Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46632 * 2 1 4 4 C 1.52996 * 109.47328 * 119.99976 * 2 1 3 5 5 H 1.09001 * 109.47372 * 300.00367 * 4 2 1 6 6 C 1.53002 * 109.46891 * 60.00403 * 4 2 1 7 7 C 1.52996 * 109.46891 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47328 * 299.99597 * 7 6 4 9 9 C 1.52997 * 109.47060 * 60.00126 * 8 7 6 10 10 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47188 * 59.99892 * 9 8 7 12 12 C 1.34784 * 120.00075 * 85.00024 * 11 9 8 13 13 O 1.21592 * 119.99578 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00414 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99846 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46746 * 180.02562 * 15 14 12 17 17 C 1.50692 * 109.46653 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00591 * 0.02562 * 17 16 15 19 19 C 1.37888 * 119.99811 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99793 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46937 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46837 * 120.00071 * 21 19 17 24 24 H 1.48499 * 109.47190 * 240.00104 * 21 19 17 25 25 C 1.52997 * 109.46975 * 179.97438 * 4 2 1 26 26 H 1.09001 * 109.47194 * 299.99548 * 1 2 3 27 27 H 1.09002 * 109.47398 * 59.99728 * 1 2 3 28 28 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47194 * 240.00452 * 2 1 3 30 30 H 1.09004 * 109.46832 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47457 * 300.00244 * 3 2 1 32 32 H 1.09001 * 109.47420 * 60.00585 * 3 2 1 33 33 H 1.08992 * 109.47056 * 59.99654 * 6 4 2 34 34 H 1.09004 * 109.47006 * 299.99770 * 6 4 2 35 35 H 1.09004 * 109.47368 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47372 * 59.99964 * 7 6 4 37 37 H 1.09002 * 109.47398 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47194 * 300.00476 * 8 7 6 39 39 H 0.97002 * 120.00363 * 265.00226 * 11 9 8 40 40 H 0.96994 * 119.99639 * 0.02562 * 14 12 11 41 41 H 1.08999 * 109.46633 * 299.99894 * 15 14 12 42 42 H 1.08995 * 109.47343 * 60.00373 * 15 14 12 43 43 H 1.08995 * 109.46738 * 300.00017 * 16 15 14 44 44 H 1.08995 * 109.47079 * 59.99986 * 16 15 14 45 45 H 0.96997 * 120.00341 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47375 * 300.00370 * 25 4 2 47 47 H 1.09000 * 109.47140 * 60.00388 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0407 -2.8852 2.4980 8 6 3.5707 -2.8852 2.4973 9 6 4.0807 -1.4427 2.4974 10 1 5.1706 -1.4425 2.4964 11 7 3.5928 -0.7523 3.6938 12 6 4.2701 -0.8552 4.8546 13 8 5.2863 -1.5207 4.9085 14 7 3.8211 -0.2205 5.9554 15 6 4.5577 -0.3320 7.2169 16 6 3.8400 0.4765 8.2996 17 6 4.5974 0.3613 9.5973 18 1 5.5004 -0.2291 9.6450 19 6 4.1379 1.0106 10.7237 20 7 3.0391 1.7308 10.6652 21 14 5.0763 0.8673 12.3325 22 1 6.2700 0.0065 12.1343 23 1 5.5081 2.2172 12.7756 24 1 4.1970 0.2646 13.3664 25 6 3.5700 -0.7217 1.2488 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.8934 -2.6775 0.3591 34 1 0.4401 -2.1638 1.2491 35 1 1.6771 -3.9128 2.4982 36 1 1.6777 -2.3715 3.3882 37 1 3.9344 -3.3995 3.3869 38 1 3.9337 -3.3988 1.6071 39 1 2.7823 -0.2211 3.6507 40 1 3.0103 0.3101 5.9125 41 1 4.6065 -1.3785 7.5177 42 1 5.5677 0.0552 7.0833 43 1 3.7908 1.5230 7.9989 44 1 2.8301 0.0889 8.4331 45 1 2.7156 2.1873 11.4576 46 1 3.9330 -1.2358 0.3588 47 1 3.9337 0.3058 1.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344011954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -76.844382 kcal Electronic energy + Delta-G solvation = -22766.249684 eV Core-core repulsion = 19561.083347 eV Total energy + Delta-G solvation = -3205.166338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33012 -38.70730 -35.71650 -34.62979 -33.20394 -32.69168 -30.48702 -29.65377 -28.82637 -27.30035 -24.67387 -23.32000 -22.44186 -21.33993 -20.66588 -20.22738 -19.15699 -17.98749 -16.35327 -16.04549 -15.81414 -15.18087 -14.80708 -14.49625 -14.35664 -14.05244 -13.90924 -13.62978 -13.61435 -13.15202 -13.01943 -12.53713 -12.48672 -12.33976 -12.16414 -11.82368 -11.60842 -11.38302 -11.22757 -11.14701 -11.03034 -10.94235 -10.63439 -10.58657 -10.31284 -10.17824 -10.03650 -9.84448 -9.51648 -9.21397 -8.88277 -8.45824 -8.18516 -6.07263 -4.09534 3.15429 3.29936 3.37559 3.43340 3.68145 4.34539 4.41954 4.44059 4.52553 4.73377 4.80340 4.91598 4.99637 5.14189 5.16767 5.24558 5.29947 5.35103 5.40161 5.45026 5.46173 5.56837 5.61369 5.68067 5.70935 5.80575 5.89566 5.92149 5.99862 6.02448 6.12691 6.20253 6.26029 6.29801 6.37096 6.44360 6.77943 6.83523 7.07167 7.33485 7.61065 7.66691 7.92534 8.29478 8.52105 8.96181 9.09291 9.55105 11.04491 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.002984 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.981524 B = 9380.356518 C = 9852.112528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.069 0.931 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.131 4.131 9 C 0.166 3.834 10 H 0.085 0.915 11 N -0.745 5.745 12 C 0.698 3.302 13 O -0.600 6.600 14 N -0.740 5.740 15 C 0.141 3.859 16 C 0.013 3.987 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.123 4.123 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.391 0.609 40 H 0.392 0.608 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -4.102 -23.821 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.101 4.101 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.061 3.939 10 H 0.103 0.897 11 N -0.402 5.402 12 C 0.398 3.602 13 O -0.479 6.479 14 N -0.394 5.394 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.161 4.161 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.224 0.776 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.000 -4.610 -23.628 24.587 hybrid contribution -0.405 0.514 0.935 1.141 sum -5.404 -4.096 -22.693 23.685 Atomic orbital electron populations 1.21905 0.95358 1.01807 1.01661 1.21134 0.95656 0.96130 0.98000 1.21918 1.01309 0.95933 1.01706 1.21206 0.95054 0.95955 0.97931 0.91248 1.21656 1.00304 0.94988 0.98252 1.21484 0.95754 1.00162 0.98140 1.21942 0.95770 0.96918 1.02391 1.20668 0.99217 0.90927 0.83107 0.89674 1.45268 1.30081 1.55782 1.09100 1.16105 0.83241 0.80454 0.80419 1.90875 1.26196 1.46038 1.84755 1.45535 1.30259 1.53571 1.10009 1.21559 0.95141 1.00676 0.80815 1.19324 0.96102 0.95073 0.91977 1.21103 1.10080 1.30633 0.93976 0.92181 1.25001 0.95083 0.95080 0.99188 1.69965 1.21936 1.32017 1.29462 0.86462 0.79984 0.77874 0.83285 1.19566 1.20961 1.20957 1.21942 0.95517 1.01242 0.97409 0.92633 0.92996 0.92409 0.91348 0.92303 0.92976 0.92586 0.92099 0.91813 0.92299 0.91834 0.91263 0.91552 0.77443 0.77551 0.92893 0.92885 0.96014 0.96019 0.92950 0.90629 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.84 37.16 0.33 -0.64 16 2 C -0.09 -0.60 2.51 -90.62 -0.23 -0.83 16 3 C -0.15 -1.03 8.84 37.16 0.33 -0.70 16 4 C -0.08 -0.62 1.60 -90.62 -0.15 -0.76 16 5 H 0.07 0.56 6.51 -51.93 -0.34 0.22 16 6 C -0.11 -0.87 4.85 -26.73 -0.13 -1.00 16 7 C -0.12 -1.11 5.76 -26.73 -0.15 -1.27 16 8 C -0.13 -1.43 5.60 -26.73 -0.15 -1.58 16 9 C 0.17 1.88 2.78 -67.96 -0.19 1.69 16 10 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 11 N -0.75 -9.56 4.24 -58.70 -0.25 -9.81 16 12 C 0.70 12.39 8.53 -86.91 -0.74 11.65 16 13 O -0.60 -13.05 16.01 5.28 0.08 -12.96 16 14 N -0.74 -13.39 5.56 -65.22 -0.36 -13.75 16 15 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.12 -1.02 4.53 -26.76 -0.12 -1.14 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.39 4.16 6.88 -40.82 -0.28 3.88 16 40 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -31.65 361.88 -9.68 -41.34 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.55 Total: 3.45 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.78 Total: -4.68 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.13 Total: -49.15 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.65 -9.68 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344011954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.507 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds