Wall clock time and date at job start Tue Mar 31 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 C 1.53006 * 109.46866 * 174.94632 * 3 2 1 5 5 H 1.08994 * 109.47172 * 307.23451 * 4 3 2 6 6 C 1.50706 * 109.46944 * 187.23187 * 4 3 2 7 7 O 1.21283 * 119.99897 * 321.21722 * 6 4 3 8 8 N 1.34768 * 119.99592 * 141.21518 * 6 4 3 9 9 C 1.46973 * 120.59809 * 4.84265 * 8 6 4 10 10 C 1.53809 * 108.39888 * 124.75718 * 9 8 6 11 11 N 1.46972 * 108.57995 * 49.63736 * 10 9 8 12 12 C 1.36934 * 120.59151 * 124.61932 * 11 10 9 13 13 H 1.07995 * 120.00004 * 192.21813 * 12 11 10 14 14 C 1.38821 * 119.99971 * 12.22822 * 12 11 10 15 15 N 1.31619 * 119.99614 * 222.20198 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 42.20070 * 14 12 11 17 17 H 1.48497 * 109.47067 * 95.46734 * 16 14 12 18 18 H 1.48502 * 109.47032 * 215.47353 * 16 14 12 19 19 H 1.48504 * 109.47054 * 335.47055 * 16 14 12 20 20 C 1.46961 * 118.80974 * 304.65098 * 11 10 9 21 21 C 1.46969 * 120.59216 * 185.12405 * 8 6 4 22 22 C 1.52998 * 109.46752 * 67.23681 * 4 3 2 23 23 C 1.53001 * 109.47263 * 63.06538 * 22 4 3 24 24 C 1.53005 * 109.46771 * 183.06556 * 22 4 3 25 25 H 1.08996 * 109.47254 * 299.99599 * 1 2 3 26 26 H 1.08998 * 109.47082 * 59.99859 * 1 2 3 27 27 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47137 * 120.00694 * 2 1 3 29 29 H 1.09004 * 109.47171 * 240.00102 * 2 1 3 30 30 H 1.08997 * 109.47345 * 294.94485 * 3 2 1 31 31 H 1.09002 * 109.47243 * 54.95413 * 3 2 1 32 32 H 1.09001 * 109.60567 * 244.53894 * 9 8 6 33 33 H 1.08998 * 109.60402 * 5.05155 * 9 8 6 34 34 H 1.08996 * 109.74273 * 289.85203 * 10 9 8 35 35 H 1.08994 * 109.53350 * 169.30668 * 10 9 8 36 36 H 0.96991 * 119.99964 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.60608 * 295.47185 * 20 11 10 38 38 H 1.09003 * 109.60662 * 174.96829 * 20 11 10 39 39 H 1.09000 * 109.61130 * 354.94398 * 21 8 6 40 40 H 1.08998 * 109.61102 * 115.46398 * 21 8 6 41 41 H 1.08994 * 109.47462 * 303.06328 * 22 4 3 42 42 H 1.09000 * 109.46796 * 63.60509 * 23 22 4 43 43 H 1.09007 * 109.46874 * 183.59874 * 23 22 4 44 44 H 1.08998 * 109.47109 * 303.60107 * 23 22 4 45 45 H 1.08991 * 109.47273 * 63.11070 * 24 22 4 46 46 H 1.09007 * 109.47019 * 183.10918 * 24 22 4 47 47 H 1.08998 * 109.46842 * 303.10583 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1271 5 1 3.8581 0.8472 0.9905 6 6 4.0523 2.8591 0.3056 7 8 3.5309 3.7627 -0.3130 8 7 5.0675 3.1201 1.1526 9 6 5.7783 2.0254 1.8283 10 6 7.2794 2.1585 1.5207 11 7 7.6916 3.5433 1.7900 12 6 8.7225 3.8086 2.6514 13 1 8.8918 4.8179 2.9963 14 6 9.5500 2.7802 3.0812 15 7 9.9206 2.7173 4.3426 16 14 10.1375 1.4857 1.8694 17 1 11.4794 1.8609 1.3561 18 1 10.2187 0.1693 2.5520 19 1 9.1811 1.3977 0.7367 20 6 6.9771 4.6382 1.1187 21 6 5.4796 4.5049 1.4220 22 6 4.1827 0.8479 -1.1392 23 6 3.8341 1.7290 -2.3405 24 6 5.7030 0.7792 -0.9811 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.7525 1.9295 -0.9318 31 1 1.6047 1.9818 0.8413 32 1 5.6151 2.0923 2.9039 33 1 5.4111 1.0680 1.4588 34 1 7.4633 1.9193 0.4734 35 1 7.8438 1.4783 2.1584 36 1 10.4984 1.9986 4.6430 37 1 7.1396 4.5754 0.0427 38 1 7.3419 5.5955 1.4911 39 1 4.9153 5.1852 0.7842 40 1 5.2958 4.7441 2.4694 41 1 3.7882 -0.1556 -1.2981 42 1 4.2830 2.7138 -2.2111 43 1 4.2198 1.2707 -3.2512 44 1 2.7514 1.8301 -2.4149 45 1 5.9529 0.1077 -0.1598 46 1 6.1477 0.4060 -1.9037 47 1 6.0914 1.7750 -0.7674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344697995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:19 Heat of formation + Delta-G solvation = -13.639841 kcal Electronic energy + Delta-G solvation = -24446.681876 eV Core-core repulsion = 21244.256293 eV Total energy + Delta-G solvation = -3202.425583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41914 -37.48653 -36.38705 -34.07269 -33.75839 -31.65041 -30.72601 -29.53070 -27.20566 -27.08094 -24.78177 -23.33204 -23.22219 -21.98839 -21.17734 -19.57192 -18.15329 -17.22143 -16.48397 -15.70891 -15.55450 -15.37994 -14.82442 -14.35115 -14.07489 -13.92843 -13.73107 -13.64121 -13.42617 -13.01203 -12.73639 -12.50396 -12.17195 -12.14166 -12.01353 -11.96232 -11.82754 -11.50242 -11.19658 -11.12636 -11.01781 -10.84256 -10.73891 -10.50690 -10.44523 -10.30284 -10.24453 -10.12557 -9.36388 -9.18890 -8.75350 -8.15825 -7.19056 -6.11210 -3.17604 2.94457 3.30495 3.37347 3.45919 3.53197 4.49297 4.56516 4.62330 4.79001 4.81303 4.97859 5.01139 5.07944 5.18525 5.25978 5.41749 5.50833 5.55656 5.62535 5.63893 5.67585 5.73788 5.75571 5.77436 5.82760 5.90468 5.92257 6.02824 6.05565 6.08990 6.11009 6.13084 6.19111 6.22410 6.27961 6.38989 6.46661 6.49779 6.57571 6.76777 6.96060 7.78104 7.83150 8.16652 8.53009 8.83480 9.66302 10.02709 11.00853 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.005141 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.802102 B = 5444.646669 C = 5736.712017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.108 4.108 5 H 0.090 0.910 6 C 0.520 3.480 7 O -0.553 6.553 8 N -0.598 5.598 9 C 0.079 3.921 10 C 0.132 3.868 11 N -0.600 5.600 12 C -0.276 4.276 13 H 0.088 0.912 14 C 0.036 3.964 15 N -0.870 5.870 16 Si 0.820 3.180 17 H -0.296 1.296 18 H -0.293 1.293 19 H -0.256 1.256 20 C 0.138 3.862 21 C 0.094 3.906 22 C -0.081 4.081 23 C -0.149 4.149 24 C -0.163 4.163 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.262 0.738 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -6.053 -8.827 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.129 4.129 5 H 0.108 0.892 6 C 0.308 3.692 7 O -0.432 6.432 8 N -0.331 5.331 9 C -0.045 4.045 10 C 0.006 3.994 11 N -0.323 5.323 12 C -0.402 4.402 13 H 0.106 0.894 14 C -0.165 4.165 15 N -0.510 5.510 16 Si 0.646 3.354 17 H -0.224 1.224 18 H -0.220 1.220 19 H -0.181 1.181 20 C 0.011 3.989 21 C -0.030 4.030 22 C -0.100 4.100 23 C -0.206 4.206 24 C -0.220 4.220 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.910 -5.604 -8.970 18.281 hybrid contribution 0.798 -0.865 -0.449 1.260 sum -14.112 -6.470 -9.419 18.158 Atomic orbital electron populations 1.21760 0.95912 1.01367 1.01857 1.21578 0.95774 0.96737 1.02113 1.21514 0.92523 0.96776 1.03303 1.21512 0.97029 0.94263 1.00104 0.89177 1.20484 0.79223 0.90800 0.78668 1.90618 1.58156 1.47523 1.46944 1.48075 1.32876 1.08055 1.44052 1.22761 0.95178 0.89035 0.97554 1.21870 0.91042 0.87859 0.98677 1.44323 1.36435 0.99812 1.51732 1.18804 1.07026 0.96399 1.18001 0.89419 1.24847 0.99836 0.96322 0.95544 1.70246 1.35187 1.32631 1.12887 0.87987 0.80519 0.81719 0.85138 1.22390 1.21993 1.18088 1.21257 0.89774 0.92590 0.95299 1.22197 0.97482 0.82285 1.01003 1.21039 0.95831 0.99394 0.93744 1.21935 1.01799 1.00390 0.96518 1.22224 0.94876 1.03095 1.01852 0.92780 0.92776 0.92897 0.91998 0.91747 0.90470 0.91952 0.91097 0.90158 0.94398 0.90845 0.92821 0.95648 0.90857 0.89742 0.91553 0.90280 0.91730 0.93213 0.92270 0.92221 0.92506 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.12 5.61 -26.73 -0.15 -1.27 16 3 C -0.10 -1.17 4.15 -26.73 -0.11 -1.28 16 4 C -0.11 -1.36 1.58 -91.77 -0.15 -1.51 16 5 H 0.09 1.07 5.90 -51.93 -0.31 0.76 16 6 C 0.52 8.39 5.06 -10.99 -0.06 8.34 16 7 O -0.55 -10.27 14.33 5.56 0.08 -10.19 16 8 N -0.60 -10.18 2.64 -172.21 -0.45 -10.63 16 9 C 0.08 1.34 5.35 -3.36 -0.02 1.32 16 10 C 0.13 2.71 4.29 -3.36 -0.01 2.70 16 11 N -0.60 -13.71 2.90 -171.77 -0.50 -14.21 16 12 C -0.28 -7.39 9.94 -15.06 -0.15 -7.54 16 13 H 0.09 2.48 7.95 -52.49 -0.42 2.06 16 14 C 0.04 0.98 4.90 -17.43 -0.09 0.89 16 15 N -0.87 -25.43 13.97 55.49 0.78 -24.66 16 16 Si 0.82 20.11 26.06 -169.99 -4.43 15.68 16 17 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.26 -5.88 4.85 56.52 0.27 -5.61 16 20 C 0.14 2.69 6.67 -3.60 -0.02 2.66 16 21 C 0.09 1.66 6.60 -3.60 -0.02 1.64 16 22 C -0.08 -0.95 2.57 -90.62 -0.23 -1.19 16 23 C -0.15 -1.85 8.34 37.16 0.31 -1.54 16 24 C -0.16 -2.13 7.18 37.16 0.27 -1.86 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 6.81 -51.93 -0.35 0.19 16 30 H 0.08 0.93 6.05 -51.93 -0.31 0.62 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.13 3.69 -51.93 -0.19 0.94 16 34 H 0.04 0.78 4.89 -51.93 -0.25 0.52 16 35 H 0.07 1.63 4.35 -51.93 -0.23 1.41 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.38 7.86 -51.93 -0.41 0.98 16 39 H 0.08 1.45 6.99 -51.93 -0.36 1.08 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 0.79 6.62 -51.93 -0.34 0.44 16 42 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.70 6.19 -51.93 -0.32 0.38 16 45 H 0.06 0.74 7.05 -51.93 -0.37 0.37 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 1.06 4.77 -51.93 -0.25 0.81 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -29.96 336.48 -7.46 -37.43 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.94 Total: 1.01 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.07 Total: 0.50 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.18 Total: -49.50 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.43 Total: 15.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.96 -7.46 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344697995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.786 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds