Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.52998 * 109.46813 * 119.99559 * 2 1 3 5 5 C 1.50691 * 109.47334 * 239.99725 * 2 1 3 6 6 O 1.21282 * 120.00373 * 0.96626 * 5 2 1 7 7 N 1.34780 * 120.00132 * 180.96740 * 5 2 1 8 8 C 1.46928 * 120.62781 * 354.34616 * 7 5 2 9 9 C 1.53626 * 108.53605 * 126.37044 * 8 7 5 10 10 C 1.53041 * 109.24449 * 54.86160 * 9 8 7 11 11 N 1.46897 * 109.45878 * 178.48665 * 10 9 8 12 12 C 1.46898 * 111.00195 * 275.06499 * 11 10 9 13 13 C 1.53000 * 109.47223 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47166 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99972 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00138 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00265 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99986 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47250 * 89.99836 * 18 16 14 20 20 H 1.48504 * 109.46999 * 210.00116 * 18 16 14 21 21 H 1.48501 * 109.47259 * 329.99887 * 18 16 14 22 22 C 1.53039 * 109.53277 * 298.50641 * 10 9 8 23 23 C 1.46926 * 120.63063 * 174.63112 * 7 5 2 24 24 H 1.09006 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47401 * 60.00501 * 1 2 3 26 26 H 1.08996 * 109.47679 * 300.00386 * 1 2 3 27 27 H 1.08999 * 109.47366 * 74.34201 * 3 2 1 28 28 H 1.09005 * 109.47215 * 194.33369 * 3 2 1 29 29 H 1.08999 * 109.47498 * 314.33489 * 3 2 1 30 30 H 1.08997 * 109.47062 * 48.59823 * 4 2 1 31 31 H 1.09006 * 109.47191 * 168.59722 * 4 2 1 32 32 H 1.09004 * 109.47655 * 288.59405 * 4 2 1 33 33 H 1.08990 * 109.58899 * 246.20044 * 8 7 5 34 34 H 1.08994 * 109.58800 * 6.63270 * 8 7 5 35 35 H 1.09002 * 109.63580 * 294.86125 * 9 8 7 36 36 H 1.09007 * 109.45713 * 174.74250 * 9 8 7 37 37 H 1.08997 * 109.45117 * 58.52274 * 10 9 8 38 38 H 1.00906 * 111.00049 * 151.11104 * 11 10 9 39 39 H 1.09002 * 109.47247 * 300.00274 * 12 11 10 40 40 H 1.09002 * 109.46963 * 60.00432 * 12 11 10 41 41 H 1.09002 * 109.46915 * 300.00088 * 13 12 11 42 42 H 1.08990 * 109.47498 * 59.99922 * 13 12 11 43 43 H 0.96995 * 120.00054 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.50015 * 301.41297 * 22 10 9 45 45 H 1.09000 * 109.52135 * 181.33755 * 22 10 9 46 46 H 1.08995 * 109.58765 * 353.36969 * 23 7 5 47 47 H 1.09000 * 109.58427 * 113.65662 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0323 -0.7104 -1.2303 6 8 1.2444 -1.1560 -2.0375 7 7 3.3573 -0.8506 -1.4338 8 6 4.3249 -0.2110 -0.5319 9 6 5.2991 -1.2834 -0.0209 10 6 5.9325 -1.9999 -1.2156 11 7 6.8921 -3.0019 -0.7328 12 6 8.2052 -2.3942 -0.4795 13 6 9.1756 -3.4663 0.0203 14 6 10.5229 -2.8429 0.2795 15 1 10.6723 -1.7876 0.1049 16 6 11.5649 -3.6197 0.7397 17 7 12.7406 -3.0756 0.9664 18 14 11.3068 -5.4451 1.0411 19 1 11.6186 -6.2005 -0.1988 20 1 12.2031 -5.8977 2.1352 21 1 9.8934 -5.6882 1.4266 22 6 4.8408 -2.6925 -2.0345 23 6 3.8614 -1.6409 -2.5652 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 1.8995 1.8775 0.9895 28 1 3.0998 1.4532 -0.2544 29 1 1.4839 2.0245 -0.7350 30 1 1.5202 -1.6732 1.3568 31 1 3.1108 -0.9005 1.1536 32 1 1.8521 -0.1035 2.1276 33 1 4.8754 0.5585 -1.0730 34 1 3.7983 0.2374 0.3104 35 1 4.7601 -2.0054 0.5925 36 1 6.0796 -0.8104 0.5752 37 1 6.4504 -1.2734 -1.8417 38 1 6.9687 -3.7712 -1.3812 39 1 8.5886 -1.9595 -1.4026 40 1 8.1050 -1.6141 0.2752 41 1 8.7924 -3.9013 0.9434 42 1 9.2757 -4.2461 -0.7346 43 1 13.4737 -3.6222 1.2897 44 1 4.3061 -3.4013 -1.4022 45 1 5.2946 -3.2225 -2.8720 46 1 3.0288 -2.1361 -3.0648 47 1 4.3726 -0.9851 -3.2699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344327767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -60.950080 kcal Electronic energy + Delta-G solvation = -23141.955439 eV Core-core repulsion = 19937.478330 eV Total energy + Delta-G solvation = -3204.477109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82900 -39.19988 -37.05806 -36.69951 -35.01217 -33.12000 -32.10789 -30.57420 -28.29239 -28.13534 -26.78091 -25.07611 -24.44239 -22.84427 -22.12510 -21.17820 -19.67478 -18.93893 -17.76040 -17.17625 -16.69453 -16.42661 -16.27105 -15.90260 -15.38494 -15.24833 -15.14317 -14.88615 -14.78488 -14.54728 -14.02518 -13.74433 -13.41435 -13.27901 -13.19334 -13.11580 -12.92530 -12.83870 -12.74696 -12.55045 -12.21930 -12.18984 -11.92955 -11.89907 -11.76305 -11.69476 -11.41523 -11.30235 -11.27152 -10.76387 -10.56475 -9.72003 -9.31216 -8.29466 -6.33766 1.37049 1.39576 1.52274 1.57257 1.97453 2.37078 3.06462 3.20414 3.37706 3.75521 3.78555 3.84859 3.92586 4.05502 4.17053 4.26977 4.30747 4.44698 4.48806 4.56181 4.58010 4.62347 4.68572 4.73297 4.76501 4.80618 4.85453 4.89823 4.95430 4.97151 5.00707 5.06202 5.15352 5.22258 5.27552 5.32289 5.34889 5.41440 5.51184 5.53495 5.64981 6.18008 6.26920 6.37452 6.54433 6.75394 7.12064 7.31413 8.87143 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.003098 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.621018 B = 9037.331008 C = 9268.237954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.158 4.158 4 C -0.156 4.156 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.606 5.606 8 C 0.089 3.911 9 C -0.121 4.121 10 C 0.086 3.914 11 N -0.690 5.690 12 C 0.090 3.910 13 C -0.005 4.005 14 C -0.532 4.532 15 H 0.033 0.967 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.247 1.247 22 C -0.124 4.124 23 C 0.115 3.885 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.342 0.658 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.016 0.984 43 H 0.266 0.734 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 6.951 -1.887 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.088 4.088 3 C -0.215 4.215 4 C -0.213 4.213 5 C 0.308 3.692 6 O -0.468 6.468 7 N -0.338 5.338 8 C -0.033 4.033 9 C -0.160 4.160 10 C -0.023 4.023 11 N -0.322 5.322 12 C -0.039 4.039 13 C -0.043 4.043 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.776 3.224 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.171 1.171 22 C -0.162 4.162 23 C -0.009 4.009 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.160 0.840 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.485 6.734 -1.606 25.444 hybrid contribution 1.005 -0.668 -0.938 1.529 sum -23.480 6.065 -2.544 24.384 Atomic orbital electron populations 1.21658 0.92009 1.01948 1.02525 1.20826 0.97965 0.97365 0.92602 1.22327 1.02418 0.92243 1.04516 1.22252 1.02265 1.00747 0.95987 1.21253 0.81574 0.78797 0.87584 1.90641 1.55991 1.51919 1.48218 1.48171 1.05564 1.50958 1.29114 1.22655 0.90592 0.95070 0.94978 1.22017 0.98449 0.97938 0.97622 1.21531 0.92284 0.93383 0.95140 1.60545 1.08789 1.11356 1.51482 1.21646 0.87338 0.96795 0.98155 1.19439 0.92854 0.95460 0.96521 1.21421 0.95714 0.95961 1.43962 0.94845 1.25988 0.94548 1.04050 0.94581 1.70062 1.03070 1.38404 1.47654 0.85621 0.79320 0.79121 0.78331 1.19257 1.21093 1.17100 1.21995 0.96221 0.97913 1.00091 1.21547 0.97446 0.93432 0.88425 0.93576 0.93197 0.89603 0.88893 0.90327 0.92251 0.92866 0.90726 0.88919 0.90017 0.85279 0.91221 0.90747 0.94001 0.83961 0.96650 0.92205 0.95958 0.96589 0.92475 0.91544 0.89710 0.90171 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 7.69 71.98 0.55 -1.44 16 2 C -0.08 -1.34 0.75 -52.93 -0.04 -1.38 16 3 C -0.16 -1.77 8.08 71.98 0.58 -1.19 16 4 C -0.16 -2.07 8.10 71.98 0.58 -1.48 16 5 C 0.52 11.81 6.48 87.65 0.57 12.38 16 6 O -0.59 -18.04 15.42 -3.04 -0.05 -18.09 16 7 N -0.61 -12.06 2.96 -818.10 -2.42 -14.47 16 8 C 0.09 1.42 3.89 86.51 0.34 1.75 16 9 C -0.12 -2.50 5.28 30.82 0.16 -2.34 16 10 C 0.09 2.02 2.45 44.94 0.11 2.13 16 11 N -0.69 -20.52 6.31 -491.44 -3.10 -23.62 16 12 C 0.09 3.37 5.42 86.30 0.47 3.83 16 13 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 14 C -0.53 -30.39 9.66 25.60 0.25 -30.15 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 16 C 0.01 0.30 5.47 84.65 0.46 0.76 16 17 N -0.95 -59.43 13.96 21.44 0.30 -59.13 16 18 Si 0.95 44.22 27.47 68.60 1.88 46.11 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 22 C -0.12 -2.52 5.36 30.67 0.16 -2.35 16 23 C 0.11 2.32 6.41 86.36 0.55 2.87 16 24 H 0.05 0.87 8.11 -2.38 -0.02 0.85 16 25 H 0.05 0.90 8.09 -2.39 -0.02 0.89 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.65 7.92 -2.39 -0.02 0.64 16 28 H 0.08 0.83 4.68 -2.38 -0.01 0.82 16 29 H 0.06 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.07 1.03 4.00 -2.38 -0.01 1.02 16 32 H 0.09 0.82 7.94 -2.38 -0.02 0.80 16 33 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 34 H 0.13 1.58 2.92 -2.39 -0.01 1.57 16 35 H 0.07 1.53 7.38 -2.39 -0.02 1.51 16 36 H 0.07 1.64 7.42 -2.38 -0.02 1.62 16 37 H 0.04 1.02 7.80 -2.39 -0.02 1.00 16 38 H 0.34 9.58 8.33 -89.69 -0.75 8.83 16 39 H 0.02 0.59 8.06 -2.39 -0.02 0.57 16 40 H 0.06 2.29 7.41 -2.39 -0.02 2.27 16 41 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 42 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 46 H 0.08 1.84 7.04 -2.39 -0.02 1.83 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.49 351.18 1.64 -68.85 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.14 Total: 17.04 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.88 Total: -16.68 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -5.22 Total: -97.22 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -70.49 1.64 -68.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344327767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.898 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds