Wall clock time and date at job start Tue Mar 31 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 C 1.52995 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47533 * 53.90668 * 4 3 2 6 6 C 1.53000 * 109.47262 * 293.90575 * 4 3 2 7 7 C 1.53004 * 109.47074 * 173.90505 * 4 3 2 8 8 H 1.09001 * 109.99882 * 298.50636 * 7 4 3 9 9 C 1.54314 * 109.77478 * 59.66529 * 7 4 3 10 10 C 1.55153 * 102.86358 * 141.88625 * 9 7 4 11 11 C 1.54909 * 101.58054 * 324.29704 * 10 9 7 12 12 N 1.47025 * 109.88129 * 177.41141 * 7 4 3 13 13 C 1.34775 * 125.64641 * 61.67774 * 12 7 4 14 14 O 1.21585 * 120.00259 * 354.90021 * 13 12 7 15 15 N 1.34783 * 119.99797 * 174.89894 * 13 12 7 16 16 C 1.46497 * 119.99764 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46860 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47066 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00037 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99489 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00375 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46922 * 89.99609 * 22 20 18 24 24 H 1.48496 * 109.47276 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.46775 * 330.00153 * 22 20 18 26 26 H 1.08997 * 109.47550 * 300.00080 * 1 2 3 27 27 H 1.08998 * 109.46581 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47550 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47001 * 120.00261 * 2 1 3 31 31 H 1.09002 * 109.46928 * 60.00046 * 3 2 1 32 32 H 1.08997 * 109.46926 * 299.99855 * 3 2 1 33 33 H 1.08999 * 109.47061 * 178.44601 * 6 4 3 34 34 H 1.09004 * 109.47111 * 298.44577 * 6 4 3 35 35 H 1.09003 * 109.47229 * 58.44321 * 6 4 3 36 36 H 1.09000 * 110.92135 * 23.46666 * 9 7 4 37 37 H 1.09000 * 110.58939 * 260.14879 * 9 7 4 38 38 H 1.09005 * 111.00148 * 206.22926 * 10 9 7 39 39 H 1.09000 * 111.03939 * 82.39078 * 10 9 7 40 40 H 1.08991 * 110.37441 * 278.17371 * 11 10 9 41 41 H 1.09005 * 110.45694 * 155.89480 * 11 10 9 42 42 H 0.96999 * 120.00165 * 359.97438 * 15 13 12 43 43 H 1.08998 * 109.47172 * 299.99771 * 16 15 13 44 44 H 1.08997 * 109.47639 * 60.00177 * 16 15 13 45 45 H 1.08998 * 109.47083 * 299.99876 * 17 16 15 46 46 H 1.08996 * 109.47066 * 60.00456 * 17 16 15 47 47 H 0.97005 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8370 -0.8295 6 6 4.0795 0.8581 1.3197 7 6 4.0801 2.8768 -0.1525 8 1 3.7438 3.2926 -1.1024 9 6 3.5621 3.7426 1.0152 10 6 4.7709 4.6650 1.3239 11 6 5.9639 3.7118 1.0636 12 7 5.5489 2.8944 -0.0910 13 6 6.3786 2.2712 -0.9510 14 8 5.9252 1.5505 -1.8189 15 7 7.7110 2.4470 -0.8490 16 6 8.6128 1.7701 -1.7843 17 6 10.0607 2.1370 -1.4525 18 6 10.9884 1.4401 -2.4141 19 1 10.5856 0.7999 -3.1851 20 6 12.3514 1.6207 -2.3104 21 7 12.8418 2.4006 -1.3719 22 14 13.5014 0.7575 -3.5028 23 1 13.7271 1.6238 -4.6876 24 1 14.7986 0.4880 -2.8322 25 1 12.8925 -0.5256 -3.9366 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1691 0.8326 1.3089 34 1 3.7387 1.4794 2.1480 35 1 3.6935 -0.1539 1.4419 36 1 3.3178 3.1248 1.8793 37 1 2.6985 4.3300 0.7032 38 1 4.7546 4.9959 2.3624 39 1 4.7963 5.5173 0.6448 40 1 6.1403 3.0785 1.9329 41 1 6.8612 4.2816 0.8220 42 1 8.0728 3.0223 -0.1569 43 1 8.4822 0.6913 -1.6985 44 1 8.3830 2.0841 -2.8024 45 1 10.1910 3.2157 -1.5385 46 1 10.2908 1.8232 -0.4344 47 1 13.8007 2.5279 -1.2992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344009028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:29 Heat of formation + Delta-G solvation = -78.278254 kcal Electronic energy + Delta-G solvation = -22919.318894 eV Core-core repulsion = 19714.090379 eV Total energy + Delta-G solvation = -3205.228515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57974 -39.30938 -36.83236 -36.54616 -34.83550 -33.14482 -32.57558 -31.05384 -28.98378 -27.43342 -26.80314 -24.77629 -23.25843 -22.87840 -22.32461 -20.98798 -20.07649 -18.78225 -18.46447 -17.60323 -16.69905 -16.52427 -16.44034 -16.11809 -15.39812 -15.29705 -15.08280 -14.82695 -14.35795 -14.20642 -14.04094 -13.77883 -13.62853 -13.24032 -13.03642 -12.94921 -12.83174 -12.65749 -12.52716 -12.38752 -12.25209 -12.10686 -11.93361 -11.72171 -11.65237 -11.47908 -11.42651 -11.27901 -11.21774 -10.95390 -10.61796 -10.14700 -9.40852 -8.25446 -6.35976 1.40657 1.41631 1.52921 1.67664 2.15905 2.39953 3.09147 3.09426 3.67214 3.69341 3.83431 4.02740 4.11258 4.16953 4.30619 4.41734 4.43372 4.48023 4.50552 4.55194 4.62105 4.69829 4.82455 4.82949 4.88990 4.94650 4.97901 5.03611 5.09672 5.11159 5.15936 5.23251 5.27226 5.29352 5.33420 5.41127 5.48030 5.53007 5.54661 5.56073 5.65539 5.77961 6.10194 6.16529 6.76653 7.03303 7.33287 7.59931 8.86658 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.003183 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.366331 B = 8795.276953 C = 9563.715322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.101 4.101 4 C -0.102 4.102 5 H 0.041 0.959 6 C -0.135 4.135 7 C 0.154 3.846 8 H 0.053 0.947 9 C -0.119 4.119 10 C -0.121 4.121 11 C 0.088 3.912 12 N -0.631 5.631 13 C 0.712 3.288 14 O -0.635 6.635 15 N -0.735 5.735 16 C 0.163 3.837 17 C 0.027 3.973 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.267 1.267 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.403 0.597 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.008 0.992 46 H 0.008 0.992 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.446 3.962 10.472 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.139 4.139 4 C -0.122 4.122 5 H 0.059 0.941 6 C -0.192 4.192 7 C 0.050 3.950 8 H 0.071 0.929 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.035 4.035 12 N -0.368 5.368 13 C 0.414 3.586 14 O -0.517 6.517 15 N -0.390 5.390 16 C 0.038 3.962 17 C -0.011 4.011 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.191 1.191 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.238 0.762 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.540 3.467 9.857 25.755 hybrid contribution 1.410 -0.351 -0.662 1.597 sum -22.130 3.117 9.194 24.166 Atomic orbital electron populations 1.21745 0.94675 1.01845 1.02246 1.21573 0.96668 0.96927 1.01354 1.21551 0.92438 0.97094 1.02803 1.21438 0.96608 0.95868 0.98294 0.94058 1.21780 0.99414 1.00943 0.97029 1.21626 0.77684 0.96069 0.99617 0.92912 1.22821 0.98542 0.97240 0.97057 1.22754 0.92304 0.96756 1.04047 1.22572 0.99522 0.93361 0.87998 1.47667 1.06572 1.53246 1.29325 1.15714 0.81227 0.80260 0.81443 1.90833 1.76698 1.44482 1.39729 1.45280 1.04216 1.52447 1.37059 1.21045 0.89044 0.95035 0.91039 1.19101 0.89412 0.96157 0.96410 1.21447 0.92174 1.29109 1.15834 0.92401 1.25879 0.99953 0.95880 0.97420 1.70060 1.13531 1.38723 1.34247 0.85425 0.77809 0.79019 0.78682 1.19685 1.20330 1.19135 0.91561 0.92831 0.92712 0.94111 0.91712 0.89446 0.92313 0.95561 0.90100 0.92703 0.88443 0.88067 0.87061 0.90585 0.90652 0.91041 0.76174 0.94142 0.94072 0.97407 0.97411 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.22 5.71 30.60 0.17 -2.04 16 3 C -0.10 -1.71 4.31 30.59 0.13 -1.58 16 4 C -0.10 -2.41 2.09 -10.79 -0.02 -2.43 16 5 H 0.04 1.38 6.77 -2.39 -0.02 1.36 16 6 C -0.13 -2.88 8.58 71.98 0.62 -2.26 16 7 C 0.15 3.50 2.72 45.34 0.12 3.62 16 8 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 9 C -0.12 -1.51 5.27 31.78 0.17 -1.35 16 10 C -0.12 -1.49 7.08 31.98 0.23 -1.27 16 11 C 0.09 1.71 6.68 86.86 0.58 2.29 16 12 N -0.63 -17.61 2.25 -805.89 -1.81 -19.42 16 13 C 0.71 27.39 8.31 179.05 1.49 28.88 16 14 O -0.64 -29.65 15.23 -3.98 -0.06 -29.71 16 15 N -0.73 -28.56 5.52 -478.54 -2.64 -31.20 16 16 C 0.16 7.55 5.61 86.38 0.48 8.03 16 17 C 0.03 1.40 5.09 29.85 0.15 1.55 16 18 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.43 5.46 84.66 0.46 0.89 16 21 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 22 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 31 H 0.09 1.05 7.24 -2.39 -0.02 1.04 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.03 0.69 7.61 -2.39 -0.02 0.68 16 34 H 0.08 1.25 6.05 -2.38 -0.01 1.23 16 35 H 0.05 1.13 6.53 -2.39 -0.02 1.12 16 36 H 0.10 0.99 5.46 -2.39 -0.01 0.98 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.41 7.12 -2.38 -0.02 1.40 16 42 H 0.40 13.68 6.87 -92.71 -0.64 13.04 16 43 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -71.48 363.32 3.62 -67.85 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.29 Total: 18.96 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.53 Total: 1.85 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -4.16 Total: -105.33 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.48 3.62 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.426 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds