Wall clock time and date at job start Tue Mar 31 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 C 1.52997 * 109.47348 * 120.00339 * 2 1 3 5 5 H 1.09000 * 109.46750 * 299.99904 * 4 2 1 6 6 C 1.52997 * 109.47348 * 180.02562 * 4 2 1 7 7 C 1.52996 * 109.47613 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46953 * 59.99875 * 7 6 4 9 9 C 1.53006 * 109.47311 * 300.00129 * 8 7 6 10 10 H 1.08995 * 109.47508 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47005 * 300.00451 * 9 8 7 12 12 C 1.34781 * 119.99511 * 274.99503 * 11 9 8 13 13 O 1.21584 * 119.99970 * 359.97438 * 12 11 9 14 14 N 1.34771 * 119.99489 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99622 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 C 1.53001 * 109.47315 * 59.99816 * 4 2 1 26 26 H 1.09000 * 109.47117 * 299.99981 * 1 2 3 27 27 H 1.08996 * 109.47661 * 59.99762 * 1 2 3 28 28 H 1.08995 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47117 * 240.00018 * 2 1 3 30 30 H 1.09000 * 109.47139 * 60.00032 * 3 2 1 31 31 H 1.09002 * 109.47121 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46961 * 300.00191 * 3 2 1 33 33 H 1.09000 * 109.47117 * 299.99680 * 6 4 2 34 34 H 1.09008 * 109.46988 * 59.99780 * 6 4 2 35 35 H 1.08993 * 109.47763 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.46847 * 300.00126 * 7 6 4 37 37 H 1.09002 * 109.47469 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.46986 * 59.99930 * 8 7 6 39 39 H 0.97003 * 120.00113 * 94.99752 * 11 9 8 40 40 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 41 41 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 42 42 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 43 43 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 44 44 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 45 45 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.46986 * 59.99827 * 25 4 2 47 47 H 1.09009 * 109.46775 * 300.00041 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5700 -0.7207 1.2495 7 6 4.0801 -1.4415 2.4989 8 6 3.5706 -2.8842 2.4992 9 6 2.0406 -2.8848 2.4989 10 1 1.6776 -3.9125 2.4987 11 7 1.5518 -2.1940 3.6949 12 6 1.4231 -2.8662 4.8560 13 8 1.7122 -4.0459 4.9107 14 7 0.9730 -2.2308 5.9560 15 6 0.8336 -2.9613 7.2183 16 6 0.3086 -2.0151 8.2999 17 6 0.1647 -2.7666 9.5981 18 1 0.4223 -3.8142 9.6470 19 6 -0.2949 -2.1164 10.7238 20 7 -0.6082 -0.8405 10.6643 21 14 -0.4740 -3.0481 12.3329 22 1 -0.0595 -4.4604 12.1358 23 1 0.3867 -2.4198 13.3671 24 1 -1.8909 -3.0048 12.7749 25 6 1.5300 -2.1638 1.2492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 -1.2343 0.3595 34 1 3.9329 0.3071 1.2497 35 1 5.1700 -1.4415 2.4990 36 1 3.7164 -0.9275 3.3887 37 1 3.9336 -3.3976 3.3896 38 1 3.9343 -3.3980 1.6094 39 1 1.3207 -1.2529 3.6510 40 1 0.7420 -1.2898 5.9123 41 1 0.1334 -3.7860 7.0854 42 1 1.8046 -3.3542 7.5199 43 1 1.0092 -1.1906 8.4326 44 1 -0.6622 -1.6218 7.9986 45 1 -0.9312 -0.3830 11.4563 46 1 1.8933 -2.6776 0.3591 47 1 0.4399 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344011935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:07 Heat of formation + Delta-G solvation = -95.843845 kcal Electronic energy + Delta-G solvation = -22766.891586 eV Core-core repulsion = 19560.901369 eV Total energy + Delta-G solvation = -3205.990216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43654 -39.81849 -36.80796 -36.14891 -34.84335 -34.09854 -31.77971 -30.71716 -29.97432 -27.88699 -26.62648 -24.04793 -23.37891 -22.91773 -22.20175 -20.87814 -20.12303 -19.37493 -18.41288 -17.10275 -16.85897 -16.51369 -16.44325 -15.81002 -15.44002 -15.20026 -15.06892 -14.64307 -14.49029 -14.29926 -14.21873 -13.96811 -13.30367 -13.20976 -13.11790 -12.97993 -12.95248 -12.52156 -12.50332 -12.29909 -12.22902 -11.99972 -11.90797 -11.66486 -11.57866 -11.47646 -11.25600 -11.15558 -10.90712 -10.76887 -10.60743 -10.23566 -9.66264 -8.24125 -6.34282 1.41110 1.41877 1.55231 1.83002 2.21901 2.41647 3.10647 3.41491 3.69149 3.76893 3.84687 4.14788 4.17792 4.29396 4.44325 4.45466 4.49048 4.52373 4.57028 4.67290 4.76074 4.78910 4.82197 4.86724 4.89453 5.00725 5.09467 5.12317 5.13735 5.25054 5.26534 5.30846 5.31948 5.34878 5.44771 5.49249 5.53309 5.59049 5.59582 5.66909 5.71659 5.79841 6.09439 6.17789 6.78994 7.16976 7.35125 7.65522 8.88042 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025443 B = 0.002984 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.237508 B = 9379.800394 C = 9851.922832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.150 4.150 4 C -0.080 4.080 5 H 0.063 0.937 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.128 4.128 9 C 0.162 3.838 10 H 0.063 0.937 11 N -0.724 5.724 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.736 5.736 15 C 0.162 3.838 16 C 0.025 3.975 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.113 4.113 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.405 0.595 40 H 0.405 0.595 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.266 0.734 46 H 0.093 0.907 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 4.643 -25.089 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.099 4.099 5 H 0.082 0.918 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.167 4.167 9 C 0.057 3.943 10 H 0.081 0.919 11 N -0.381 5.381 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.390 5.390 15 C 0.037 3.963 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.151 4.151 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.242 0.758 40 H 0.240 0.760 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.223 3.712 -24.945 25.976 hybrid contribution -0.395 0.418 1.268 1.392 sum 5.828 4.130 -23.678 24.732 Atomic orbital electron populations 1.21924 0.95438 1.01920 1.01684 1.21081 0.95485 0.96182 0.97610 1.21904 1.01426 0.95747 1.01646 1.21183 0.95549 0.94797 0.98324 0.91847 1.21617 0.94708 1.00751 0.97466 1.21458 1.00279 0.94841 0.98668 1.21899 0.95246 0.97881 1.01637 1.20870 0.93734 0.96125 0.83536 0.91919 1.45147 1.71014 1.13934 1.07999 1.16218 0.78127 0.84758 0.81218 1.90845 1.59402 1.16538 1.85492 1.45230 1.70322 1.14337 1.09135 1.21037 0.98995 0.94618 0.81610 1.19119 0.95476 0.94425 0.92261 1.21492 1.44457 0.96972 0.95502 0.92389 1.25871 0.94671 0.95824 1.02805 1.70068 1.45212 1.10579 1.30733 0.85388 0.77984 0.78899 0.78730 1.19031 1.20170 1.20144 1.21911 1.01267 0.95871 0.96024 0.93199 0.92475 0.92357 0.90557 0.93181 0.91985 0.92543 0.90907 0.90960 0.91812 0.93293 0.94737 0.89594 0.75793 0.75993 0.93989 0.94091 0.97360 0.97313 0.92540 0.88876 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.84 71.98 0.64 -1.12 16 2 C -0.09 -0.91 2.51 -10.80 -0.03 -0.94 16 3 C -0.15 -1.57 8.84 71.98 0.64 -0.93 16 4 C -0.08 -1.00 1.60 -10.80 -0.02 -1.02 16 5 H 0.06 0.89 6.50 -2.39 -0.02 0.87 16 6 C -0.11 -1.36 4.85 30.59 0.15 -1.21 16 7 C -0.11 -2.01 5.77 30.59 0.18 -1.84 16 8 C -0.13 -2.70 5.60 30.60 0.17 -2.53 16 9 C 0.16 3.56 2.78 45.01 0.13 3.68 16 10 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 11 N -0.72 -18.32 4.24 -457.72 -1.94 -20.26 16 12 C 0.70 25.04 8.53 179.05 1.53 26.57 16 13 O -0.64 -28.60 16.01 -3.98 -0.06 -28.66 16 14 N -0.74 -26.90 5.56 -478.53 -2.66 -29.56 16 15 C 0.16 7.28 5.61 86.38 0.48 7.76 16 16 C 0.02 1.27 5.09 29.85 0.15 1.43 16 17 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.40 5.46 84.65 0.46 0.86 16 20 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 21 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.11 -1.63 4.54 30.61 0.14 -1.49 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.60 6.43 -2.39 -0.02 0.58 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.83 6.43 -2.38 -0.02 0.82 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.00 7.60 -2.39 -0.02 0.98 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.41 8.19 6.88 -92.71 -0.64 7.55 16 40 H 0.41 12.63 8.49 -92.71 -0.79 11.84 16 41 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.09 6.43 -2.38 -0.02 1.07 16 Total: -1.00 -68.31 361.89 2.01 -66.29 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.48 Total: 22.03 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.85 Total: -1.57 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -4.32 Total: -104.21 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.06 Total: -28.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.31 2.01 -66.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344011935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds