Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 C 1.52998 * 109.47024 * 119.99938 * 2 1 3 5 5 C 1.53003 * 109.46931 * 172.51696 * 4 2 1 6 6 H 1.08994 * 109.58437 * 40.32039 * 5 4 2 7 7 C 1.53192 * 109.58604 * 160.60171 * 5 4 2 8 8 C 1.53034 * 109.31536 * 174.56552 * 7 5 4 9 9 C 1.53041 * 109.53652 * 298.63874 * 8 7 5 10 10 C 1.53192 * 109.31611 * 61.36334 * 9 8 7 11 11 N 1.46923 * 108.77160 * 305.36402 * 10 9 8 12 12 C 1.34776 * 120.62957 * 233.58491 * 11 10 9 13 13 O 1.21592 * 119.99926 * 184.75116 * 12 11 10 14 14 N 1.34771 * 120.00394 * 4.74540 * 12 11 10 15 15 C 1.46497 * 120.00548 * 185.11134 * 14 12 11 16 16 C 1.52995 * 109.47384 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47398 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00026 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00354 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00142 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99788 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47327 * 89.99780 * 21 19 17 23 23 H 1.48497 * 109.47270 * 209.99596 * 21 19 17 24 24 H 1.48503 * 109.47290 * 329.99862 * 21 19 17 25 25 H 1.08991 * 109.47042 * 299.99975 * 1 2 3 26 26 H 1.09001 * 109.46908 * 59.99973 * 1 2 3 27 27 H 1.09002 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46896 * 240.00192 * 2 1 3 29 29 H 1.08997 * 109.46792 * 299.99943 * 3 2 1 30 30 H 1.09000 * 109.47108 * 59.99817 * 3 2 1 31 31 H 1.08998 * 109.46951 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47380 * 52.51993 * 4 2 1 33 33 H 1.08996 * 109.46925 * 292.51699 * 4 2 1 34 34 H 1.08998 * 109.50008 * 294.52148 * 7 5 4 35 35 H 1.09001 * 109.49849 * 54.58217 * 7 5 4 36 36 H 1.08997 * 109.45934 * 58.65346 * 8 7 5 37 37 H 1.09000 * 109.46279 * 178.62925 * 8 7 5 38 38 H 1.09004 * 109.49433 * 181.31752 * 9 8 7 39 39 H 1.09005 * 109.49836 * 301.40826 * 9 8 7 40 40 H 1.08999 * 109.58693 * 65.15230 * 10 9 8 41 41 H 1.08994 * 109.58599 * 185.43589 * 10 9 8 42 42 H 0.97002 * 119.99540 * 5.12044 * 14 12 11 43 43 H 1.09006 * 109.47228 * 300.00467 * 15 14 12 44 44 H 1.09001 * 109.46819 * 60.00404 * 15 14 12 45 45 H 1.09006 * 109.47065 * 300.00255 * 16 15 14 46 46 H 1.09003 * 109.47527 * 60.00005 * 16 15 14 47 47 H 0.97000 * 119.99773 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5585 -0.8860 1.1588 6 1 4.0006 0.0213 0.7473 7 6 4.1307 -1.1481 2.5555 8 6 5.6274 -1.4460 2.4416 9 6 5.8362 -2.7008 1.5907 10 6 5.2834 -2.4563 0.1831 11 7 3.8822 -2.0281 0.2932 12 6 2.9124 -2.6705 -0.3874 13 8 1.7703 -2.2544 -0.3566 14 7 3.2084 -3.7740 -1.1022 15 6 2.1801 -4.4077 -1.9312 16 6 2.7725 -5.6322 -2.6314 17 6 1.7148 -6.2836 -3.4847 18 1 0.7197 -5.8657 -3.5239 19 6 2.0177 -7.4125 -4.2160 20 7 1.0945 -7.9813 -4.9602 21 14 3.7390 -8.1349 -4.1487 22 1 3.8159 -9.1293 -3.0484 23 1 4.0474 -8.8005 -5.4398 24 1 4.7223 -7.0492 -3.9042 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.5716 -1.7030 1.3187 33 1 1.7901 -0.1359 2.1341 34 1 3.9815 -0.2679 3.1809 35 1 3.6222 -2.0023 3.0025 36 1 6.1312 -0.6011 1.9722 37 1 6.0420 -1.6090 3.4364 38 1 6.9010 -2.9258 1.5295 39 1 5.3120 -3.5409 2.0466 40 1 5.8661 -1.6771 -0.3080 41 1 5.3418 -3.3770 -0.3974 42 1 4.1025 -4.1488 -1.0677 43 1 1.3459 -4.7176 -1.3016 44 1 1.8269 -3.6969 -2.6783 45 1 3.6068 -5.3226 -3.2609 46 1 3.1254 -6.3429 -1.8841 47 1 1.3076 -8.7757 -5.4745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345807720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -25.904243 kcal Electronic energy + Delta-G solvation = -23699.857530 eV Core-core repulsion = 20496.900122 eV Total energy + Delta-G solvation = -3202.957407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74053 -37.55034 -36.35415 -34.59822 -33.08776 -32.47099 -31.56381 -29.81780 -26.95173 -26.90569 -25.04936 -24.35267 -22.35413 -21.26062 -20.67264 -19.71845 -19.28116 -17.62709 -16.88603 -16.07472 -15.36850 -15.18735 -14.72049 -14.41181 -14.27889 -14.24496 -13.98124 -13.74228 -13.20798 -13.11218 -12.94546 -12.64523 -12.57427 -12.16259 -11.97794 -11.73077 -11.48046 -11.36527 -11.29096 -11.17833 -11.08496 -10.82000 -10.49854 -10.38918 -10.20850 -10.09316 -9.98696 -9.88344 -9.33655 -8.83638 -8.61023 -8.41047 -8.19796 -6.09749 -4.09429 2.90555 3.25630 3.33209 3.34448 3.53206 4.18533 4.38719 4.58838 4.63955 4.67401 4.86179 5.10287 5.16127 5.23344 5.26825 5.30986 5.32239 5.46822 5.53518 5.61700 5.69580 5.71037 5.79499 5.83377 5.88522 5.94525 6.07108 6.08676 6.10231 6.16274 6.20461 6.28403 6.42167 6.52998 6.61469 6.64111 6.75679 6.95548 7.02609 7.13093 7.27227 7.32705 7.69866 8.31476 8.47547 8.94773 9.01225 9.50690 11.03402 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.004402 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.618260 B = 6359.481404 C = 7583.616561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.108 4.108 5 C 0.164 3.836 6 H 0.068 0.932 7 C -0.133 4.133 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.112 3.888 11 N -0.630 5.630 12 C 0.695 3.305 13 O -0.569 6.569 14 N -0.746 5.746 15 C 0.150 3.850 16 C -0.022 4.022 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.388 0.612 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.364 15.676 14.973 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.212 4.212 4 C -0.145 4.145 5 C 0.060 3.940 6 H 0.085 0.915 7 C -0.171 4.171 8 C -0.155 4.155 9 C -0.175 4.175 10 C -0.012 4.012 11 N -0.368 5.368 12 C 0.397 3.603 13 O -0.448 6.448 14 N -0.402 5.402 15 C 0.027 3.973 16 C -0.059 4.059 17 C -0.559 4.559 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.454 15.821 14.822 23.651 hybrid contribution 1.466 -0.727 -0.042 1.636 sum 10.919 15.094 14.780 23.780 Atomic orbital electron populations 1.21658 0.95845 1.01846 0.99647 1.21249 0.95635 0.92890 0.99952 1.22069 1.00322 0.98071 1.00776 1.22094 0.92655 1.03017 0.96762 1.21186 0.96942 0.87233 0.88625 0.91470 1.22026 0.95817 1.02189 0.97082 1.21492 0.96363 0.97789 0.99891 1.21934 1.01100 0.98641 0.95778 1.21572 0.82415 1.00214 0.97004 1.47285 1.06036 1.34259 1.49269 1.16021 0.84683 0.80541 0.79014 1.90945 1.19690 1.67182 1.66983 1.45840 1.15804 1.28621 1.49951 1.21317 0.89305 0.94571 0.92128 1.19787 0.97663 0.92785 0.95700 1.20919 0.98023 1.10974 1.25985 0.90611 1.24994 0.97021 0.96477 0.94773 1.69905 1.33458 1.21097 1.29289 0.86759 0.85301 0.79515 0.77526 1.20260 1.21299 1.19144 0.94357 0.93949 0.91966 0.88987 0.93454 0.93596 0.93420 0.88212 0.93772 0.91082 0.91504 0.91926 0.91898 0.90910 0.91382 0.91632 0.90309 0.77722 0.92214 0.92346 0.96202 0.96614 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.04 37.16 0.34 -1.50 16 2 C -0.08 -1.08 1.87 -90.61 -0.17 -1.25 16 3 C -0.16 -1.76 9.02 37.16 0.34 -1.42 16 4 C -0.11 -1.39 3.70 -26.73 -0.10 -1.49 16 5 C 0.16 1.84 2.85 -67.60 -0.19 1.65 16 6 H 0.07 0.73 6.10 -51.93 -0.32 0.42 16 7 C -0.13 -1.22 5.28 -26.61 -0.14 -1.36 16 8 C -0.12 -0.91 5.88 -26.69 -0.16 -1.07 16 9 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 10 C 0.11 1.10 6.43 -3.71 -0.02 1.08 16 11 N -0.63 -7.94 2.97 -170.92 -0.51 -8.45 16 12 C 0.69 11.27 7.69 -86.92 -0.67 10.60 16 13 O -0.57 -10.42 8.76 5.29 0.05 -10.38 16 14 N -0.75 -12.45 5.45 -65.23 -0.36 -12.80 16 15 C 0.15 3.05 5.62 -4.05 -0.02 3.03 16 16 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 17 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 21 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.98 7.55 -51.93 -0.39 0.59 16 28 H 0.09 1.54 5.71 -51.93 -0.30 1.24 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.50 6.36 -51.93 -0.33 0.17 16 32 H 0.10 1.58 5.77 -52.21 -0.30 1.28 16 33 H 0.04 0.51 7.99 -51.93 -0.41 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.77 5.58 -51.93 -0.29 0.48 16 42 H 0.39 5.62 5.97 -40.82 -0.24 5.37 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -30.40 350.03 -9.38 -39.78 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.43 Total: 3.49 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.51 Total: -6.68 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.09 Total: -47.89 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.05 Total: -10.38 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.40 -9.38 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345807720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.874 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds