Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46910 * 2 1 4 4 C 1.52998 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46984 * 305.81797 * 4 3 2 6 6 C 1.53000 * 109.46880 * 65.81471 * 4 3 2 7 7 C 1.53001 * 109.47173 * 185.81541 * 4 3 2 8 8 H 1.09002 * 109.87217 * 60.96955 * 7 4 3 9 9 C 1.54319 * 109.88487 * 299.78862 * 7 4 3 10 10 C 1.55154 * 102.94429 * 218.39065 * 9 7 4 11 11 C 1.54909 * 101.57895 * 35.50357 * 10 9 7 12 12 N 1.47027 * 109.88100 * 181.98233 * 7 4 3 13 13 C 1.34773 * 125.64688 * 298.39834 * 12 7 4 14 14 O 1.21593 * 120.00557 * 4.98003 * 13 12 7 15 15 N 1.34783 * 120.00137 * 184.98573 * 13 12 7 16 16 C 1.46496 * 120.00142 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46846 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46786 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00536 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99719 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99708 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00122 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47092 * 89.99706 * 22 20 18 24 24 H 1.48496 * 109.46885 * 210.00225 * 22 20 18 25 25 H 1.48500 * 109.46764 * 329.99866 * 22 20 18 26 26 H 1.09003 * 109.47480 * 60.00367 * 1 2 3 27 27 H 1.09002 * 109.47610 * 299.99789 * 1 2 3 28 28 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47428 * 120.00210 * 2 1 3 30 30 H 1.09003 * 109.47091 * 240.00250 * 2 1 3 31 31 H 1.09010 * 109.47106 * 300.00144 * 3 2 1 32 32 H 1.09003 * 109.47039 * 60.00218 * 3 2 1 33 33 H 1.09002 * 109.47022 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.47651 * 300.00272 * 6 4 3 35 35 H 1.09008 * 109.47347 * 60.00741 * 6 4 3 36 36 H 1.09009 * 110.71878 * 336.75634 * 9 7 4 37 37 H 1.08997 * 110.71748 * 100.02557 * 9 7 4 38 38 H 1.09004 * 111.00393 * 277.42739 * 10 9 7 39 39 H 1.08999 * 111.03669 * 153.59070 * 10 9 7 40 40 H 1.09001 * 110.36331 * 204.15156 * 11 10 9 41 41 H 1.09002 * 110.36699 * 81.83137 * 11 10 9 42 42 H 0.96996 * 119.99283 * 359.97438 * 15 13 12 43 43 H 1.09001 * 109.46986 * 299.99539 * 16 15 13 44 44 H 1.08994 * 109.47300 * 59.99885 * 16 15 13 45 45 H 1.09001 * 109.47218 * 300.00166 * 17 16 15 46 46 H 1.09000 * 109.47166 * 60.00649 * 17 16 15 47 47 H 0.97005 * 119.99531 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8411 0.8324 6 6 4.0793 0.8519 -1.3169 7 6 4.0799 2.8777 0.1455 8 1 3.7348 3.2992 1.0896 9 6 3.5746 3.7369 -1.0326 10 6 4.7894 4.6510 -1.3423 11 6 5.9765 3.6960 -1.0619 12 7 5.5493 2.8934 0.0984 13 6 6.3698 2.2755 0.9710 14 8 5.9069 1.5630 1.8409 15 7 7.7035 2.4473 0.8796 16 6 8.5953 1.7761 1.8284 17 6 10.0469 2.1359 1.5059 18 6 10.9643 1.4459 2.4824 19 1 10.5531 0.8137 3.2554 20 6 12.3287 1.6210 2.3882 21 7 13.1293 1.0185 3.2400 22 14 13.0401 2.7139 1.0507 23 1 13.1461 4.1069 1.5541 24 1 14.3885 2.2199 0.6729 25 1 12.1508 2.6836 -0.1383 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9564 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 5.1694 0.8523 -1.3175 34 1 3.7160 -0.1705 -1.4211 35 1 3.7157 1.4534 -2.1500 36 1 3.3345 3.1103 -1.8917 37 1 2.7110 4.3311 -0.7339 38 1 4.8126 5.5104 -0.6722 39 1 4.7829 4.9707 -2.3843 40 1 6.8730 4.2665 -0.8191 41 1 6.1571 3.0523 -1.9228 42 1 8.0727 3.0154 0.1855 43 1 8.3571 2.0992 2.8418 44 1 8.4629 0.6970 1.7506 45 1 10.2849 1.8125 0.4925 46 1 10.1797 3.2150 1.5836 47 1 14.0892 1.1419 3.1740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344009026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = -55.815195 kcal Electronic energy + Delta-G solvation = -22979.943415 eV Core-core repulsion = 19775.688971 eV Total energy + Delta-G solvation = -3204.254444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47472 -38.12240 -36.00493 -34.87258 -32.89072 -32.20214 -31.57583 -29.75258 -28.16336 -26.69976 -25.09497 -23.64420 -22.25402 -21.71319 -20.77307 -19.91969 -18.92881 -17.59736 -16.92210 -16.57598 -15.63366 -15.34097 -14.90519 -14.46315 -14.18270 -14.16307 -14.12265 -13.64795 -13.25674 -13.15086 -12.87961 -12.83150 -12.56852 -12.30488 -12.09878 -11.81433 -11.69497 -11.53482 -11.38983 -11.25785 -11.15953 -10.90786 -10.68397 -10.51836 -10.41047 -10.34273 -10.16226 -9.94785 -9.61788 -9.29681 -8.70069 -8.59604 -8.21613 -6.09268 -4.08984 2.86456 3.26153 3.33590 3.35098 3.55199 4.20932 4.37819 4.39182 4.55580 4.60185 4.75209 4.82761 4.88976 5.06676 5.12936 5.20536 5.23676 5.32235 5.33409 5.42093 5.52125 5.57587 5.59505 5.62214 5.72038 5.77983 5.83488 5.87511 5.97838 6.04054 6.04685 6.08445 6.12427 6.28168 6.31568 6.37417 6.55924 6.61430 6.87581 7.15396 7.27448 7.37845 7.69772 8.31556 8.47959 8.94868 8.98563 9.50969 11.03852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.003367 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.048963 B = 8312.876398 C = 9027.097147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.106 4.106 5 H 0.090 0.910 6 C -0.141 4.141 7 C 0.164 3.836 8 H 0.070 0.930 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.099 3.901 12 N -0.636 5.636 13 C 0.718 3.282 14 O -0.589 6.589 15 N -0.742 5.742 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.977 6.184 -13.417 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.126 4.126 5 H 0.108 0.892 6 C -0.198 4.198 7 C 0.059 3.941 8 H 0.088 0.912 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.376 5.376 13 C 0.420 3.580 14 O -0.467 6.467 15 N -0.396 5.396 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.023 5.564 -12.620 26.838 hybrid contribution 0.835 0.849 -0.970 1.536 sum -22.188 6.413 -13.590 26.798 Atomic orbital electron populations 1.21776 0.96176 1.01384 1.01553 1.21570 0.95384 0.97133 1.02289 1.21606 0.94674 0.96806 1.01692 1.21542 0.94758 0.96498 0.99768 0.89158 1.21832 1.01264 1.00183 0.96555 1.21354 0.79005 0.95362 0.98331 0.91228 1.22813 0.97917 0.97733 0.98468 1.22742 0.94334 0.97727 1.02164 1.22237 0.97921 0.93184 0.89074 1.47626 1.05976 1.55039 1.28911 1.15535 0.81203 0.80128 0.81134 1.90886 1.75528 1.42697 1.37590 1.45564 1.04332 1.53051 1.36633 1.21359 0.88865 0.96220 0.90922 1.19789 0.91211 0.96934 0.97948 1.20923 0.90603 1.29624 1.14789 0.90581 1.25002 0.97018 0.95504 0.95795 1.69908 1.03832 1.43375 1.36617 0.86746 0.78485 0.80998 0.82808 1.20256 1.21293 1.19112 0.92971 0.92860 0.92987 0.91930 0.91901 0.92089 0.92094 0.92797 0.92862 0.92962 0.89917 0.90301 0.90652 0.90061 0.91063 0.91685 0.77680 0.92221 0.92205 0.96098 0.96544 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.11 5.70 -26.73 -0.15 -1.27 16 3 C -0.11 -0.98 4.33 -26.73 -0.12 -1.09 16 4 C -0.11 -1.21 2.10 -90.62 -0.19 -1.40 16 5 H 0.09 1.37 6.75 -51.93 -0.35 1.02 16 6 C -0.14 -1.51 8.54 37.16 0.32 -1.19 16 7 C 0.16 1.84 2.71 -66.95 -0.18 1.66 16 8 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 9 C -0.13 -1.01 5.30 -24.90 -0.13 -1.14 16 10 C -0.13 -0.96 7.09 -24.58 -0.17 -1.14 16 11 C 0.10 0.97 6.68 -2.53 -0.02 0.95 16 12 N -0.64 -8.45 2.24 -168.69 -0.38 -8.83 16 13 C 0.72 12.77 8.31 -86.92 -0.72 12.04 16 14 O -0.59 -12.67 15.22 5.28 0.08 -12.59 16 15 N -0.74 -13.12 5.52 -65.23 -0.36 -13.48 16 16 C 0.15 3.17 5.61 -4.04 -0.02 3.15 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 22 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 6.59 -51.93 -0.34 0.21 16 31 H 0.06 0.46 7.26 -51.92 -0.38 0.09 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.69 7.57 -51.93 -0.39 0.29 16 34 H 0.05 0.55 6.59 -51.93 -0.34 0.21 16 35 H 0.05 0.46 6.07 -51.92 -0.32 0.14 16 36 H 0.08 0.58 5.46 -51.92 -0.28 0.30 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.67 7.12 -51.93 -0.37 0.30 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.39 5.90 6.87 -40.82 -0.28 5.62 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 46 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -32.60 359.78 -9.18 -41.78 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.48 Total: 1.97 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.57 Total: -4.02 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.04 Total: -49.12 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.60 -9.18 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.036 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds