Wall clock time and date at job start Tue Mar 31 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47279 * 2 1 4 4 C 1.52996 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47710 * 53.88590 * 4 3 2 6 6 C 1.53002 * 109.47199 * 293.88403 * 4 3 2 7 7 C 1.52999 * 109.47302 * 173.88559 * 4 3 2 8 8 H 1.08994 * 109.87718 * 179.52319 * 7 4 3 9 9 C 1.54324 * 109.88292 * 58.50682 * 7 4 3 10 10 C 1.55151 * 102.94518 * 218.23759 * 9 7 4 11 11 C 1.54909 * 101.61576 * 35.48339 * 10 9 7 12 12 N 1.47022 * 110.00978 * 300.62673 * 7 4 3 13 13 C 1.34779 * 125.64849 * 298.48187 * 12 7 4 14 14 O 1.21587 * 119.99952 * 5.36733 * 13 12 7 15 15 N 1.34777 * 120.00338 * 185.36918 * 13 12 7 16 16 C 1.46495 * 120.00080 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47205 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99850 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47212 * 59.99749 * 22 20 18 24 24 H 1.48504 * 109.46884 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47118 * 299.99556 * 22 20 18 26 26 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47094 * 300.00208 * 1 2 3 28 28 H 1.09000 * 109.46699 * 60.00416 * 1 2 3 29 29 H 1.09003 * 109.47333 * 239.99672 * 2 1 3 30 30 H 1.09001 * 109.47080 * 119.99964 * 2 1 3 31 31 H 1.08994 * 109.47228 * 59.99874 * 3 2 1 32 32 H 1.09000 * 109.46916 * 299.99451 * 3 2 1 33 33 H 1.09001 * 109.46896 * 300.00128 * 6 4 3 34 34 H 1.08997 * 109.46772 * 60.00062 * 6 4 3 35 35 H 1.09003 * 109.47335 * 179.97438 * 6 4 3 36 36 H 1.09006 * 110.71765 * 99.87351 * 9 7 4 37 37 H 1.09002 * 110.72152 * 336.60127 * 9 7 4 38 38 H 1.08999 * 111.00813 * 153.57557 * 10 9 7 39 39 H 1.08996 * 111.00422 * 277.38898 * 10 9 7 40 40 H 1.08999 * 110.36572 * 81.85028 * 11 10 9 41 41 H 1.09008 * 110.36569 * 204.16772 * 11 10 9 42 42 H 0.97000 * 120.00014 * 0.02562 * 15 13 12 43 43 H 1.09000 * 109.47678 * 299.99944 * 16 15 13 44 44 H 1.08999 * 109.47311 * 60.00020 * 16 15 13 45 45 H 1.09002 * 109.47554 * 300.00529 * 17 16 15 46 46 H 1.09009 * 109.46568 * 60.00106 * 17 16 15 47 47 H 0.96993 * 120.00047 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8368 -0.8310 6 6 4.0806 0.8581 1.3180 7 6 4.0801 2.8767 -0.1543 8 1 5.1700 2.8852 -0.1471 9 6 3.5408 3.7516 0.9969 10 6 3.2379 5.1017 0.2948 11 6 2.7461 4.6269 -1.0953 12 7 3.5838 3.4551 -1.4115 13 6 3.8499 2.9912 -2.6486 14 8 4.4744 1.9575 -2.7889 15 7 3.4237 3.6731 -3.7303 16 6 3.7135 3.1690 -5.0749 17 6 3.1225 4.1225 -6.1153 18 6 3.4200 3.6037 -7.4985 19 1 3.9747 2.6855 -7.6231 20 6 2.9839 4.3013 -8.6051 21 7 2.3079 5.4191 -8.4534 22 14 3.3521 3.6577 -10.3196 23 1 2.7478 2.3112 -10.4833 24 1 2.7785 4.5833 -11.3294 25 1 4.8222 3.5670 -10.5092 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.7176 1.4638 2.1484 34 1 3.7172 -0.1637 1.4275 35 1 5.1706 0.8576 1.3174 36 1 4.2979 3.8806 1.7705 37 1 2.6305 3.3214 1.4145 38 1 2.4550 5.6484 0.8204 39 1 4.1404 5.7061 0.2045 40 1 1.6955 4.3402 -1.0484 41 1 2.8935 5.4110 -1.8380 42 1 2.9258 4.4980 -3.6184 43 1 4.7926 3.1031 -5.2136 44 1 3.2706 2.1804 -5.1956 45 1 2.0433 4.1881 -5.9766 46 1 3.5650 5.1114 -5.9947 47 1 2.0009 5.9096 -9.2318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344009031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:35 Heat of formation + Delta-G solvation = -60.136046 kcal Electronic energy + Delta-G solvation = -23167.496387 eV Core-core repulsion = 19963.054577 eV Total energy + Delta-G solvation = -3204.441810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41026 -38.03312 -35.80076 -34.73119 -32.93470 -32.31498 -31.44381 -29.29764 -27.91905 -26.66308 -24.93862 -23.56779 -22.15406 -21.75145 -20.96683 -19.89215 -18.87309 -17.58286 -16.55939 -16.20288 -15.57698 -15.26286 -14.68523 -14.55228 -14.42408 -14.07342 -13.74835 -13.47563 -13.29331 -13.10259 -12.87735 -12.55504 -12.31579 -12.20038 -12.15041 -11.85822 -11.54151 -11.38396 -11.14081 -11.12700 -11.01399 -10.96354 -10.62673 -10.54443 -10.40410 -10.31649 -10.21852 -9.75763 -9.49278 -9.23363 -8.62055 -8.41778 -8.09811 -6.06863 -4.09399 2.95552 3.33134 3.36620 3.40470 3.63876 4.28114 4.43185 4.45256 4.64678 4.70419 4.80236 4.92266 4.96564 5.17624 5.22920 5.27894 5.30144 5.36387 5.41985 5.47358 5.61378 5.62085 5.63832 5.75349 5.77236 5.84273 5.88534 5.96701 6.02119 6.08067 6.17250 6.19827 6.27708 6.37320 6.43785 6.45584 6.65842 6.80928 7.07388 7.39041 7.60017 7.66312 7.92390 8.29110 8.46394 8.95557 9.07904 9.55130 11.04838 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.003520 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.463231 B = 7951.649833 C = 8454.765061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.144 4.144 7 C 0.164 3.836 8 H 0.069 0.931 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.099 3.901 12 N -0.636 5.636 13 C 0.717 3.283 14 O -0.593 6.593 15 N -0.738 5.738 16 C 0.141 3.859 17 C 0.014 3.986 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -2.815 22.789 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.126 4.126 5 H 0.109 0.891 6 C -0.202 4.202 7 C 0.060 3.940 8 H 0.087 0.913 9 C -0.169 4.169 10 C -0.170 4.170 11 C -0.024 4.024 12 N -0.376 5.376 13 C 0.419 3.581 14 O -0.471 6.471 15 N -0.392 5.392 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.092 -3.474 22.434 22.728 hybrid contribution -0.140 0.227 -1.006 1.041 sum -1.231 -3.247 21.428 21.708 Atomic orbital electron populations 1.21766 0.96195 1.01303 1.01604 1.21569 0.95490 0.97310 1.01904 1.21612 0.94844 0.96464 1.01638 1.21545 0.95689 0.96343 0.99070 0.89149 1.21837 1.00830 1.00784 0.96715 1.21339 0.97946 0.92519 0.82234 0.91317 1.22810 1.02082 0.95041 0.97000 1.22739 1.01906 0.97144 0.95173 1.22250 0.94902 0.88277 0.96991 1.47634 1.54036 1.31636 1.04274 1.15568 0.79999 0.83246 0.79248 1.90864 1.46810 1.24557 1.84904 1.45570 1.60071 1.27620 1.05918 1.21573 0.99909 0.98522 0.78196 1.19311 0.96403 0.94322 0.92321 1.21020 1.35713 1.08822 0.90384 0.92283 1.24989 0.94957 0.94862 0.99437 1.69945 1.37458 1.15637 1.30356 0.86574 0.78728 0.78735 0.83510 1.20109 1.21262 1.20102 0.93049 0.93073 0.92755 0.92046 0.92160 0.92328 0.91909 0.92808 0.92471 0.92848 0.90363 0.89973 0.90073 0.90668 0.91694 0.90919 0.77489 0.92864 0.92862 0.96045 0.96051 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.33 5.71 -26.73 -0.15 -1.48 16 3 C -0.11 -1.19 4.20 -26.73 -0.11 -1.30 16 4 C -0.11 -1.26 2.11 -90.62 -0.19 -1.45 16 5 H 0.09 1.41 6.70 -51.93 -0.35 1.06 16 6 C -0.14 -1.32 8.75 37.16 0.33 -0.99 16 7 C 0.16 1.93 2.69 -66.95 -0.18 1.75 16 8 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.13 -1.08 5.21 -24.90 -0.13 -1.20 16 10 C -0.13 -1.05 7.08 -24.59 -0.17 -1.22 16 11 C 0.10 1.05 6.64 -2.51 -0.02 1.03 16 12 N -0.64 -8.87 2.21 -168.66 -0.37 -9.24 16 13 C 0.72 13.27 8.31 -86.92 -0.72 12.54 16 14 O -0.59 -13.05 15.19 5.29 0.08 -12.97 16 15 N -0.74 -13.83 5.52 -65.23 -0.36 -14.19 16 16 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 17 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.57 6.60 -51.93 -0.34 0.22 16 31 H 0.06 0.55 6.26 -51.93 -0.32 0.22 16 32 H 0.06 0.83 7.34 -51.93 -0.38 0.45 16 33 H 0.05 0.41 7.15 -51.93 -0.37 0.04 16 34 H 0.06 0.51 6.60 -51.93 -0.34 0.16 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.62 5.57 -51.93 -0.29 0.33 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.07 0.76 7.11 -51.92 -0.37 0.39 16 42 H 0.39 6.50 6.87 -40.82 -0.28 6.22 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -31.79 363.14 -9.53 -41.32 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.51 Total: 2.15 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.56 Total: -3.49 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.00 Total: -49.06 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.79 -9.53 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.817 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds