Wall clock time and date at job start Tue Mar 31 2020 05:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00261 * 2 1 4 4 O 1.21585 * 119.99975 * 179.97438 * 3 2 1 5 5 N 1.34771 * 119.99862 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47522 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46922 * 299.99681 * 7 6 5 9 9 C 1.52998 * 109.47193 * 59.99455 * 7 6 5 10 10 C 1.53003 * 109.47398 * 179.97438 * 7 6 5 11 11 C 1.50696 * 109.47174 * 179.97438 * 10 7 6 12 12 H 1.07999 * 120.00419 * 359.97438 * 11 10 7 13 13 C 1.37877 * 119.99758 * 180.02562 * 11 10 7 14 14 N 1.31522 * 119.99945 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00165 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47191 * 90.00193 * 15 13 11 17 17 H 1.48508 * 109.47261 * 210.00006 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00023 * 15 13 11 19 19 C 1.46500 * 119.99716 * 179.97438 * 2 1 3 20 20 C 1.54961 * 110.92632 * 306.54194 * 19 2 1 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 2 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47349 * 270.00323 * 1 2 3 25 25 H 1.09003 * 109.47237 * 29.99893 * 1 2 3 26 26 H 1.09000 * 109.47693 * 150.00009 * 1 2 3 27 27 H 0.97004 * 120.00466 * 0.02562 * 5 3 2 28 28 H 1.09007 * 109.47143 * 299.99845 * 6 5 3 29 29 H 1.09002 * 109.47311 * 59.99969 * 6 5 3 30 30 H 1.09007 * 109.46938 * 60.00208 * 8 7 6 31 31 H 1.09000 * 109.47175 * 179.97438 * 8 7 6 32 32 H 1.08995 * 109.47384 * 300.00147 * 8 7 6 33 33 H 1.09007 * 109.46981 * 60.00728 * 9 7 6 34 34 H 1.09000 * 109.47082 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47322 * 300.00389 * 9 7 6 36 36 H 1.08999 * 109.46673 * 299.99773 * 10 7 6 37 37 H 1.09001 * 109.46529 * 59.99291 * 10 7 6 38 38 H 0.96997 * 119.99951 * 179.97438 * 14 13 11 39 39 H 1.09001 * 110.67461 * 183.23307 * 19 2 1 40 40 H 1.08997 * 110.47708 * 37.64106 * 20 19 2 41 41 H 1.09002 * 110.53308 * 274.97498 * 20 19 2 42 42 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 43 43 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 44 44 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 45 45 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 46 46 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 47 47 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3343 -0.0005 6 6 2.1975 3.6030 -0.0011 7 6 1.2034 4.7660 -0.0010 8 6 0.3233 4.6847 -1.2499 9 6 0.3241 4.6852 1.2485 10 6 1.9684 6.0911 -0.0009 11 6 0.9891 7.2365 -0.0014 12 1 -0.0727 7.0392 -0.0022 13 6 1.4488 8.5364 -0.0020 14 7 0.5942 9.5361 -0.0030 15 14 3.2853 8.8776 -0.0014 16 1 3.7726 8.9673 -1.4013 17 1 3.5502 10.1606 0.6980 18 1 3.9932 7.7764 0.6995 19 6 2.1974 -1.2688 0.0006 20 6 1.7278 -2.1784 1.1638 21 6 2.0868 -3.6042 0.6967 22 6 2.1615 -3.5587 -0.8395 23 6 1.8447 -2.1068 -1.2535 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6612 0.8889 29 1 2.8242 3.6604 -0.8911 30 1 -0.2218 3.7407 -1.2495 31 1 -0.3853 5.5130 -1.2496 32 1 0.9496 4.7422 -2.1401 33 1 0.9511 4.7432 2.1384 34 1 -0.3844 5.5135 1.2484 35 1 -0.2209 3.7413 1.2489 36 1 2.5950 6.1487 0.8891 37 1 2.5951 6.1487 -0.8909 38 1 0.9176 10.4506 -0.0030 39 1 3.2716 -1.0930 0.0580 40 1 0.6518 -2.0847 1.3107 41 1 2.2618 -1.9319 2.0815 42 1 1.3148 -4.3060 1.0123 43 1 3.0513 -3.9003 1.1088 44 1 3.1627 -3.8320 -1.1729 45 1 1.4265 -4.2391 -1.2695 46 1 2.4640 -1.8073 -2.0989 47 1 0.7875 -2.0017 -1.4975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344980429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:38 Heat of formation + Delta-G solvation = -49.824949 kcal Electronic energy + Delta-G solvation = -23076.076520 eV Core-core repulsion = 19872.081833 eV Total energy + Delta-G solvation = -3203.994687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36597 -38.35287 -37.06406 -34.75886 -33.44923 -32.01509 -28.98653 -28.48009 -27.77269 -26.93106 -26.54600 -25.66654 -22.54164 -20.95202 -20.56890 -19.46615 -18.79785 -17.54479 -16.81510 -16.67564 -15.76769 -15.56728 -15.01471 -14.31503 -14.13491 -13.88292 -13.76491 -13.62815 -13.29357 -13.18665 -12.77052 -12.45596 -12.39755 -12.29122 -12.22320 -11.63026 -11.53702 -11.40032 -11.22791 -11.10426 -10.99720 -10.83257 -10.70758 -10.60247 -10.45652 -10.02081 -9.95174 -9.73242 -9.49498 -8.98019 -8.91485 -8.52381 -8.46102 -6.03267 -4.00399 2.69246 3.32344 3.33000 3.40896 3.45563 4.04340 4.37385 4.39382 4.47053 4.58619 4.86707 5.09732 5.13696 5.15601 5.23053 5.29501 5.30050 5.39107 5.40901 5.47061 5.56870 5.59238 5.63942 5.66120 5.76857 5.91735 5.96975 6.05995 6.13510 6.14285 6.19638 6.34881 6.46545 6.53817 6.60874 6.75695 6.92533 7.02036 7.02598 7.06617 7.22396 7.38815 7.79253 8.08012 8.53820 8.73946 9.00764 9.59617 11.09473 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039511 B = 0.003182 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.493242 B = 8798.113087 C = 9081.450964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.629 5.629 3 C 0.703 3.297 4 O -0.594 6.594 5 N -0.736 5.736 6 C 0.143 3.857 7 C -0.063 4.063 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.002 4.002 11 C -0.510 4.510 12 H 0.078 0.922 13 C 0.066 3.934 14 N -0.905 5.905 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.265 1.265 19 C 0.153 3.847 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 -25.065 -0.084 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.366 5.366 3 C 0.404 3.596 4 O -0.473 6.473 5 N -0.392 5.392 6 C 0.019 3.981 7 C -0.063 4.063 8 C -0.185 4.185 9 C -0.184 4.184 10 C -0.040 4.040 11 C -0.548 4.548 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.544 5.544 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.189 1.189 19 C 0.049 3.951 20 C -0.174 4.174 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.175 4.175 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.232 0.768 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.686 -24.822 -0.080 24.831 hybrid contribution 0.379 0.362 -0.028 0.525 sum -0.307 -24.460 -0.108 24.462 Atomic orbital electron populations 1.21679 0.80365 1.02913 1.01670 1.46937 1.06021 1.04771 1.78831 1.15942 0.85358 0.80451 0.77861 1.90889 1.11671 1.86262 1.58481 1.45474 1.09994 1.04840 1.78926 1.21502 0.94366 0.80581 1.01604 1.20697 0.95221 0.94723 0.95698 1.21764 0.99734 1.00070 0.96889 1.21759 0.99728 1.00092 0.96865 1.19589 0.96026 0.91782 0.96574 1.21079 0.94381 0.88992 1.50346 0.90407 1.24999 0.97361 0.96362 0.94736 1.69905 1.34073 0.98976 1.51422 0.86856 0.86621 0.77766 0.78520 1.20376 1.21533 1.18944 1.21942 0.97931 0.81218 0.94012 1.22718 1.01616 0.94551 0.98486 1.22061 1.01731 0.96583 0.95646 1.22059 1.01829 0.96389 0.95736 1.22735 1.01881 0.94722 0.98212 0.92705 0.91419 0.90785 0.76797 0.92045 0.92063 0.95228 0.90904 0.93390 0.93388 0.90915 0.95176 0.96316 0.96778 0.92814 0.87430 0.91194 0.91260 0.91693 0.91612 0.91607 0.91706 0.91244 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 8.87 59.85 0.53 1.17 16 2 N -0.63 -7.42 2.89 -177.33 -0.51 -7.93 16 3 C 0.70 11.07 8.28 -86.92 -0.72 10.35 16 4 O -0.59 -11.71 15.72 5.29 0.08 -11.62 16 5 N -0.74 -10.92 4.82 -65.23 -0.31 -11.24 16 6 C 0.14 2.49 4.56 -4.04 -0.02 2.47 16 7 C -0.06 -1.16 0.54 -154.51 -0.08 -1.25 16 8 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 9 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 10 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 11 C -0.51 -13.67 8.20 -34.44 -0.28 -13.95 16 12 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 13 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 14 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 15 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 19 C 0.15 1.62 3.29 -65.89 -0.22 1.41 16 20 C -0.14 -1.13 6.38 -25.03 -0.16 -1.29 16 21 C -0.12 -0.83 6.80 -25.61 -0.17 -1.01 16 22 C -0.12 -0.84 6.80 -25.62 -0.17 -1.01 16 23 C -0.14 -1.17 6.39 -25.07 -0.16 -1.33 16 24 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 25 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 26 H 0.07 0.48 6.38 -51.93 -0.33 0.15 16 27 H 0.40 5.00 3.89 -40.82 -0.16 4.84 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.42 6.86 -51.92 -0.36 0.06 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 35 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.11 1.40 7.00 -51.93 -0.36 1.04 16 40 H 0.07 0.53 7.08 -51.93 -0.37 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -31.67 352.96 -8.54 -40.21 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.17 Total: 1.43 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.04 Total: -6.61 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.05 Total: -45.68 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.67 -8.54 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344980429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.613 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds