Wall clock time and date at job start Tue Mar 31 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 C 1.53006 * 109.46866 * 174.94632 * 3 2 1 5 5 H 1.08994 * 109.47172 * 307.23451 * 4 3 2 6 6 C 1.50706 * 109.46944 * 187.23187 * 4 3 2 7 7 O 1.21283 * 119.99897 * 321.21722 * 6 4 3 8 8 N 1.34768 * 119.99592 * 141.21518 * 6 4 3 9 9 C 1.46973 * 120.59809 * 4.84265 * 8 6 4 10 10 C 1.53809 * 108.39888 * 124.75718 * 9 8 6 11 11 N 1.46972 * 108.57995 * 49.63736 * 10 9 8 12 12 C 1.36934 * 120.59151 * 124.61932 * 11 10 9 13 13 H 1.07995 * 120.00004 * 192.21813 * 12 11 10 14 14 C 1.38821 * 119.99971 * 12.22822 * 12 11 10 15 15 N 1.31619 * 119.99614 * 222.20198 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 42.20070 * 14 12 11 17 17 H 1.48497 * 109.47067 * 95.46734 * 16 14 12 18 18 H 1.48502 * 109.47032 * 215.47353 * 16 14 12 19 19 H 1.48504 * 109.47054 * 335.47055 * 16 14 12 20 20 C 1.46961 * 118.80974 * 304.65098 * 11 10 9 21 21 C 1.46969 * 120.59216 * 185.12405 * 8 6 4 22 22 C 1.52998 * 109.46752 * 67.23681 * 4 3 2 23 23 C 1.53001 * 109.47263 * 63.06538 * 22 4 3 24 24 C 1.53005 * 109.46771 * 183.06556 * 22 4 3 25 25 H 1.08996 * 109.47254 * 299.99599 * 1 2 3 26 26 H 1.08998 * 109.47082 * 59.99859 * 1 2 3 27 27 H 1.08995 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47137 * 120.00694 * 2 1 3 29 29 H 1.09004 * 109.47171 * 240.00102 * 2 1 3 30 30 H 1.08997 * 109.47345 * 294.94485 * 3 2 1 31 31 H 1.09002 * 109.47243 * 54.95413 * 3 2 1 32 32 H 1.09001 * 109.60567 * 244.53894 * 9 8 6 33 33 H 1.08998 * 109.60402 * 5.05155 * 9 8 6 34 34 H 1.08996 * 109.74273 * 289.85203 * 10 9 8 35 35 H 1.08994 * 109.53350 * 169.30668 * 10 9 8 36 36 H 0.96991 * 119.99964 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.60608 * 295.47185 * 20 11 10 38 38 H 1.09003 * 109.60662 * 174.96829 * 20 11 10 39 39 H 1.09000 * 109.61130 * 354.94398 * 21 8 6 40 40 H 1.08998 * 109.61102 * 115.46398 * 21 8 6 41 41 H 1.08994 * 109.47462 * 303.06328 * 22 4 3 42 42 H 1.09000 * 109.46796 * 63.60509 * 23 22 4 43 43 H 1.09007 * 109.46874 * 183.59874 * 23 22 4 44 44 H 1.08998 * 109.47109 * 303.60107 * 23 22 4 45 45 H 1.08991 * 109.47273 * 63.11070 * 24 22 4 46 46 H 1.09007 * 109.47019 * 183.10918 * 24 22 4 47 47 H 1.08998 * 109.46842 * 303.10583 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1271 5 1 3.8581 0.8472 0.9905 6 6 4.0523 2.8591 0.3056 7 8 3.5309 3.7627 -0.3130 8 7 5.0675 3.1201 1.1526 9 6 5.7783 2.0254 1.8283 10 6 7.2794 2.1585 1.5207 11 7 7.6916 3.5433 1.7900 12 6 8.7225 3.8086 2.6514 13 1 8.8918 4.8179 2.9963 14 6 9.5500 2.7802 3.0812 15 7 9.9206 2.7173 4.3426 16 14 10.1375 1.4857 1.8694 17 1 11.4794 1.8609 1.3561 18 1 10.2187 0.1693 2.5520 19 1 9.1811 1.3977 0.7367 20 6 6.9771 4.6382 1.1187 21 6 5.4796 4.5049 1.4220 22 6 4.1827 0.8479 -1.1392 23 6 3.8341 1.7290 -2.3405 24 6 5.7030 0.7792 -0.9811 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.7525 1.9295 -0.9318 31 1 1.6047 1.9818 0.8413 32 1 5.6151 2.0923 2.9039 33 1 5.4111 1.0680 1.4588 34 1 7.4633 1.9193 0.4734 35 1 7.8438 1.4783 2.1584 36 1 10.4984 1.9986 4.6430 37 1 7.1396 4.5754 0.0427 38 1 7.3419 5.5955 1.4911 39 1 4.9153 5.1852 0.7842 40 1 5.2958 4.7441 2.4694 41 1 3.7882 -0.1556 -1.2981 42 1 4.2830 2.7138 -2.2111 43 1 4.2198 1.2707 -3.2512 44 1 2.7514 1.8301 -2.4149 45 1 5.9529 0.1077 -0.1598 46 1 6.1477 0.4060 -1.9037 47 1 6.0914 1.7750 -0.7674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344697995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:18 Heat of formation + Delta-G solvation = -31.009582 kcal Electronic energy + Delta-G solvation = -24447.435084 eV Core-core repulsion = 21244.256293 eV Total energy + Delta-G solvation = -3203.178791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67492 -38.92450 -37.57647 -35.64877 -34.67918 -33.53508 -32.28383 -30.49981 -28.78676 -28.10236 -26.03387 -24.93007 -24.63271 -23.05269 -22.33919 -20.87804 -19.54882 -18.65585 -18.06643 -17.05537 -16.91158 -16.58783 -16.17760 -16.01811 -15.48203 -15.20531 -14.86266 -14.80890 -14.57521 -14.40856 -14.14979 -13.86138 -13.84948 -13.55038 -13.09769 -12.85532 -12.81589 -12.76349 -12.54945 -12.42066 -12.17922 -12.13239 -12.04503 -11.83810 -11.80878 -11.63586 -11.42922 -11.23121 -11.14443 -10.65924 -10.45281 -9.83458 -9.02087 -8.21173 -5.25278 1.34679 1.49793 1.53385 1.67965 2.03316 2.44967 2.88056 3.36965 3.47626 3.70645 3.85724 4.00227 4.10517 4.17947 4.21918 4.29728 4.34023 4.36146 4.39960 4.54194 4.58631 4.62944 4.65569 4.70855 4.77485 4.83872 4.83965 4.90315 4.94720 4.98157 5.03855 5.08560 5.12587 5.15449 5.22580 5.29790 5.40104 5.44763 5.46512 5.53848 5.59671 5.79357 6.05630 6.51750 6.85693 7.23045 7.64489 8.03127 8.93726 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.005141 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.802102 B = 5444.646669 C = 5736.712017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.104 0.896 6 C 0.519 3.481 7 O -0.579 6.579 8 N -0.604 5.604 9 C 0.091 3.909 10 C 0.127 3.873 11 N -0.612 5.612 12 C -0.270 4.270 13 H 0.058 0.942 14 C -0.014 4.014 15 N -0.918 5.918 16 Si 0.884 3.116 17 H -0.311 1.311 18 H -0.291 1.291 19 H -0.230 1.230 20 C 0.138 3.862 21 C 0.103 3.897 22 C -0.076 4.076 23 C -0.146 4.146 24 C -0.165 4.165 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.262 0.738 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 -8.497 -10.461 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.125 4.125 5 H 0.122 0.878 6 C 0.309 3.691 7 O -0.459 6.459 8 N -0.336 5.336 9 C -0.033 4.033 10 C 0.002 3.998 11 N -0.336 5.336 12 C -0.398 4.398 13 H 0.076 0.924 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.711 3.289 17 H -0.240 1.240 18 H -0.218 1.218 19 H -0.154 1.154 20 C 0.012 3.988 21 C -0.022 4.022 22 C -0.094 4.094 23 C -0.203 4.203 24 C -0.222 4.222 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.603 -8.063 -10.646 21.308 hybrid contribution 1.263 0.019 0.037 1.264 sum -15.340 -8.044 -10.610 20.312 Atomic orbital electron populations 1.21766 0.95442 1.02127 1.01652 1.21556 0.96179 0.94897 1.03046 1.21483 0.91430 0.98417 1.02320 1.21605 0.97915 0.91726 1.01267 0.87769 1.21165 0.78328 0.92169 0.77424 1.90608 1.58825 1.48835 1.47678 1.48141 1.33389 1.07570 1.44469 1.22599 0.92739 0.90573 0.97358 1.21944 0.93256 0.86079 0.98550 1.44419 1.35763 1.01698 1.51757 1.18765 1.08007 0.95152 1.17854 0.92407 1.25336 1.00470 0.98907 0.96463 1.70308 1.36957 1.34337 1.14527 0.86968 0.79299 0.79149 0.83437 1.24049 1.21764 1.15377 1.21327 0.90693 0.91730 0.95012 1.21985 0.95943 0.83376 1.00872 1.21075 0.95089 1.00596 0.92664 1.21893 1.01854 0.98917 0.97653 1.22228 0.95621 1.01527 1.02834 0.93190 0.92890 0.91648 0.91201 0.90582 0.91457 0.93063 0.91760 0.86664 0.93585 0.92417 0.92885 0.95362 0.91016 0.89260 0.91886 0.87198 0.94954 0.91711 0.91890 0.91237 0.91449 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.70 5.61 30.59 0.17 -1.53 16 3 C -0.10 -1.97 4.15 30.60 0.13 -1.84 16 4 C -0.10 -2.31 1.58 -11.54 -0.02 -2.33 16 5 H 0.10 2.03 5.90 -2.39 -0.01 2.02 16 6 C 0.52 15.87 5.06 87.66 0.44 16.32 16 7 O -0.58 -20.99 14.33 -3.04 -0.04 -21.03 16 8 N -0.60 -19.65 2.64 -817.14 -2.16 -21.81 16 9 C 0.09 2.89 5.35 86.56 0.46 3.36 16 10 C 0.13 5.01 4.29 86.56 0.37 5.38 16 11 N -0.61 -27.84 2.90 -697.34 -2.02 -29.86 16 12 C -0.27 -14.70 9.94 84.04 0.84 -13.86 16 13 H 0.06 3.41 7.95 -2.91 -0.02 3.39 16 14 C -0.01 -0.77 4.90 84.86 0.42 -0.36 16 15 N -0.92 -54.95 13.97 21.65 0.30 -54.65 16 16 Si 0.88 41.87 26.06 68.60 1.79 43.66 16 17 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.23 -9.81 4.85 99.48 0.48 -9.33 16 20 C 0.14 5.39 6.67 86.42 0.58 5.97 16 21 C 0.10 3.56 6.60 86.41 0.57 4.13 16 22 C -0.08 -1.50 2.57 -10.79 -0.03 -1.53 16 23 C -0.15 -3.25 8.34 71.98 0.60 -2.65 16 24 C -0.16 -3.72 7.18 71.98 0.52 -3.20 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.93 6.81 -2.38 -0.02 0.92 16 30 H 0.07 1.49 6.05 -2.39 -0.01 1.47 16 31 H 0.05 1.13 8.13 -2.39 -0.02 1.12 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.12 2.82 3.69 -2.39 -0.01 2.81 16 34 H 0.05 1.77 4.89 -2.39 -0.01 1.75 16 35 H 0.06 2.46 4.35 -2.39 -0.01 2.45 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 2.76 7.86 -2.39 -0.02 2.74 16 39 H 0.09 3.03 6.99 -2.39 -0.02 3.01 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.11 1.60 6.62 -2.39 -0.02 1.58 16 42 H 0.03 0.92 6.51 -2.39 -0.02 0.91 16 43 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.06 1.34 6.19 -2.39 -0.01 1.32 16 45 H 0.07 1.41 7.05 -2.39 -0.02 1.39 16 46 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.04 1.10 4.77 -2.39 -0.01 1.09 16 Total: -1.00 -65.43 336.48 4.35 -61.08 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.72 Total: 16.08 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.76 Total: 6.53 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.87 Total: -106.32 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.04 Total: -21.03 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.79 Total: 43.66 kcal Total: -65.43 4.35 -61.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344697995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.067 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds