Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 C 1.52995 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47533 * 53.90668 * 4 3 2 6 6 C 1.53000 * 109.47262 * 293.90575 * 4 3 2 7 7 C 1.53004 * 109.47074 * 173.90505 * 4 3 2 8 8 H 1.09001 * 109.99882 * 298.50636 * 7 4 3 9 9 C 1.54314 * 109.77478 * 59.66529 * 7 4 3 10 10 C 1.55153 * 102.86358 * 141.88625 * 9 7 4 11 11 C 1.54909 * 101.58054 * 324.29704 * 10 9 7 12 12 N 1.47025 * 109.88129 * 177.41141 * 7 4 3 13 13 C 1.34775 * 125.64641 * 61.67774 * 12 7 4 14 14 O 1.21585 * 120.00259 * 354.90021 * 13 12 7 15 15 N 1.34783 * 119.99797 * 174.89894 * 13 12 7 16 16 C 1.46497 * 119.99764 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46860 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47066 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99489 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00375 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46922 * 89.99609 * 22 20 18 24 24 H 1.48496 * 109.47276 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.46775 * 330.00153 * 22 20 18 26 26 H 1.08997 * 109.47550 * 300.00080 * 1 2 3 27 27 H 1.08998 * 109.46581 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47550 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47001 * 120.00261 * 2 1 3 31 31 H 1.09002 * 109.46928 * 60.00046 * 3 2 1 32 32 H 1.08997 * 109.46926 * 299.99855 * 3 2 1 33 33 H 1.08999 * 109.47061 * 178.44601 * 6 4 3 34 34 H 1.09004 * 109.47111 * 298.44577 * 6 4 3 35 35 H 1.09003 * 109.47229 * 58.44321 * 6 4 3 36 36 H 1.09000 * 110.92135 * 23.46666 * 9 7 4 37 37 H 1.09000 * 110.58939 * 260.14879 * 9 7 4 38 38 H 1.09005 * 111.00148 * 206.22926 * 10 9 7 39 39 H 1.09000 * 111.03939 * 82.39078 * 10 9 7 40 40 H 1.08991 * 110.37441 * 278.17371 * 11 10 9 41 41 H 1.09005 * 110.45694 * 155.89480 * 11 10 9 42 42 H 0.96999 * 120.00165 * 359.97438 * 15 13 12 43 43 H 1.08998 * 109.47172 * 299.99771 * 16 15 13 44 44 H 1.08997 * 109.47639 * 60.00177 * 16 15 13 45 45 H 1.08998 * 109.47083 * 299.99876 * 17 16 15 46 46 H 1.08996 * 109.47066 * 60.00456 * 17 16 15 47 47 H 0.97005 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8370 -0.8295 6 6 4.0795 0.8581 1.3197 7 6 4.0801 2.8768 -0.1525 8 1 3.7438 3.2926 -1.1024 9 6 3.5621 3.7426 1.0152 10 6 4.7709 4.6650 1.3239 11 6 5.9639 3.7118 1.0636 12 7 5.5489 2.8944 -0.0910 13 6 6.3786 2.2712 -0.9510 14 8 5.9252 1.5505 -1.8189 15 7 7.7110 2.4470 -0.8490 16 6 8.6128 1.7701 -1.7843 17 6 10.0607 2.1370 -1.4525 18 6 10.9884 1.4401 -2.4141 19 1 10.5856 0.7999 -3.1851 20 6 12.3514 1.6207 -2.3104 21 7 12.8418 2.4006 -1.3719 22 14 13.5014 0.7575 -3.5028 23 1 13.7271 1.6238 -4.6876 24 1 14.7986 0.4880 -2.8322 25 1 12.8925 -0.5256 -3.9366 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1691 0.8326 1.3089 34 1 3.7387 1.4794 2.1480 35 1 3.6935 -0.1539 1.4419 36 1 3.3178 3.1248 1.8793 37 1 2.6985 4.3300 0.7032 38 1 4.7546 4.9959 2.3624 39 1 4.7963 5.5173 0.6448 40 1 6.1403 3.0785 1.9329 41 1 6.8612 4.2816 0.8220 42 1 8.0728 3.0223 -0.1569 43 1 8.4822 0.6913 -1.6985 44 1 8.3830 2.0841 -2.8024 45 1 10.1910 3.2157 -1.5385 46 1 10.2908 1.8232 -0.4344 47 1 13.8007 2.5279 -1.2992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344009028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -60.045862 kcal Electronic energy + Delta-G solvation = -22918.528278 eV Core-core repulsion = 19714.090379 eV Total energy + Delta-G solvation = -3204.437899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40085 -38.04210 -35.95790 -34.74009 -32.91094 -32.16258 -31.48238 -29.26960 -28.08429 -26.66240 -24.93803 -23.63583 -22.21734 -21.73253 -20.90584 -19.83599 -18.89140 -17.54075 -16.66954 -16.26222 -15.59768 -15.23794 -14.82052 -14.53560 -14.36079 -14.12881 -13.95013 -13.51549 -13.18875 -13.08534 -12.78026 -12.72019 -12.29142 -12.22395 -12.03639 -11.76742 -11.65062 -11.42915 -11.21769 -11.11650 -11.01055 -10.87018 -10.65157 -10.60669 -10.47576 -10.35096 -10.25714 -9.75915 -9.49620 -9.22335 -8.62311 -8.42358 -8.09934 -6.07298 -4.09675 2.95171 3.31088 3.37049 3.41816 3.63591 4.27576 4.43596 4.45267 4.63251 4.66836 4.79466 4.87016 4.92401 5.11319 5.17036 5.26420 5.29846 5.36555 5.37979 5.49417 5.55962 5.62762 5.63731 5.66972 5.75591 5.81973 5.88923 5.91387 6.02938 6.07778 6.08522 6.14424 6.26421 6.36880 6.43720 6.46130 6.63665 6.80784 7.07177 7.39042 7.60018 7.66144 7.92178 8.28870 8.46234 8.95529 9.07688 9.54895 11.04449 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.003183 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.366331 B = 8795.276953 C = 9563.715322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.106 4.106 5 H 0.089 0.911 6 C -0.141 4.141 7 C 0.164 3.836 8 H 0.069 0.931 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.099 3.901 12 N -0.636 5.636 13 C 0.717 3.283 14 O -0.593 6.593 15 N -0.738 5.738 16 C 0.141 3.859 17 C 0.014 3.986 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 3.057 8.997 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.125 4.125 5 H 0.108 0.892 6 C -0.198 4.198 7 C 0.060 3.940 8 H 0.087 0.913 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.376 5.376 13 C 0.419 3.581 14 O -0.472 6.472 15 N -0.392 5.392 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.136 2.524 8.334 23.787 hybrid contribution 1.015 -0.084 -0.234 1.045 sum -21.121 2.440 8.100 22.752 Atomic orbital electron populations 1.21775 0.96195 1.01356 1.01553 1.21573 0.95359 0.97176 1.02272 1.21604 0.94735 0.96756 1.01682 1.21536 0.94680 0.96586 0.99727 0.89228 1.21830 1.01330 1.00128 0.96539 1.21342 0.79115 0.95278 0.98304 0.91299 1.22813 0.97913 0.97664 0.98541 1.22743 0.94328 0.97697 1.02201 1.22237 0.97986 0.92964 0.89219 1.47624 1.05870 1.54373 1.29696 1.15570 0.81255 0.80181 0.81078 1.90865 1.76061 1.42563 1.37662 1.45574 1.04119 1.52283 1.37221 1.21572 0.90016 0.95656 0.90940 1.19315 0.87952 0.97436 0.97691 1.21058 0.91075 1.28540 1.15156 0.92229 1.24997 0.98345 0.95297 0.95688 1.69960 1.12872 1.37738 1.32828 0.86510 0.80048 0.80061 0.80932 1.20572 1.21190 1.19708 0.92965 0.92870 0.93011 0.91966 0.91891 0.92074 0.92123 0.92757 0.92945 0.92914 0.89927 0.90369 0.90073 0.90664 0.91697 0.90941 0.77482 0.92854 0.92869 0.96049 0.96031 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.14 5.71 -26.73 -0.15 -1.29 16 3 C -0.11 -1.01 4.31 -26.73 -0.12 -1.12 16 4 C -0.11 -1.25 2.09 -90.62 -0.19 -1.44 16 5 H 0.09 1.40 6.77 -51.93 -0.35 1.04 16 6 C -0.14 -1.57 8.58 37.16 0.32 -1.25 16 7 C 0.16 1.93 2.72 -66.95 -0.18 1.75 16 8 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.13 -1.07 5.27 -24.90 -0.13 -1.20 16 10 C -0.13 -1.05 7.08 -24.58 -0.17 -1.22 16 11 C 0.10 1.05 6.68 -2.53 -0.02 1.03 16 12 N -0.64 -8.89 2.25 -168.69 -0.38 -9.27 16 13 C 0.72 13.30 8.31 -86.91 -0.72 12.57 16 14 O -0.59 -13.09 15.23 5.29 0.08 -13.00 16 15 N -0.74 -13.86 5.52 -65.23 -0.36 -14.22 16 16 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.06 0.48 7.24 -51.93 -0.38 0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.73 7.61 -51.93 -0.40 0.33 16 34 H 0.05 0.49 6.05 -51.93 -0.31 0.17 16 35 H 0.05 0.56 6.53 -51.93 -0.34 0.22 16 36 H 0.08 0.62 5.46 -51.93 -0.28 0.34 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 42 H 0.39 6.51 6.87 -40.82 -0.28 6.23 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -31.88 363.32 -9.55 -41.43 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.51 Total: 1.69 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.57 Total: -3.04 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.00 Total: -49.14 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.88 -9.55 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.613 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds