Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.52998 * 109.46813 * 119.99559 * 2 1 3 5 5 C 1.50691 * 109.47334 * 239.99725 * 2 1 3 6 6 O 1.21282 * 120.00373 * 0.96626 * 5 2 1 7 7 N 1.34780 * 120.00132 * 180.96740 * 5 2 1 8 8 C 1.46928 * 120.62781 * 354.34616 * 7 5 2 9 9 C 1.53626 * 108.53605 * 126.37044 * 8 7 5 10 10 C 1.53041 * 109.24449 * 54.86160 * 9 8 7 11 11 N 1.46897 * 109.45878 * 178.48665 * 10 9 8 12 12 C 1.46898 * 111.00195 * 275.06499 * 11 10 9 13 13 C 1.53000 * 109.47223 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47166 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99972 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00138 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00265 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99986 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47250 * 89.99836 * 18 16 14 20 20 H 1.48504 * 109.46999 * 210.00116 * 18 16 14 21 21 H 1.48501 * 109.47259 * 329.99887 * 18 16 14 22 22 C 1.53039 * 109.53277 * 298.50641 * 10 9 8 23 23 C 1.46926 * 120.63063 * 174.63112 * 7 5 2 24 24 H 1.09006 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47401 * 60.00501 * 1 2 3 26 26 H 1.08996 * 109.47679 * 300.00386 * 1 2 3 27 27 H 1.08999 * 109.47366 * 74.34201 * 3 2 1 28 28 H 1.09005 * 109.47215 * 194.33369 * 3 2 1 29 29 H 1.08999 * 109.47498 * 314.33489 * 3 2 1 30 30 H 1.08997 * 109.47062 * 48.59823 * 4 2 1 31 31 H 1.09006 * 109.47191 * 168.59722 * 4 2 1 32 32 H 1.09004 * 109.47655 * 288.59405 * 4 2 1 33 33 H 1.08990 * 109.58899 * 246.20044 * 8 7 5 34 34 H 1.08994 * 109.58800 * 6.63270 * 8 7 5 35 35 H 1.09002 * 109.63580 * 294.86125 * 9 8 7 36 36 H 1.09007 * 109.45713 * 174.74250 * 9 8 7 37 37 H 1.08997 * 109.45117 * 58.52274 * 10 9 8 38 38 H 1.00906 * 111.00049 * 151.11104 * 11 10 9 39 39 H 1.09002 * 109.47247 * 300.00274 * 12 11 10 40 40 H 1.09002 * 109.46963 * 60.00432 * 12 11 10 41 41 H 1.09002 * 109.46915 * 300.00088 * 13 12 11 42 42 H 1.08990 * 109.47498 * 59.99922 * 13 12 11 43 43 H 0.96995 * 120.00054 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.50015 * 301.41297 * 22 10 9 45 45 H 1.09000 * 109.52135 * 181.33755 * 22 10 9 46 46 H 1.08995 * 109.58765 * 353.36969 * 23 7 5 47 47 H 1.09000 * 109.58427 * 113.65662 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2303 6 8 1.2444 -1.1560 -2.0375 7 7 3.3573 -0.8506 -1.4338 8 6 4.3249 -0.2110 -0.5319 9 6 5.2991 -1.2834 -0.0209 10 6 5.9325 -1.9999 -1.2156 11 7 6.8921 -3.0019 -0.7328 12 6 8.2052 -2.3942 -0.4795 13 6 9.1756 -3.4663 0.0203 14 6 10.5229 -2.8429 0.2795 15 1 10.6723 -1.7876 0.1049 16 6 11.5649 -3.6197 0.7397 17 7 12.7406 -3.0756 0.9664 18 14 11.3068 -5.4451 1.0411 19 1 11.6186 -6.2005 -0.1988 20 1 12.2031 -5.8977 2.1352 21 1 9.8934 -5.6882 1.4266 22 6 4.8408 -2.6925 -2.0345 23 6 3.8614 -1.6409 -2.5652 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 1.8995 1.8775 0.9895 28 1 3.0998 1.4532 -0.2544 29 1 1.4839 2.0245 -0.7350 30 1 1.5202 -1.6732 1.3568 31 1 3.1108 -0.9005 1.1536 32 1 1.8521 -0.1035 2.1276 33 1 4.8754 0.5585 -1.0730 34 1 3.7983 0.2374 0.3104 35 1 4.7601 -2.0054 0.5925 36 1 6.0796 -0.8104 0.5752 37 1 6.4504 -1.2734 -1.8417 38 1 6.9687 -3.7712 -1.3812 39 1 8.5886 -1.9595 -1.4026 40 1 8.1050 -1.6141 0.2752 41 1 8.7924 -3.9013 0.9434 42 1 9.2757 -4.2461 -0.7346 43 1 13.4737 -3.6222 1.2897 44 1 4.3061 -3.4013 -1.4022 45 1 5.2946 -3.2225 -2.8720 46 1 3.0288 -2.1361 -3.0648 47 1 4.3726 -0.9851 -3.2699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344327767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = -39.447714 kcal Electronic energy + Delta-G solvation = -23141.023026 eV Core-core repulsion = 19937.478330 eV Total energy + Delta-G solvation = -3203.544696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97603 -38.17059 -36.18092 -35.50348 -33.15744 -31.61959 -31.19890 -29.01815 -27.72985 -27.47343 -25.44386 -23.72306 -23.49657 -21.84261 -20.54617 -20.14344 -18.81280 -16.91664 -16.76184 -16.33394 -15.56806 -15.47659 -14.89065 -14.51871 -14.40203 -14.34324 -13.97683 -13.85912 -13.50407 -13.12781 -12.74887 -12.62146 -12.51657 -12.48287 -12.24273 -12.11930 -11.91833 -11.85342 -11.55776 -11.36153 -11.26786 -11.13328 -11.00676 -10.73539 -10.47292 -10.07280 -9.87195 -9.74725 -9.68407 -9.25669 -8.81798 -8.56112 -8.00997 -6.06888 -4.05510 2.45963 2.79901 3.30301 3.38062 3.43693 4.12334 4.37206 4.44142 4.44266 4.57306 4.62667 4.69595 4.88798 4.93523 5.11882 5.16736 5.21908 5.27625 5.28352 5.37102 5.38825 5.42450 5.48873 5.56786 5.59182 5.62734 5.67567 5.77092 5.77994 5.89053 5.93282 6.00669 6.07706 6.13825 6.17388 6.32816 6.39627 6.74144 7.10533 7.22705 7.34259 7.57472 7.71582 7.86676 8.00733 8.50207 8.96885 9.55560 11.06423 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.003098 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.621018 B = 9037.331008 C = 9268.237954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.160 4.160 4 C -0.158 4.158 5 C 0.526 3.474 6 O -0.545 6.545 7 N -0.607 5.607 8 C 0.084 3.916 9 C -0.125 4.125 10 C 0.088 3.912 11 N -0.691 5.691 12 C 0.074 3.926 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.263 1.263 22 C -0.135 4.135 23 C 0.114 3.886 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.337 0.663 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.008 0.992 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.751 7.206 -2.451 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 C -0.217 4.217 4 C -0.215 4.215 5 C 0.314 3.686 6 O -0.423 6.423 7 N -0.340 5.340 8 C -0.038 4.038 9 C -0.164 4.164 10 C -0.023 4.023 11 N -0.322 5.322 12 C -0.054 4.054 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.174 4.174 23 C -0.008 4.008 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.154 0.846 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.178 6.975 -2.168 24.302 hybrid contribution 0.591 -0.824 -0.733 1.251 sum -22.587 6.152 -2.901 23.589 Atomic orbital electron populations 1.21662 0.91962 1.02760 1.01914 1.20763 0.97961 0.96419 0.93784 1.22317 1.02476 0.93740 1.03198 1.22253 1.02740 1.00807 0.95716 1.20610 0.81641 0.79241 0.87106 1.90663 1.54977 1.50037 1.46586 1.48075 1.05476 1.51332 1.29149 1.22554 0.91144 0.95717 0.94426 1.22059 0.98331 0.97640 0.98327 1.21433 0.92625 0.93905 0.94311 1.60613 1.10378 1.10609 1.50593 1.21996 0.86384 0.98266 0.98732 1.19544 0.94394 0.94437 0.96384 1.21064 0.93232 0.97296 1.44441 0.91149 1.25009 0.94989 0.98630 0.94794 1.69912 1.01898 1.36263 1.46208 0.86749 0.78647 0.85664 0.78074 1.20405 1.21425 1.18763 1.22110 0.96907 0.98161 1.00178 1.21566 0.97925 0.93258 0.88099 0.92021 0.92051 0.92036 0.91125 0.90632 0.91955 0.91923 0.90449 0.91230 0.91219 0.87243 0.90681 0.90228 0.93983 0.84557 0.96062 0.91745 0.95689 0.97357 0.92705 0.90699 0.90775 0.89046 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 7.69 37.16 0.29 -0.80 16 2 C -0.09 -0.76 0.75 -155.67 -0.12 -0.87 16 3 C -0.16 -1.11 8.08 37.16 0.30 -0.81 16 4 C -0.16 -1.23 8.10 37.16 0.30 -0.93 16 5 C 0.53 6.21 6.48 -10.99 -0.07 6.14 16 6 O -0.55 -8.32 15.42 5.56 0.09 -8.23 16 7 N -0.61 -6.46 2.96 -172.51 -0.51 -6.97 16 8 C 0.08 0.76 3.89 -3.48 -0.01 0.75 16 9 C -0.12 -1.40 5.28 -26.38 -0.14 -1.54 16 10 C 0.09 1.10 2.45 -67.67 -0.17 0.93 16 11 N -0.69 -10.85 6.31 -106.68 -0.67 -11.53 16 12 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 13 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 14 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 15 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.70 27.47 -169.99 -4.67 17.04 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 23 C 0.11 1.22 6.41 -3.71 -0.02 1.20 16 24 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 28 H 0.08 0.51 4.68 -51.93 -0.24 0.27 16 29 H 0.06 0.44 8.06 -51.93 -0.42 0.03 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.08 0.63 4.00 -51.93 -0.21 0.42 16 32 H 0.07 0.43 7.94 -51.93 -0.41 0.02 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.11 0.82 2.92 -51.93 -0.15 0.67 16 35 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 36 H 0.08 0.94 7.42 -51.92 -0.39 0.56 16 37 H 0.04 0.55 7.80 -51.93 -0.40 0.15 16 38 H 0.34 5.06 8.33 -39.29 -0.33 4.73 16 39 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 40 H 0.06 1.25 7.41 -51.93 -0.38 0.87 16 41 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 42 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.09 1.07 7.04 -51.93 -0.37 0.70 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.23 351.18 -8.30 -40.53 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.24 Total: 0.57 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.36 Total: -9.71 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.41 Total: -45.49 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.23 -8.30 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344327767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.083 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds