Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47279 * 2 1 4 4 C 1.52996 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47710 * 53.88590 * 4 3 2 6 6 C 1.53002 * 109.47199 * 293.88403 * 4 3 2 7 7 C 1.52999 * 109.47302 * 173.88559 * 4 3 2 8 8 H 1.08994 * 109.87718 * 179.52319 * 7 4 3 9 9 C 1.54324 * 109.88292 * 58.50682 * 7 4 3 10 10 C 1.55151 * 102.94518 * 218.23759 * 9 7 4 11 11 C 1.54909 * 101.61576 * 35.48339 * 10 9 7 12 12 N 1.47022 * 110.00978 * 300.62673 * 7 4 3 13 13 C 1.34779 * 125.64849 * 298.48187 * 12 7 4 14 14 O 1.21587 * 119.99952 * 5.36733 * 13 12 7 15 15 N 1.34777 * 120.00338 * 185.36918 * 13 12 7 16 16 C 1.46495 * 120.00080 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47205 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99850 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47212 * 59.99749 * 22 20 18 24 24 H 1.48504 * 109.46884 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47118 * 299.99556 * 22 20 18 26 26 H 1.08999 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47094 * 300.00208 * 1 2 3 28 28 H 1.09000 * 109.46699 * 60.00416 * 1 2 3 29 29 H 1.09003 * 109.47333 * 239.99672 * 2 1 3 30 30 H 1.09001 * 109.47080 * 119.99964 * 2 1 3 31 31 H 1.08994 * 109.47228 * 59.99874 * 3 2 1 32 32 H 1.09000 * 109.46916 * 299.99451 * 3 2 1 33 33 H 1.09001 * 109.46896 * 300.00128 * 6 4 3 34 34 H 1.08997 * 109.46772 * 60.00062 * 6 4 3 35 35 H 1.09003 * 109.47335 * 179.97438 * 6 4 3 36 36 H 1.09006 * 110.71765 * 99.87351 * 9 7 4 37 37 H 1.09002 * 110.72152 * 336.60127 * 9 7 4 38 38 H 1.08999 * 111.00813 * 153.57557 * 10 9 7 39 39 H 1.08996 * 111.00422 * 277.38898 * 10 9 7 40 40 H 1.08999 * 110.36572 * 81.85028 * 11 10 9 41 41 H 1.09008 * 110.36569 * 204.16772 * 11 10 9 42 42 H 0.97000 * 120.00014 * 0.02562 * 15 13 12 43 43 H 1.09000 * 109.47678 * 299.99944 * 16 15 13 44 44 H 1.08999 * 109.47311 * 60.00020 * 16 15 13 45 45 H 1.09002 * 109.47554 * 300.00529 * 17 16 15 46 46 H 1.09009 * 109.46568 * 60.00106 * 17 16 15 47 47 H 0.96993 * 120.00047 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8368 -0.8310 6 6 4.0806 0.8581 1.3180 7 6 4.0801 2.8767 -0.1543 8 1 5.1700 2.8852 -0.1471 9 6 3.5408 3.7516 0.9969 10 6 3.2379 5.1017 0.2948 11 6 2.7461 4.6269 -1.0953 12 7 3.5838 3.4551 -1.4115 13 6 3.8499 2.9912 -2.6486 14 8 4.4744 1.9575 -2.7889 15 7 3.4237 3.6731 -3.7303 16 6 3.7135 3.1690 -5.0749 17 6 3.1225 4.1225 -6.1153 18 6 3.4200 3.6037 -7.4985 19 1 3.9747 2.6855 -7.6231 20 6 2.9839 4.3013 -8.6051 21 7 2.3079 5.4191 -8.4534 22 14 3.3521 3.6577 -10.3196 23 1 2.7478 2.3112 -10.4833 24 1 2.7785 4.5833 -11.3294 25 1 4.8222 3.5670 -10.5092 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.7176 1.4638 2.1484 34 1 3.7172 -0.1637 1.4275 35 1 5.1706 0.8576 1.3174 36 1 4.2979 3.8806 1.7705 37 1 2.6305 3.3214 1.4145 38 1 2.4550 5.6484 0.8204 39 1 4.1404 5.7061 0.2045 40 1 1.6955 4.3402 -1.0484 41 1 2.8935 5.4110 -1.8380 42 1 2.9258 4.4980 -3.6184 43 1 4.7926 3.1031 -5.2136 44 1 3.2706 2.1804 -5.1956 45 1 2.0433 4.1881 -5.9766 46 1 3.5650 5.1114 -5.9947 47 1 2.0009 5.9096 -9.2318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344009031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = -78.310310 kcal Electronic energy + Delta-G solvation = -23168.284482 eV Core-core repulsion = 19963.054577 eV Total energy + Delta-G solvation = -3205.229905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58578 -39.31238 -36.73484 -36.53529 -34.83295 -33.36675 -32.54284 -31.08208 -28.79197 -27.48051 -26.79561 -24.75274 -23.17570 -22.87607 -22.46842 -21.10703 -20.05557 -18.81507 -18.46431 -17.48699 -16.70944 -16.52459 -16.43718 -16.05504 -15.47672 -15.32734 -15.00247 -14.71509 -14.37249 -14.21953 -14.00167 -13.92665 -13.56417 -13.24495 -13.02202 -12.99940 -12.91460 -12.68435 -12.53451 -12.36022 -12.24869 -12.07136 -11.95451 -11.78043 -11.65279 -11.51755 -11.42573 -11.27921 -11.15742 -10.93926 -10.61104 -10.14473 -9.40714 -8.25000 -6.35753 1.40773 1.43641 1.51330 1.67963 2.16227 2.40213 3.09518 3.09874 3.65506 3.67428 3.90068 3.96675 4.05528 4.19858 4.34036 4.42290 4.44530 4.47890 4.49428 4.56876 4.63134 4.64599 4.80383 4.82375 4.86027 4.95682 4.99084 5.02623 5.07336 5.13350 5.16255 5.23396 5.27379 5.29496 5.34792 5.37872 5.43667 5.50689 5.54801 5.55980 5.68640 5.78000 6.10270 6.16645 6.76592 7.03395 7.33502 7.60188 8.86885 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.003520 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.463231 B = 7951.649833 C = 8454.765061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.105 4.105 5 H 0.041 0.959 6 C -0.137 4.137 7 C 0.153 3.847 8 H 0.052 0.948 9 C -0.119 4.119 10 C -0.121 4.121 11 C 0.088 3.912 12 N -0.631 5.631 13 C 0.712 3.288 14 O -0.635 6.635 15 N -0.735 5.735 16 C 0.162 3.838 17 C 0.027 3.973 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.268 1.268 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.403 0.597 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.007 0.993 46 H 0.008 0.992 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -2.231 24.902 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.138 4.138 4 C -0.124 4.124 5 H 0.060 0.940 6 C -0.195 4.195 7 C 0.050 3.950 8 H 0.071 0.929 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.034 4.034 12 N -0.368 5.368 13 C 0.414 3.586 14 O -0.517 6.517 15 N -0.390 5.390 16 C 0.038 3.962 17 C -0.010 4.010 18 C -0.587 4.587 19 H 0.076 0.924 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.238 0.762 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.728 -2.858 24.606 24.831 hybrid contribution 0.048 0.054 -1.615 1.616 sum -1.680 -2.804 22.991 23.222 Atomic orbital electron populations 1.21746 0.95199 1.01851 1.01789 1.21565 0.96350 0.97011 1.01322 1.21557 0.94047 0.96658 1.01562 1.21456 0.96316 0.95781 0.98883 0.94038 1.21791 1.00680 1.01256 0.95739 1.21627 0.97313 0.93488 0.82584 0.92941 1.22818 1.03158 0.94021 0.95656 1.22749 1.02824 0.97145 0.93139 1.22579 0.94965 0.86920 0.98981 1.47673 1.53480 1.32359 1.03294 1.15711 0.79717 0.82766 0.80425 1.90831 1.48662 1.26368 1.85847 1.45277 1.60603 1.28159 1.04959 1.21046 0.98611 0.97113 0.79418 1.19097 0.95360 0.94079 0.92512 1.21420 1.36198 1.09168 0.91957 0.92393 1.25866 0.94502 0.94974 1.03657 1.70048 1.38063 1.16657 1.31747 0.85491 0.78852 0.78366 0.78301 1.19372 1.20372 1.19330 0.92403 0.91203 0.94169 0.94938 0.90452 0.89489 0.94602 0.90117 0.92176 0.93130 0.88059 0.88506 0.87081 0.90585 0.90709 0.91029 0.76194 0.94060 0.94170 0.97447 0.97404 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.59 5.71 30.59 0.17 -2.41 16 3 C -0.10 -2.12 4.20 30.59 0.13 -1.99 16 4 C -0.10 -2.45 2.11 -10.79 -0.02 -2.48 16 5 H 0.04 1.39 6.70 -2.39 -0.02 1.37 16 6 C -0.14 -2.27 8.75 71.98 0.63 -1.64 16 7 C 0.15 3.49 2.69 45.34 0.12 3.62 16 8 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 9 C -0.12 -1.52 5.21 31.78 0.17 -1.35 16 10 C -0.12 -1.50 7.08 31.98 0.23 -1.28 16 11 C 0.09 1.72 6.64 86.85 0.58 2.29 16 12 N -0.63 -17.63 2.21 -805.78 -1.78 -19.41 16 13 C 0.71 27.44 8.31 179.05 1.49 28.93 16 14 O -0.64 -29.65 15.19 -3.99 -0.06 -29.71 16 15 N -0.73 -28.64 5.52 -478.54 -2.64 -31.28 16 16 C 0.16 7.56 5.61 86.38 0.48 8.04 16 17 C 0.03 1.42 5.09 29.85 0.15 1.57 16 18 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.51 5.46 84.66 0.46 0.97 16 21 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 22 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.33 6.60 -2.39 -0.02 1.31 16 31 H 0.09 1.33 6.26 -2.39 -0.01 1.31 16 32 H 0.04 0.94 7.34 -2.39 -0.02 0.92 16 33 H 0.08 0.92 7.15 -2.39 -0.02 0.90 16 34 H 0.06 0.96 6.60 -2.39 -0.02 0.95 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.10 1.00 5.57 -2.39 -0.01 0.98 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.07 1.42 7.11 -2.38 -0.02 1.41 16 42 H 0.40 13.73 6.87 -92.71 -0.64 13.09 16 43 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 46 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 47 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.57 363.14 3.66 -67.91 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.29 Total: 19.87 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.53 Total: 0.96 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.14 Total: -105.38 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.57 3.66 -67.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344009031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.400 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds