Wall clock time and date at job start Tue Mar 31 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47385 * 2 1 4 4 C 1.53005 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46918 * 306.00230 * 4 3 2 6 6 C 1.53001 * 109.47352 * 66.00347 * 4 3 2 7 7 C 1.53000 * 109.47275 * 186.00564 * 4 3 2 8 8 H 1.09000 * 110.00127 * 179.76676 * 7 4 3 9 9 C 1.54318 * 109.77321 * 300.92402 * 7 4 3 10 10 C 1.55154 * 102.86230 * 141.88310 * 9 7 4 11 11 C 1.54912 * 101.58357 * 324.30458 * 10 9 7 12 12 N 1.47026 * 109.88174 * 58.67136 * 7 4 3 13 13 C 1.34777 * 125.64957 * 61.67909 * 12 7 4 14 14 O 1.21589 * 119.99819 * 354.70523 * 13 12 7 15 15 N 1.34771 * 119.99966 * 174.70997 * 13 12 7 16 16 C 1.46499 * 119.99943 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.47283 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46996 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00241 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99994 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99855 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00328 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47100 * 89.99876 * 22 20 18 24 24 H 1.48500 * 109.46974 * 209.99965 * 22 20 18 25 25 H 1.48495 * 109.46719 * 329.99891 * 22 20 18 26 26 H 1.09000 * 109.47152 * 59.99491 * 1 2 3 27 27 H 1.08998 * 109.47554 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46922 * 300.00175 * 1 2 3 29 29 H 1.09002 * 109.46922 * 239.99825 * 2 1 3 30 30 H 1.09000 * 109.47152 * 120.00509 * 2 1 3 31 31 H 1.08997 * 109.47300 * 60.00491 * 3 2 1 32 32 H 1.09003 * 109.47266 * 299.99609 * 3 2 1 33 33 H 1.09000 * 109.46755 * 300.00296 * 6 4 3 34 34 H 1.08997 * 109.46863 * 60.00129 * 6 4 3 35 35 H 1.08999 * 109.47117 * 180.02562 * 6 4 3 36 36 H 1.08997 * 110.92272 * 23.46940 * 9 7 4 37 37 H 1.08999 * 110.58568 * 260.13955 * 9 7 4 38 38 H 1.09004 * 111.00687 * 206.22560 * 10 9 7 39 39 H 1.09000 * 111.03607 * 82.39264 * 10 9 7 40 40 H 1.09005 * 110.36607 * 278.16841 * 11 10 9 41 41 H 1.09003 * 110.45668 * 155.90095 * 11 10 9 42 42 H 0.97003 * 120.00407 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.47245 * 299.99529 * 16 15 13 44 44 H 1.09005 * 109.47606 * 59.99545 * 16 15 13 45 45 H 1.08999 * 109.46852 * 299.99274 * 17 16 15 46 46 H 1.08996 * 109.46780 * 59.99497 * 17 16 15 47 47 H 0.96994 * 120.00352 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8381 0.8305 6 6 4.0796 0.8559 -1.3188 7 6 4.0802 2.8769 0.1503 8 1 5.1702 2.8864 0.1550 9 6 3.5502 3.7443 -1.0108 10 6 3.2452 5.0990 -0.3185 11 6 2.7386 4.6322 1.0690 12 7 3.5697 3.4603 1.3995 13 6 3.8241 3.0030 2.6415 14 8 4.4506 1.9721 2.7933 15 7 3.3839 3.6883 3.7153 16 6 3.6609 3.1915 5.0653 17 6 3.0563 4.1483 6.0950 18 6 3.3408 3.6369 7.4837 19 1 3.8974 2.7212 7.6185 20 6 2.8913 4.3384 8.5822 21 7 2.2139 5.4537 8.4181 22 14 3.2445 3.7049 10.3037 23 1 4.5330 4.2662 10.7831 24 1 2.1518 4.1223 11.2185 25 1 3.3293 2.2226 10.2778 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.7161 -0.1661 -1.4262 34 1 3.7159 1.4602 -2.1498 35 1 5.1696 0.8555 -1.3190 36 1 2.6425 3.3149 -1.4346 37 1 4.3149 3.8668 -1.7778 38 1 2.4691 5.6456 -0.8543 39 1 4.1486 5.7013 -0.2222 40 1 1.6876 4.3484 1.0132 41 1 2.8795 5.4187 1.8104 42 1 2.8843 4.5110 3.5943 43 1 3.2201 2.2019 5.1859 44 1 4.7387 3.1300 5.2159 45 1 3.4975 5.1377 5.9744 46 1 1.9786 4.2102 5.9445 47 1 1.8980 5.9475 9.1909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344009020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:20 Heat of formation + Delta-G solvation = -60.073787 kcal Electronic energy + Delta-G solvation = -23173.773136 eV Core-core repulsion = 19969.334026 eV Total energy + Delta-G solvation = -3204.439110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41629 -38.03331 -35.79880 -34.73100 -32.93618 -32.31503 -31.44444 -29.29840 -27.91511 -26.65930 -24.93983 -23.56865 -22.15666 -21.74818 -20.96845 -19.89271 -18.87129 -17.58303 -16.56128 -16.20660 -15.57733 -15.26387 -14.68337 -14.54855 -14.42279 -14.07415 -13.75028 -13.47728 -13.29005 -13.10271 -12.87681 -12.54873 -12.31850 -12.20071 -12.14964 -11.86095 -11.54231 -11.38305 -11.13884 -11.12081 -11.02497 -10.97210 -10.60881 -10.54334 -10.39969 -10.32218 -10.22015 -9.75594 -9.49558 -9.22228 -8.62114 -8.42181 -8.09866 -6.07104 -4.09561 2.95622 3.31192 3.37180 3.41955 3.63946 4.28132 4.43061 4.45300 4.64662 4.70651 4.80196 4.92544 4.96597 5.17777 5.23079 5.27679 5.30024 5.36473 5.42073 5.47435 5.61427 5.62113 5.63814 5.75328 5.77293 5.84520 5.88530 5.96889 6.02241 6.08159 6.17351 6.20059 6.27655 6.37567 6.43775 6.45643 6.65705 6.80861 7.07310 7.39066 7.60106 7.66220 7.92303 8.28972 8.46403 8.95642 9.07896 9.55073 11.04636 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.003526 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.024500 B = 7938.497218 C = 8444.129131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.144 4.144 7 C 0.164 3.836 8 H 0.069 0.931 9 C -0.131 4.131 10 C -0.132 4.132 11 C 0.099 3.901 12 N -0.636 5.636 13 C 0.717 3.283 14 O -0.593 6.593 15 N -0.738 5.738 16 C 0.141 3.859 17 C 0.014 3.986 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -2.929 -22.787 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.126 4.126 5 H 0.108 0.892 6 C -0.202 4.202 7 C 0.060 3.940 8 H 0.087 0.913 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.376 5.376 13 C 0.419 3.581 14 O -0.471 6.471 15 N -0.392 5.392 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.847 -3.594 -22.427 22.729 hybrid contribution -0.145 0.253 1.008 1.049 sum -0.992 -3.341 -21.419 21.701 Atomic orbital electron populations 1.21766 0.96194 1.01299 1.01607 1.21567 0.95492 0.97314 1.01897 1.21610 0.94827 0.96456 1.01647 1.21544 0.95710 0.96325 0.99052 0.89185 1.21839 1.00827 1.00782 0.96730 1.21350 0.97828 0.92495 0.82373 0.91280 1.22807 1.02088 0.95049 0.96960 1.22743 1.01862 0.97141 0.95223 1.22241 0.94988 0.88297 0.96901 1.47628 1.54051 1.31607 1.04293 1.15564 0.80024 0.83241 0.79229 1.90865 1.46766 1.24786 1.84718 1.45571 1.59800 1.27817 1.05996 1.21576 0.99994 0.98597 0.78033 1.19317 0.96343 0.94291 0.92445 1.21058 1.35412 1.08990 0.90384 0.92231 1.24990 0.94955 0.94883 0.99449 1.69957 1.37276 1.15673 1.30490 0.86515 0.77899 0.79317 0.83854 1.20571 1.21188 1.19708 0.93076 0.93051 0.92752 0.92165 0.92049 0.91889 0.92350 0.92472 0.92799 0.92853 0.89956 0.90376 0.90073 0.90667 0.91702 0.90942 0.77488 0.92852 0.92870 0.96048 0.96032 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.33 5.71 -26.74 -0.15 -1.48 16 3 C -0.11 -1.19 4.20 -26.73 -0.11 -1.30 16 4 C -0.11 -1.26 2.10 -90.62 -0.19 -1.45 16 5 H 0.09 1.40 6.72 -51.93 -0.35 1.06 16 6 C -0.14 -1.32 8.74 37.16 0.32 -0.99 16 7 C 0.16 1.93 2.71 -66.95 -0.18 1.75 16 8 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.13 -1.07 5.18 -24.90 -0.13 -1.20 16 10 C -0.13 -1.05 7.08 -24.58 -0.17 -1.22 16 11 C 0.10 1.05 6.64 -2.53 -0.02 1.03 16 12 N -0.64 -8.86 2.17 -168.69 -0.37 -9.23 16 13 C 0.72 13.26 8.31 -86.92 -0.72 12.54 16 14 O -0.59 -13.05 15.21 5.29 0.08 -12.97 16 15 N -0.74 -13.83 5.52 -65.22 -0.36 -14.19 16 16 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 6.60 -51.93 -0.34 0.22 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.83 7.34 -51.93 -0.38 0.45 16 32 H 0.06 0.55 6.27 -51.93 -0.33 0.22 16 33 H 0.06 0.50 6.60 -51.93 -0.34 0.16 16 34 H 0.05 0.41 7.11 -51.93 -0.37 0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.62 5.57 -51.93 -0.29 0.33 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 42 H 0.39 6.50 6.87 -40.82 -0.28 6.22 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -31.81 363.11 -9.53 -41.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.51 Total: 2.12 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.56 Total: -3.49 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.01 Total: -49.04 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.81 -9.53 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.739 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds