Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46586 * 2 1 4 4 C 1.53003 * 109.46816 * 185.10452 * 3 2 1 5 5 H 1.09004 * 109.47167 * 55.86491 * 4 3 2 6 6 C 1.50702 * 109.47265 * 175.86550 * 4 3 2 7 7 O 1.21281 * 119.99371 * 31.11870 * 6 4 3 8 8 N 1.34769 * 120.00009 * 211.11650 * 6 4 3 9 9 C 1.46970 * 120.59295 * 184.54587 * 8 6 4 10 10 C 1.53373 * 108.63313 * 235.20472 * 9 8 6 11 11 N 1.46964 * 108.63633 * 310.57183 * 10 9 8 12 12 C 1.36931 * 120.59812 * 235.20488 * 11 10 9 13 13 H 1.08011 * 119.99524 * 31.22182 * 12 11 10 14 14 C 1.38811 * 120.00232 * 211.49740 * 12 11 10 15 15 N 1.31613 * 119.99589 * 10.34332 * 14 12 11 16 16 Si 1.86803 * 119.99960 * 190.34312 * 14 12 11 17 17 H 1.48496 * 109.47160 * 60.00044 * 16 14 12 18 18 H 1.48496 * 109.46838 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47073 * 299.99958 * 16 14 12 20 20 C 1.46967 * 118.80830 * 55.47921 * 11 10 9 21 21 C 1.46964 * 120.59801 * 4.52190 * 8 6 4 22 22 C 1.53004 * 109.47165 * 295.87148 * 4 3 2 23 23 C 1.52995 * 109.47057 * 178.82801 * 22 4 3 24 24 C 1.53001 * 109.46544 * 298.82751 * 22 4 3 25 25 H 1.09001 * 109.46916 * 60.00450 * 1 2 3 26 26 H 1.08997 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47449 * 300.00379 * 1 2 3 28 28 H 1.08995 * 109.46880 * 240.00115 * 2 1 3 29 29 H 1.08992 * 109.46876 * 119.99774 * 2 1 3 30 30 H 1.08999 * 109.47218 * 65.10468 * 3 2 1 31 31 H 1.09004 * 109.47361 * 305.09974 * 3 2 1 32 32 H 1.09002 * 109.61012 * 115.45804 * 9 8 6 33 33 H 1.09005 * 109.74956 * 355.03385 * 9 8 6 34 34 H 1.08998 * 109.60711 * 190.83222 * 10 9 8 35 35 H 1.08997 * 109.61102 * 70.31915 * 10 9 8 36 36 H 0.97011 * 119.99747 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.61116 * 64.26644 * 20 11 10 38 38 H 1.08998 * 109.60997 * 184.77490 * 20 11 10 39 39 H 1.08997 * 109.61097 * 244.54108 * 21 8 6 40 40 H 1.08997 * 109.60529 * 5.04836 * 21 8 6 41 41 H 1.08995 * 109.47185 * 58.82365 * 22 4 3 42 42 H 1.09004 * 109.47126 * 63.89168 * 23 22 4 43 43 H 1.09004 * 109.47062 * 183.88745 * 23 22 4 44 44 H 1.08998 * 109.47250 * 303.88793 * 23 22 4 45 45 H 1.08999 * 109.47667 * 65.23224 * 24 22 4 46 46 H 1.09007 * 109.46644 * 185.23226 * 24 22 4 47 47 H 1.08999 * 109.47412 * 305.23124 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4445 -0.1283 5 1 3.8546 0.8938 -1.0232 6 6 4.0583 2.8647 -0.2305 7 8 3.4561 3.7575 0.3273 8 7 5.1689 3.1425 -0.9416 9 6 5.7183 4.5054 -0.9687 10 6 5.8390 4.9561 -2.4297 11 7 6.5227 3.9016 -3.1916 12 6 7.6511 4.1839 -3.9141 13 1 8.3270 4.9572 -3.5798 14 6 7.9234 3.4802 -5.0793 15 7 7.0083 2.6905 -5.6000 16 14 9.5885 3.6541 -5.9079 17 1 10.6556 3.2219 -4.9702 18 1 9.6260 2.8058 -7.1262 19 1 9.8071 5.0733 -6.2866 20 6 5.9701 2.5400 -3.1690 21 6 5.8526 2.0880 -1.7035 22 6 4.1809 0.7775 1.1030 23 6 5.7041 0.7533 0.9611 24 6 3.7978 1.5674 2.3561 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7531 1.9293 0.9322 31 1 1.6039 1.9821 -0.8408 32 1 6.7029 4.5123 -0.5012 33 1 5.0533 5.1813 -0.4310 34 1 6.4176 5.8784 -2.4814 35 1 4.8448 5.1213 -2.8449 36 1 7.1987 2.1984 -6.4141 37 1 4.9850 2.5371 -3.6356 38 1 6.6354 1.8662 -3.7090 39 1 6.8468 1.9228 -1.2883 40 1 5.2740 1.1658 -1.6517 41 1 3.8077 -0.2430 1.1885 42 1 6.0838 1.7749 0.9451 43 1 6.1391 0.2172 1.8047 44 1 5.9746 0.2505 0.0327 45 1 2.7203 1.5067 2.5087 46 1 4.3115 1.1478 3.2212 47 1 4.0889 2.6103 2.2314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344697993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -46.108568 kcal Electronic energy + Delta-G solvation = -24168.276458 eV Core-core repulsion = 20964.442925 eV Total energy + Delta-G solvation = -3203.833533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.60080 -38.76890 -37.52682 -35.64516 -34.61547 -33.18402 -31.89693 -30.39013 -28.73176 -28.04814 -26.03676 -24.98024 -24.31236 -22.85486 -22.25323 -20.96555 -19.46792 -18.56023 -17.77241 -17.16649 -16.78614 -16.60921 -16.11363 -15.48680 -15.47056 -15.10649 -14.92626 -14.75014 -14.60220 -14.40705 -13.88331 -13.81458 -13.37605 -13.12669 -13.05651 -12.90086 -12.80637 -12.67926 -12.45601 -12.38768 -12.22160 -12.03133 -12.00786 -11.94494 -11.79219 -11.69059 -11.60731 -11.40849 -11.12508 -10.62970 -10.42304 -9.75897 -8.61111 -7.87501 -5.41837 1.49855 1.50449 1.57732 1.70944 2.10174 2.50907 3.27772 3.51815 3.57359 3.74287 3.86142 4.05498 4.20029 4.23714 4.27544 4.33636 4.37599 4.39104 4.52802 4.61977 4.64134 4.70594 4.72004 4.79585 4.81363 4.84944 4.91027 5.00484 5.03557 5.05577 5.08556 5.14154 5.21964 5.24748 5.30135 5.40814 5.43380 5.47411 5.55755 5.58834 5.60830 5.69242 6.37718 6.56864 7.11995 7.25949 7.77551 8.32639 9.16472 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.004459 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.930793 B = 6278.421836 C = 6523.708813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.099 0.901 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.600 5.600 9 C 0.105 3.895 10 C 0.133 3.867 11 N -0.608 5.608 12 C -0.269 4.269 13 H 0.067 0.933 14 C -0.042 4.042 15 N -0.935 5.935 16 Si 0.971 3.029 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.161 3.839 21 C 0.098 3.902 22 C -0.075 4.075 23 C -0.157 4.157 24 C -0.148 4.148 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.005 0.995 36 H 0.253 0.747 37 H -0.005 1.005 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -8.410 13.384 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.125 4.125 5 H 0.117 0.883 6 C 0.307 3.693 7 O -0.468 6.468 8 N -0.332 5.332 9 C -0.019 4.019 10 C 0.006 3.994 11 N -0.332 5.332 12 C -0.398 4.398 13 H 0.085 0.915 14 C -0.238 4.238 15 N -0.580 5.580 16 Si 0.799 3.201 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.205 1.205 20 C 0.035 3.965 21 C -0.026 4.026 22 C -0.093 4.093 23 C -0.214 4.214 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.822 -8.014 13.512 17.127 hybrid contribution 0.769 0.623 -1.088 1.471 sum -6.053 -7.391 12.423 15.672 Atomic orbital electron populations 1.21769 0.95450 1.02189 1.01564 1.21554 0.96209 0.94800 1.03040 1.21458 0.91878 0.98357 1.01995 1.21595 0.97693 0.91545 1.01660 0.88311 1.21153 0.79077 0.92065 0.76969 1.90591 1.57505 1.49669 1.49001 1.48148 1.27035 1.10396 1.47613 1.21948 0.98468 0.83835 0.97664 1.21344 0.94910 0.92474 0.90646 1.44208 1.28859 1.04349 1.55750 1.19494 0.98512 1.19787 1.02053 0.91497 1.25889 1.01162 1.00258 0.96503 1.70094 1.34066 1.32437 1.21402 0.85294 0.79838 0.77461 0.77504 1.20001 1.21910 1.20535 1.21182 0.95952 0.87140 0.92211 1.22696 0.97271 0.90163 0.92477 1.21070 0.95560 1.00391 0.92309 1.22089 0.95011 1.01361 1.02942 1.21900 1.01820 0.99377 0.97393 0.93547 0.91421 0.92743 0.91475 0.90174 0.91461 0.93893 0.91372 0.89961 0.91115 0.97726 0.93824 0.98697 0.90265 0.91233 0.87792 0.87347 0.94523 0.90924 0.91547 0.91980 0.91370 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.12 -2.06 5.54 30.60 0.17 -1.89 16 3 C -0.10 -2.37 4.01 30.60 0.12 -2.24 16 4 C -0.10 -2.64 1.65 -11.54 -0.02 -2.66 16 5 H 0.10 2.40 5.74 -2.39 -0.01 2.39 16 6 C 0.52 17.58 5.10 87.66 0.45 18.02 16 7 O -0.59 -23.30 14.48 -3.03 -0.04 -23.34 16 8 N -0.60 -21.41 2.39 -817.15 -1.96 -23.37 16 9 C 0.11 3.93 6.59 86.41 0.57 4.50 16 10 C 0.13 5.74 6.67 86.42 0.58 6.32 16 11 N -0.61 -30.16 2.96 -697.34 -2.06 -32.22 16 12 C -0.27 -14.38 9.58 84.03 0.81 -13.57 16 13 H 0.07 3.49 7.85 -2.91 -0.02 3.46 16 14 C -0.04 -2.28 5.06 84.86 0.43 -1.85 16 15 N -0.93 -53.15 10.98 21.65 0.24 -52.91 16 16 Si 0.97 43.32 29.57 68.60 2.03 45.35 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.16 7.45 5.49 86.56 0.48 7.92 16 21 C 0.10 3.39 4.43 86.56 0.38 3.78 16 22 C -0.07 -1.52 2.51 -10.79 -0.03 -1.55 16 23 C -0.16 -3.30 7.59 71.98 0.55 -2.75 16 24 C -0.15 -3.25 8.46 71.98 0.61 -2.64 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.15 6.77 -2.39 -0.02 1.13 16 30 H 0.07 1.72 6.22 -2.39 -0.01 1.70 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 3.05 7.00 -2.38 -0.02 3.03 16 34 H 0.07 2.91 7.93 -2.39 -0.02 2.89 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 37 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.08 4.04 5.98 -2.39 -0.01 4.03 16 39 H 0.07 2.37 7.87 -2.39 -0.02 2.35 16 40 H 0.10 2.98 4.37 -2.39 -0.01 2.97 16 41 H 0.11 1.67 6.60 -2.39 -0.02 1.65 16 42 H 0.04 0.95 6.59 -2.38 -0.02 0.93 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.33 6.57 -2.39 -0.02 1.32 16 45 H 0.06 1.29 6.65 -2.39 -0.02 1.27 16 46 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.03 0.94 6.26 -2.39 -0.01 0.93 16 Total: -1.00 -64.02 346.44 4.94 -59.08 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.93 Total: 17.80 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.80 Total: 9.61 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.78 Total: -108.50 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.02 4.94 -59.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344697993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.971 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds