Wall clock time and date at job start Tue Mar 31 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46586 * 2 1 4 4 C 1.53003 * 109.46816 * 185.10452 * 3 2 1 5 5 H 1.09004 * 109.47167 * 55.86491 * 4 3 2 6 6 C 1.50702 * 109.47265 * 175.86550 * 4 3 2 7 7 O 1.21281 * 119.99371 * 31.11870 * 6 4 3 8 8 N 1.34769 * 120.00009 * 211.11650 * 6 4 3 9 9 C 1.46970 * 120.59295 * 184.54587 * 8 6 4 10 10 C 1.53373 * 108.63313 * 235.20472 * 9 8 6 11 11 N 1.46964 * 108.63633 * 310.57183 * 10 9 8 12 12 C 1.36931 * 120.59812 * 235.20488 * 11 10 9 13 13 H 1.08011 * 119.99524 * 31.22182 * 12 11 10 14 14 C 1.38811 * 120.00232 * 211.49740 * 12 11 10 15 15 N 1.31613 * 119.99589 * 10.34332 * 14 12 11 16 16 Si 1.86803 * 119.99960 * 190.34312 * 14 12 11 17 17 H 1.48496 * 109.47160 * 60.00044 * 16 14 12 18 18 H 1.48496 * 109.46838 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47073 * 299.99958 * 16 14 12 20 20 C 1.46967 * 118.80830 * 55.47921 * 11 10 9 21 21 C 1.46964 * 120.59801 * 4.52190 * 8 6 4 22 22 C 1.53004 * 109.47165 * 295.87148 * 4 3 2 23 23 C 1.52995 * 109.47057 * 178.82801 * 22 4 3 24 24 C 1.53001 * 109.46544 * 298.82751 * 22 4 3 25 25 H 1.09001 * 109.46916 * 60.00450 * 1 2 3 26 26 H 1.08997 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47449 * 300.00379 * 1 2 3 28 28 H 1.08995 * 109.46880 * 240.00115 * 2 1 3 29 29 H 1.08992 * 109.46876 * 119.99774 * 2 1 3 30 30 H 1.08999 * 109.47218 * 65.10468 * 3 2 1 31 31 H 1.09004 * 109.47361 * 305.09974 * 3 2 1 32 32 H 1.09002 * 109.61012 * 115.45804 * 9 8 6 33 33 H 1.09005 * 109.74956 * 355.03385 * 9 8 6 34 34 H 1.08998 * 109.60711 * 190.83222 * 10 9 8 35 35 H 1.08997 * 109.61102 * 70.31915 * 10 9 8 36 36 H 0.97011 * 119.99747 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.61116 * 64.26644 * 20 11 10 38 38 H 1.08998 * 109.60997 * 184.77490 * 20 11 10 39 39 H 1.08997 * 109.61097 * 244.54108 * 21 8 6 40 40 H 1.08997 * 109.60529 * 5.04836 * 21 8 6 41 41 H 1.08995 * 109.47185 * 58.82365 * 22 4 3 42 42 H 1.09004 * 109.47126 * 63.89168 * 23 22 4 43 43 H 1.09004 * 109.47062 * 183.88745 * 23 22 4 44 44 H 1.08998 * 109.47250 * 303.88793 * 23 22 4 45 45 H 1.08999 * 109.47667 * 65.23224 * 24 22 4 46 46 H 1.09007 * 109.46644 * 185.23226 * 24 22 4 47 47 H 1.08999 * 109.47412 * 305.23124 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4445 -0.1283 5 1 3.8546 0.8938 -1.0232 6 6 4.0583 2.8647 -0.2305 7 8 3.4561 3.7575 0.3273 8 7 5.1689 3.1425 -0.9416 9 6 5.7183 4.5054 -0.9687 10 6 5.8390 4.9561 -2.4297 11 7 6.5227 3.9016 -3.1916 12 6 7.6511 4.1839 -3.9141 13 1 8.3270 4.9572 -3.5798 14 6 7.9234 3.4802 -5.0793 15 7 7.0083 2.6905 -5.6000 16 14 9.5885 3.6541 -5.9079 17 1 10.6556 3.2219 -4.9702 18 1 9.6260 2.8058 -7.1262 19 1 9.8071 5.0733 -6.2866 20 6 5.9701 2.5400 -3.1690 21 6 5.8526 2.0880 -1.7035 22 6 4.1809 0.7775 1.1030 23 6 5.7041 0.7533 0.9611 24 6 3.7978 1.5674 2.3561 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7531 1.9293 0.9322 31 1 1.6039 1.9821 -0.8408 32 1 6.7029 4.5123 -0.5012 33 1 5.0533 5.1813 -0.4310 34 1 6.4176 5.8784 -2.4814 35 1 4.8448 5.1213 -2.8449 36 1 7.1987 2.1984 -6.4141 37 1 4.9850 2.5371 -3.6356 38 1 6.6354 1.8662 -3.7090 39 1 6.8468 1.9228 -1.2883 40 1 5.2740 1.1658 -1.6517 41 1 3.8077 -0.2430 1.1885 42 1 6.0838 1.7749 0.9451 43 1 6.1391 0.2172 1.8047 44 1 5.9746 0.2505 0.0327 45 1 2.7203 1.5067 2.5087 46 1 4.3115 1.1478 3.2212 47 1 4.0889 2.6103 2.2314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344697993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:13 Heat of formation + Delta-G solvation = -30.699015 kcal Electronic energy + Delta-G solvation = -24167.608250 eV Core-core repulsion = 20964.442925 eV Total energy + Delta-G solvation = -3203.165324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.25956 -37.27177 -36.21102 -34.05137 -33.56842 -31.37049 -30.20276 -29.35276 -27.22349 -26.85517 -24.68927 -23.39914 -22.75659 -21.86836 -20.84815 -19.57948 -17.95135 -17.13301 -16.07583 -15.86286 -15.47315 -15.12015 -14.77211 -14.08568 -13.85363 -13.63198 -13.54496 -13.39745 -13.21269 -13.14414 -12.89411 -12.49784 -12.06512 -11.90812 -11.87308 -11.64895 -11.44883 -11.29109 -11.11378 -10.92397 -10.86621 -10.74024 -10.65567 -10.50994 -10.43162 -10.29724 -10.19396 -9.92027 -9.84795 -9.08456 -8.58954 -8.17067 -6.66196 -5.85370 -3.35256 3.08168 3.33864 3.39403 3.39870 3.52128 4.42651 4.66534 4.74283 4.88716 5.04450 5.05866 5.17999 5.25877 5.31737 5.36290 5.54000 5.58127 5.64401 5.74107 5.76620 5.81339 5.85926 5.87765 5.91632 5.95802 5.96417 6.06400 6.07529 6.13619 6.19061 6.24163 6.29324 6.31261 6.39686 6.42393 6.48347 6.52008 6.81198 6.97538 7.25676 7.51376 7.70217 8.00719 8.38285 8.67111 9.13032 9.73554 10.32177 11.21528 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.004459 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.930793 B = 6278.421836 C = 6523.708813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.108 4.108 5 H 0.093 0.907 6 C 0.519 3.481 7 O -0.559 6.559 8 N -0.595 5.595 9 C 0.095 3.905 10 C 0.132 3.868 11 N -0.591 5.591 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.005 3.995 15 N -0.906 5.906 16 Si 0.907 3.093 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.156 3.844 21 C 0.078 3.922 22 C -0.080 4.080 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.256 0.744 37 H 0.022 0.978 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -6.740 12.032 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.129 4.129 5 H 0.111 0.889 6 C 0.308 3.692 7 O -0.439 6.439 8 N -0.326 5.326 9 C -0.029 4.029 10 C 0.005 3.995 11 N -0.314 5.314 12 C -0.385 4.385 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.550 5.550 16 Si 0.737 3.263 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.030 3.970 21 C -0.046 4.046 22 C -0.099 4.099 23 C -0.215 4.215 24 C -0.208 4.208 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.141 -6.347 12.134 15.444 hybrid contribution 0.931 0.031 -0.681 1.154 sum -6.209 -6.316 11.453 14.478 Atomic orbital electron populations 1.21762 0.95985 1.01278 1.01869 1.21579 0.95743 0.96855 1.02023 1.21485 0.92675 0.96595 1.03313 1.21508 0.96993 0.94153 1.00244 0.88898 1.20447 0.80057 0.90635 0.78088 1.90607 1.56940 1.48342 1.48021 1.48078 1.26548 1.10743 1.47278 1.22159 0.97866 0.83095 0.99788 1.21299 0.96119 0.92644 0.89465 1.43950 1.28897 1.03061 1.55500 1.19175 0.97765 1.19839 1.01688 0.91664 1.25173 0.97977 1.00302 0.95886 1.69930 1.32374 1.31578 1.21163 0.86306 0.83619 0.77704 0.78720 1.20913 1.21552 1.20829 1.21339 0.98267 0.88020 0.89400 1.22942 0.96221 0.89418 0.96049 1.21022 0.95724 0.99343 0.93821 1.22096 0.94966 1.02566 1.01833 1.21942 1.01306 1.01176 0.96417 0.92725 0.92964 0.92844 0.91944 0.91862 0.90656 0.91857 0.92225 0.90158 0.91707 0.95956 0.93408 0.96020 0.87918 0.91867 0.90785 0.90284 0.92135 0.92782 0.91976 0.92447 0.93168 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.25 5.54 -26.73 -0.15 -1.40 16 3 C -0.10 -1.30 4.01 -26.73 -0.11 -1.41 16 4 C -0.11 -1.47 1.65 -91.77 -0.15 -1.62 16 5 H 0.09 1.24 5.74 -51.93 -0.30 0.94 16 6 C 0.52 8.97 5.10 -10.99 -0.06 8.91 16 7 O -0.56 -11.08 14.48 5.56 0.08 -11.00 16 8 N -0.59 -10.73 2.39 -172.21 -0.41 -11.14 16 9 C 0.10 1.78 6.59 -3.59 -0.02 1.75 16 10 C 0.13 2.80 6.67 -3.60 -0.02 2.78 16 11 N -0.59 -14.45 2.96 -171.77 -0.51 -14.95 16 12 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 13 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 14 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 15 N -0.91 -25.33 10.98 55.49 0.61 -24.72 16 16 Si 0.91 21.04 29.57 -169.99 -5.03 16.02 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C 0.16 3.55 5.49 -3.37 -0.02 3.53 16 21 C 0.08 1.38 4.43 -3.37 -0.01 1.37 16 22 C -0.08 -0.94 2.51 -90.62 -0.23 -1.16 16 23 C -0.16 -1.88 7.59 37.16 0.28 -1.60 16 24 C -0.15 -1.83 8.46 37.16 0.31 -1.51 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.58 6.77 -51.93 -0.35 0.23 16 30 H 0.07 1.00 6.22 -51.93 -0.32 0.68 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 34 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 39 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 40 H 0.07 1.13 4.37 -51.93 -0.23 0.90 16 41 H 0.08 0.79 6.60 -51.93 -0.34 0.45 16 42 H 0.06 0.85 6.59 -51.93 -0.34 0.50 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 45 H 0.06 0.66 6.65 -51.93 -0.35 0.31 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.96 6.26 -51.93 -0.33 0.63 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -29.35 346.44 -8.24 -37.59 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.17 Total: 1.24 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.04 Total: 1.75 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.31 Total: -50.82 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.35 -8.24 -37.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344697993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.892 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds