Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00261 * 2 1 4 4 O 1.21585 * 119.99975 * 179.97438 * 3 2 1 5 5 N 1.34771 * 119.99862 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47522 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46922 * 299.99681 * 7 6 5 9 9 C 1.52998 * 109.47193 * 59.99455 * 7 6 5 10 10 C 1.53003 * 109.47398 * 179.97438 * 7 6 5 11 11 C 1.50696 * 109.47174 * 179.97438 * 10 7 6 12 12 H 1.07999 * 120.00419 * 359.97438 * 11 10 7 13 13 C 1.37877 * 119.99758 * 180.02562 * 11 10 7 14 14 N 1.31522 * 119.99945 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00165 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47191 * 90.00193 * 15 13 11 17 17 H 1.48508 * 109.47261 * 210.00006 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00023 * 15 13 11 19 19 C 1.46500 * 119.99716 * 179.97438 * 2 1 3 20 20 C 1.54961 * 110.92632 * 306.54194 * 19 2 1 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 2 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47349 * 270.00323 * 1 2 3 25 25 H 1.09003 * 109.47237 * 29.99893 * 1 2 3 26 26 H 1.09000 * 109.47693 * 150.00009 * 1 2 3 27 27 H 0.97004 * 120.00466 * 0.02562 * 5 3 2 28 28 H 1.09007 * 109.47143 * 299.99845 * 6 5 3 29 29 H 1.09002 * 109.47311 * 59.99969 * 6 5 3 30 30 H 1.09007 * 109.46938 * 60.00208 * 8 7 6 31 31 H 1.09000 * 109.47175 * 179.97438 * 8 7 6 32 32 H 1.08995 * 109.47384 * 300.00147 * 8 7 6 33 33 H 1.09007 * 109.46981 * 60.00728 * 9 7 6 34 34 H 1.09000 * 109.47082 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.47322 * 300.00389 * 9 7 6 36 36 H 1.08999 * 109.46673 * 299.99773 * 10 7 6 37 37 H 1.09001 * 109.46529 * 59.99291 * 10 7 6 38 38 H 0.96997 * 119.99951 * 179.97438 * 14 13 11 39 39 H 1.09001 * 110.67461 * 183.23307 * 19 2 1 40 40 H 1.08997 * 110.47708 * 37.64106 * 20 19 2 41 41 H 1.09002 * 110.53308 * 274.97498 * 20 19 2 42 42 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 43 43 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 44 44 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 45 45 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 46 46 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 47 47 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3343 -0.0005 6 6 2.1975 3.6030 -0.0011 7 6 1.2034 4.7660 -0.0010 8 6 0.3233 4.6847 -1.2499 9 6 0.3241 4.6852 1.2485 10 6 1.9684 6.0911 -0.0009 11 6 0.9891 7.2365 -0.0014 12 1 -0.0727 7.0392 -0.0022 13 6 1.4488 8.5364 -0.0020 14 7 0.5942 9.5361 -0.0030 15 14 3.2853 8.8776 -0.0014 16 1 3.7726 8.9673 -1.4013 17 1 3.5502 10.1606 0.6980 18 1 3.9932 7.7764 0.6995 19 6 2.1974 -1.2688 0.0006 20 6 1.7278 -2.1784 1.1638 21 6 2.0868 -3.6042 0.6967 22 6 2.1615 -3.5587 -0.8395 23 6 1.8447 -2.1068 -1.2535 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8242 3.6612 0.8889 29 1 2.8242 3.6604 -0.8911 30 1 -0.2218 3.7407 -1.2495 31 1 -0.3853 5.5130 -1.2496 32 1 0.9496 4.7422 -2.1401 33 1 0.9511 4.7432 2.1384 34 1 -0.3844 5.5135 1.2484 35 1 -0.2209 3.7413 1.2489 36 1 2.5950 6.1487 0.8891 37 1 2.5951 6.1487 -0.8909 38 1 0.9176 10.4506 -0.0030 39 1 3.2716 -1.0930 0.0580 40 1 0.6518 -2.0847 1.3107 41 1 2.2618 -1.9319 2.0815 42 1 1.3148 -4.3060 1.0123 43 1 3.0513 -3.9003 1.1088 44 1 3.1627 -3.8320 -1.1729 45 1 1.4265 -4.2391 -1.2695 46 1 2.4640 -1.8073 -2.0989 47 1 0.7875 -2.0017 -1.4975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344980429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -68.642368 kcal Electronic energy + Delta-G solvation = -23076.892505 eV Core-core repulsion = 19872.081833 eV Total energy + Delta-G solvation = -3204.810672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47212 -39.39522 -38.38164 -35.78952 -35.02634 -33.82245 -29.82961 -29.60952 -29.07303 -27.99191 -27.93616 -26.87996 -24.35432 -22.03269 -21.13929 -20.55670 -19.96395 -18.97021 -18.78596 -17.67948 -16.73691 -16.49974 -16.34507 -15.85438 -15.47234 -15.41023 -15.03719 -14.43426 -14.30813 -14.26400 -14.18636 -14.13763 -13.71902 -13.16453 -13.14200 -12.93928 -12.84092 -12.61514 -12.34530 -12.30499 -12.15150 -12.11416 -11.99335 -11.77623 -11.56580 -11.51821 -11.34027 -11.24013 -11.12055 -10.90691 -10.70115 -10.17719 -9.43737 -8.22248 -6.22083 1.35893 1.38819 1.48971 1.65396 2.12381 2.39356 3.00774 3.13273 3.70845 3.72758 3.91848 3.96440 4.06222 4.15260 4.22554 4.43677 4.49860 4.54213 4.56267 4.63500 4.68428 4.71424 4.76343 4.81780 4.84132 4.94534 4.95336 5.01851 5.09208 5.10624 5.19542 5.26678 5.29410 5.31053 5.36730 5.40544 5.49942 5.50255 5.55632 5.60822 5.69348 5.76868 5.99055 6.38387 6.84463 6.97744 7.40686 7.55775 8.93269 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039511 B = 0.003182 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.493242 B = 8798.113087 C = 9081.450964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.622 5.622 3 C 0.696 3.304 4 O -0.641 6.641 5 N -0.725 5.725 6 C 0.157 3.843 7 C -0.057 4.057 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.003 4.003 11 C -0.500 4.500 12 H 0.054 0.946 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.933 3.067 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.253 1.253 19 C 0.144 3.856 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.408 0.592 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -27.858 -0.123 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.357 5.357 3 C 0.397 3.603 4 O -0.523 6.523 5 N -0.383 5.383 6 C 0.032 3.968 7 C -0.058 4.058 8 C -0.179 4.179 9 C -0.179 4.179 10 C -0.041 4.041 11 C -0.539 4.539 12 H 0.072 0.928 13 C -0.190 4.190 14 N -0.592 5.592 15 Si 0.758 3.242 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.177 1.177 19 C 0.039 3.961 20 C -0.167 4.167 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.170 4.170 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.247 0.753 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.378 -27.666 -0.119 27.700 hybrid contribution 0.509 1.160 -0.016 1.267 sum -0.869 -26.506 -0.134 26.520 Atomic orbital electron populations 1.21977 0.77796 1.04472 1.03111 1.47013 1.07578 1.03761 1.77357 1.16143 0.84916 0.81445 0.77747 1.90858 1.13904 1.87034 1.60534 1.45183 1.10377 1.03821 1.78931 1.21127 0.93801 0.81260 1.00595 1.20556 0.95316 0.92934 0.96958 1.21686 0.99139 1.01050 0.96032 1.21682 0.99133 1.01055 0.96018 1.19564 0.95513 0.92936 0.96122 1.21355 0.94172 0.90106 1.48218 0.92779 1.25808 1.01601 0.96473 0.95093 1.70037 1.36100 0.99408 1.53695 0.85918 0.81644 0.77813 0.78835 1.19725 1.21435 1.17695 1.22059 0.96290 0.81280 0.96433 1.22676 1.02218 0.94837 0.96964 1.22059 1.02320 0.95796 0.95484 1.22056 1.02335 0.95448 0.95814 1.22695 1.02397 0.95281 0.96579 0.91268 0.90804 0.88385 0.75287 0.93216 0.93134 0.91512 0.93373 0.93739 0.93800 0.93371 0.91494 0.96759 0.96904 0.92857 0.90764 0.89726 0.92404 0.89922 0.91750 0.91805 0.89952 0.92648 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.87 127.77 1.13 2.02 16 2 N -0.62 -13.45 2.89 -833.22 -2.41 -15.86 16 3 C 0.70 21.19 8.28 179.06 1.48 22.67 16 4 O -0.64 -25.48 15.72 -3.98 -0.06 -25.54 16 5 N -0.73 -20.13 4.82 -478.54 -2.31 -22.43 16 6 C 0.16 5.31 4.56 86.38 0.39 5.70 16 7 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 8 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 9 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 10 C 0.00 -0.16 3.11 29.85 0.09 -0.06 16 11 C -0.50 -27.22 8.20 25.60 0.21 -27.01 16 12 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 13 C 0.01 0.37 5.47 84.65 0.46 0.84 16 14 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 15 Si 0.93 44.80 27.47 68.60 1.88 46.68 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 18 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 19 C 0.14 2.86 3.29 46.31 0.15 3.01 16 20 C -0.13 -1.87 6.38 31.70 0.20 -1.67 16 21 C -0.12 -1.31 6.80 31.32 0.21 -1.09 16 22 C -0.12 -1.33 6.80 31.32 0.21 -1.11 16 23 C -0.13 -1.96 6.39 31.67 0.20 -1.76 16 24 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 25 H 0.07 0.89 6.36 -2.39 -0.02 0.87 16 26 H 0.10 0.84 6.38 -2.39 -0.02 0.82 16 27 H 0.41 9.00 3.89 -92.71 -0.36 8.64 16 28 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.71 6.86 -2.38 -0.02 1.69 16 31 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 35 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 36 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 37 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 1.99 7.00 -2.39 -0.02 1.97 16 40 H 0.08 0.99 7.08 -2.39 -0.02 0.97 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 1.02 6.36 -2.39 -0.02 1.00 16 Total: -1.00 -70.66 352.96 3.82 -66.85 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.52 Total: 16.26 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.89 Total: -7.55 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.42 Total: -96.69 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -70.66 3.82 -66.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344980429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.794 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds