Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47066 * 119.99605 * 2 1 3 5 5 H 1.09002 * 109.47097 * 300.00046 * 4 2 1 6 6 C 1.53005 * 109.47197 * 59.99847 * 4 2 1 7 7 C 1.52997 * 109.47452 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46817 * 300.00239 * 7 6 4 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 7 6 10 10 H 1.09002 * 109.47398 * 59.99826 * 9 8 7 11 11 N 1.46500 * 109.47023 * 179.97438 * 9 8 7 12 12 C 1.34779 * 119.99793 * 274.99565 * 11 9 8 13 13 O 1.21578 * 120.00118 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99594 * 179.97438 * 12 11 9 15 15 C 1.46498 * 119.99664 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47166 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47533 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99618 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00422 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99510 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00326 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46814 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47115 * 119.99662 * 21 19 17 24 24 H 1.48491 * 109.47150 * 240.00153 * 21 19 17 25 25 C 1.52997 * 109.47060 * 299.99657 * 9 8 7 26 26 H 1.09002 * 109.47726 * 300.00407 * 1 2 3 27 27 H 1.09000 * 109.46925 * 60.00283 * 1 2 3 28 28 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47726 * 239.99593 * 2 1 3 30 30 H 1.08992 * 109.47399 * 59.99717 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46724 * 299.99231 * 3 2 1 33 33 H 1.09001 * 109.46812 * 300.00441 * 6 4 2 34 34 H 1.09002 * 109.46935 * 60.00099 * 6 4 2 35 35 H 1.09002 * 109.46695 * 59.99734 * 7 6 4 36 36 H 1.08993 * 109.47194 * 179.97438 * 7 6 4 37 37 H 1.08992 * 109.47063 * 299.99823 * 8 7 6 38 38 H 1.09004 * 109.46733 * 179.97438 * 8 7 6 39 39 H 0.97004 * 120.00223 * 94.99655 * 11 9 8 40 40 H 0.96995 * 120.00471 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.47300 * 300.00396 * 15 14 12 42 42 H 1.09000 * 109.47257 * 60.00791 * 15 14 12 43 43 H 1.09004 * 109.46815 * 300.00056 * 16 15 14 44 44 H 1.09003 * 109.47606 * 59.99728 * 16 15 14 45 45 H 0.97001 * 119.99859 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 9 8 47 47 H 1.09002 * 109.47153 * 300.00319 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2494 7 6 2.0393 -2.8847 2.4990 8 6 3.5693 -2.8847 2.4996 9 6 4.0793 -1.4422 2.4996 10 1 3.7156 -0.9282 3.3894 11 7 5.5443 -1.4423 2.5008 12 6 6.2172 -1.5436 3.6642 13 8 5.6084 -1.6354 4.7126 14 7 7.5650 -1.5441 3.6653 15 6 8.2964 -1.6537 4.9299 16 6 9.8009 -1.6296 4.6526 17 6 10.5534 -1.7429 5.9534 18 1 10.0126 -1.8236 6.8848 19 6 11.9321 -1.7436 5.9545 20 7 12.5906 -1.6459 4.8203 21 14 12.8648 -1.8834 7.5669 22 1 11.8988 -1.9807 8.6907 23 1 13.7179 -3.0986 7.5416 24 1 13.7189 -0.6826 7.7504 25 6 3.5699 -0.7212 1.2501 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 0.4399 -2.1636 1.2494 34 1 1.8932 -2.6776 0.3595 35 1 1.6756 -2.3706 3.3887 36 1 1.6756 -3.9122 2.4993 37 1 3.9330 -3.3987 1.6100 38 1 3.9322 -3.3980 3.3901 39 1 6.0301 -1.3693 1.6644 40 1 8.0507 -1.4712 2.8288 41 1 8.0329 -0.8161 5.5758 42 1 8.0324 -2.5895 5.4224 43 1 10.0647 -2.4670 4.0065 44 1 10.0647 -0.6936 4.1602 45 1 13.5606 -1.6467 4.8210 46 1 3.9335 0.3063 1.2497 47 1 3.9336 -1.2352 0.3603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344011951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = -80.343356 kcal Electronic energy + Delta-G solvation = -22318.477101 eV Core-core repulsion = 19113.159036 eV Total energy + Delta-G solvation = -3205.318064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11198 -38.83689 -35.76042 -34.64438 -33.56441 -32.74472 -30.40328 -29.66097 -28.68970 -27.24971 -24.67180 -23.37634 -22.36784 -21.05576 -20.59454 -20.22487 -19.81532 -17.90060 -16.46572 -16.21450 -15.34462 -15.08754 -15.01418 -14.51053 -14.32944 -14.17898 -13.91336 -13.73106 -13.62618 -13.29904 -13.10820 -12.74565 -12.52631 -12.26693 -11.95924 -11.63819 -11.57057 -11.34041 -11.24565 -11.15043 -11.03304 -10.89749 -10.70223 -10.59682 -10.39894 -10.28124 -10.20439 -9.83937 -9.51398 -9.21465 -8.90434 -8.46266 -8.19754 -6.07483 -4.09787 3.09985 3.29851 3.37414 3.43132 3.66060 4.32018 4.40001 4.46619 4.52842 4.71765 4.78774 4.91884 4.94820 5.11132 5.14543 5.27869 5.29721 5.32140 5.38124 5.41972 5.42951 5.45933 5.57914 5.65923 5.71973 5.83345 5.87080 5.91093 5.94139 5.98230 6.11772 6.16861 6.21936 6.31254 6.37504 6.43719 6.75171 6.82219 7.06035 7.32158 7.60536 7.66244 7.92290 8.29030 8.50845 8.95853 9.07516 9.54876 11.04287 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038832 B = 0.002531 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.882274 B =11059.620644 C =11434.971125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.078 4.078 5 H 0.073 0.927 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.131 4.131 9 C 0.166 3.834 10 H 0.085 0.915 11 N -0.750 5.750 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.740 5.740 15 C 0.141 3.859 16 C 0.012 3.988 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.392 0.608 40 H 0.392 0.608 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 1.928 -13.358 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.097 4.097 5 H 0.091 0.909 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.169 4.169 9 C 0.061 3.939 10 H 0.103 0.897 11 N -0.406 5.406 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.393 5.393 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.353 1.855 -12.405 26.508 hybrid contribution 1.180 -0.035 -0.023 1.180 sum -22.173 1.820 -12.428 25.484 Atomic orbital electron populations 1.21898 0.95343 1.01814 1.01606 1.21128 0.95642 0.96159 0.98000 1.21915 1.01395 0.95919 1.01623 1.21146 0.94328 0.95967 0.98244 0.90888 1.21682 1.00349 0.95059 0.98295 1.21490 0.95368 1.00424 0.98183 1.21959 0.95332 0.97181 1.02475 1.20708 0.78629 0.95727 0.98846 0.89711 1.45236 1.06636 1.80871 1.07817 1.16091 0.82279 0.77938 0.83885 1.90875 1.68030 1.58189 1.30646 1.45542 1.04030 1.78125 1.11650 1.21566 0.93538 1.00432 0.82691 1.19330 0.87400 0.97771 0.98002 1.21100 0.91239 1.50550 0.92877 0.92171 1.25004 0.97779 0.95077 0.96536 1.69970 1.07572 1.50446 1.25408 0.86455 0.79804 0.77624 0.83678 1.19566 1.20964 1.20956 1.21919 0.95643 1.00962 0.97519 0.92705 0.92960 0.92374 0.91285 0.92670 0.92251 0.92942 0.91692 0.92009 0.91793 0.91923 0.92108 0.91275 0.77481 0.77475 0.92870 0.92862 0.96001 0.95997 0.92946 0.91009 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.84 37.15 0.33 -0.57 16 2 C -0.09 -0.60 2.51 -90.62 -0.23 -0.82 16 3 C -0.15 -1.01 8.84 37.16 0.33 -0.68 16 4 C -0.08 -0.58 1.77 -90.62 -0.16 -0.74 16 5 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.12 -0.85 4.85 -26.73 -0.13 -0.98 16 7 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 8 C -0.13 -1.45 5.49 -26.73 -0.15 -1.60 16 9 C 0.17 1.92 2.45 -67.93 -0.17 1.75 16 10 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 11 N -0.75 -9.77 5.08 -58.68 -0.30 -10.07 16 12 C 0.70 12.52 8.53 -86.91 -0.74 11.78 16 13 O -0.60 -13.12 16.00 5.30 0.08 -13.04 16 14 N -0.74 -13.43 5.56 -65.23 -0.36 -13.80 16 15 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 18 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 21 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.12 -1.04 4.32 -26.73 -0.12 -1.15 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 4.04 8.62 -40.82 -0.35 3.68 16 40 H 0.39 6.12 8.49 -40.82 -0.35 5.78 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -31.91 366.32 -9.84 -41.75 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.73 Total: 3.02 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.77 Total: -4.33 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.08 Total: -49.48 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.91 -9.84 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344011951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.593 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds