.9286 -6.5282 18 1 -0.5854 7.0008 -6.8227 19 1 0.6364 8.9426 -7.6084 20 1 1.8053 7.1618 -6.4496 21 6 5.6049 2.8868 0.1238 22 6 6.2211 4.2958 0.1265 23 6 7.3438 3.7210 -0.7533 24 6 6.3348 2.6548 -1.2118 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.9207 3.1336 -2.1040 35 1 2.7289 4.8094 -3.2154 36 1 0.9350 6.4055 -1.7286 37 1 2.4659 7.2966 -1.9037 38 1 2.3371 7.0360 -4.3658 39 1 0.8062 6.1449 -4.1915 40 1 -0.7591 10.3171 -5.6926 41 1 5.9640 2.2517 0.9337 42 1 6.5604 4.6221 1.1095 43 1 5.6080 5.0414 -0.3798 44 1 7.6612 4.3932 -1.5506 45 1 8.1799 3.3148 -0.1842 46 1 5.7529 2.9510 -2.0845 47 1 6.7659 1.6582 -1.3074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343988738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:09 Heat of formation + Delta-G solvation = -43.935466 kcal Electronic energy + Delta-G solvation = -22727.588229 eV Core-core repulsion = 19523.848929 eV Total energy + Delta-G solvation = -3203.739300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37165 -38.55367 -36.24250 -34.91382 -33.91959 -32.76705 -31.14837 -29.68059 -27.52381 -25.78183 -24.76110 -23.93532 -21.57033 -21.11096 -20.76955 -20.67096 -19.09640 -18.08149 -16.87037 -16.25976 -15.94931 -15.44434 -15.13677 -14.71407 -14.26190 -14.08012 -13.94667 -13.74648 -13.45560 -13.22246 -12.87400 -12.59998 -12.57605 -12.38808 -12.29401 -11.59264 -11.46039 -11.38443 -11.28487 -11.20081 -11.00468 -10.69980 -10.62372 -10.39728 -10.30709 -10.23594 -10.15136 -9.95450 -9.68645 -9.30376 -8.93733 -8.61130 -8.34226 -6.09573 -4.09380 3.05082 3.25909 3.33470 3.34769 3.57497 4.31731 4.38852 4.52870 4.57230 4.63302 4.74268 4.81004 4.82024 4.93162 5.15918 5.22761 5.23447 5.27504 5.47848 5.53624 5.59676 5.64093 5.69698 5.71292 5.77518 5.78293 5.81469 5.89350 5.94930 6.02595 6.10517 6.14779 6.20560 6.27443 6.27727 6.40207 6.60602 6.73982 6.86636 7.09644 7.27070 7.35443 7.69505 8.35339 8.48460 8.94793 8.98807 9.50713 11.03561 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.003921 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.838717 B = 7139.626897 C = 8381.060478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.125 4.125 5 C 0.166 3.834 6 H 0.102 0.898 7 N -0.742 5.742 8 C 0.700 3.300 9 O -0.594 6.594 10 N -0.744 5.744 11 C 0.149 3.851 12 C -0.021 4.021 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.267 1.267 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.391 0.609 35 H 0.390 0.610 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -21.656 7.661 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.163 4.163 5 C 0.060 3.940 6 H 0.120 0.880 7 N -0.398 5.398 8 C 0.400 3.600 9 O -0.472 6.472 10 N -0.397 5.397 11 C 0.027 3.973 12 C -0.059 4.059 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.141 4.141 22 C -0.168 4.168 23 C -0.181 4.181 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.223 0.777 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.744 -20.960 8.539 25.498 hybrid contribution 0.260 -0.711 -1.793 1.946 sum 12.004 -21.671 6.746 25.676 Atomic orbital electron populations 1.21779 0.95970 1.01287 1.02113 1.21520 0.95885 0.97050 1.01526 1.21590 0.94976 0.96335 1.02766 1.21923 0.96016 0.96111 1.02275 1.20711 0.93102 0.92458 0.87723 0.88011 1.45197 1.61596 1.24099 1.08945 1.16050 0.78557 0.80653 0.84765 1.90896 1.63727 1.63261 1.29357 1.45536 1.60318 1.26708 1.07178 1.21343 0.94559 0.81655 0.99792 1.19790 0.96791 0.97613 0.91718 1.20926 1.34975 1.04561 0.95528 0.90603 1.24998 0.94478 0.94716 0.99077 1.69909 1.37608 1.18267 1.27956 0.86751 0.79136 0.79522 0.83645 1.20258 1.21300 1.19133 1.23015 0.94647 0.98192 0.98293 1.22872 0.97280 0.96635 1.00051 1.22787 0.96823 0.98603 0.99851 1.22908 0.97902 0.98823 0.97524 0.92724 0.92646 0.93037 0.92338 0.92339 0.91934 0.91730 0.91831 0.91061 0.77457 0.77735 0.92255 0.92260 0.96105 0.96532 0.92578 0.88754 0.91910 0.89642 0.91741 0.90589 0.90160 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.16 5.10 -26.73 -0.14 -1.30 16 4 C -0.12 -1.04 4.88 -26.73 -0.13 -1.17 16 5 C 0.17 1.72 2.33 -67.93 -0.16 1.56 16 6 H 0.10 1.36 6.96 -51.93 -0.36 1.00 16 7 N -0.74 -8.51 3.25 -58.67 -0.19 -8.70 16 8 C 0.70 11.38 7.98 -86.93 -0.69 10.69 16 9 O -0.59 -12.16 15.70 5.29 0.08 -12.07 16 10 N -0.74 -12.28 5.56 -65.22 -0.36 -12.64 16 11 C 0.15 3.09 5.61 -4.04 -0.02 3.07 16 12 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 13 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 14 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 17 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 21 C -0.12 -1.10 3.58 -89.71 -0.32 -1.42 16 22 C -0.13 -1.42 7.53 -25.92 -0.20 -1.62 16 23 C -0.14 -1.29 8.08 -25.92 -0.21 -1.50 16 24 C -0.13 -1.10 7.47 -25.83 -0.19 -1.29 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 3.59 7.31 -40.82 -0.30 3.29 16 35 H 0.39 5.36 8.49 -40.82 -0.35 5.01 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.18 7.18 -51.93 -0.37 0.81 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.67 6.07 -51.93 -0.32 0.36 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -31.93 371.35 -9.96 -41.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.79 Total: 5.06 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.40 Total: -8.87 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.22 Total: -48.05 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.93 -9.96 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.052 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds