Wall clock time and date at job start Tue Mar 31 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47301 * 119.99693 * 2 1 3 5 5 C 1.52999 * 109.46726 * 67.28520 * 4 2 1 6 6 H 1.09000 * 109.70245 * 315.03333 * 5 4 2 7 7 C 1.52763 * 109.50793 * 194.91646 * 5 4 2 8 8 C 1.53044 * 109.38277 * 185.70577 * 7 5 4 9 9 C 1.53036 * 109.53803 * 61.24084 * 8 7 5 10 10 C 1.53196 * 109.31395 * 298.63563 * 9 8 7 11 11 N 1.46918 * 108.77444 * 54.63242 * 10 9 8 12 12 C 1.34783 * 120.62867 * 126.36928 * 11 10 9 13 13 O 1.21587 * 119.99601 * 186.16804 * 12 11 10 14 14 N 1.34772 * 119.99733 * 6.16933 * 12 11 10 15 15 C 1.46504 * 119.99525 * 175.22759 * 14 12 11 16 16 C 1.53002 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.50710 * 109.46772 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99493 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99550 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00661 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47234 * 89.99619 * 21 19 17 23 23 H 1.48495 * 109.47342 * 210.00315 * 21 19 17 24 24 H 1.48510 * 109.46926 * 330.00177 * 21 19 17 25 25 H 1.08997 * 109.47073 * 60.00127 * 1 2 3 26 26 H 1.08998 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47307 * 299.99813 * 1 2 3 28 28 H 1.08995 * 109.47307 * 240.00187 * 2 1 3 29 29 H 1.08996 * 109.47433 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47376 * 300.00044 * 3 2 1 31 31 H 1.08998 * 109.47308 * 59.99591 * 3 2 1 32 32 H 1.08998 * 109.47320 * 307.28898 * 4 2 1 33 33 H 1.08995 * 109.47566 * 187.28320 * 4 2 1 34 34 H 1.09000 * 109.56469 * 65.67706 * 7 5 4 35 35 H 1.08994 * 109.39130 * 305.63179 * 7 5 4 36 36 H 1.09000 * 109.45836 * 301.22129 * 8 7 5 37 37 H 1.09003 * 109.44610 * 181.25788 * 8 7 5 38 38 H 1.09005 * 109.49930 * 178.68518 * 9 8 7 39 39 H 1.08995 * 109.49759 * 58.58678 * 9 8 7 40 40 H 1.08997 * 109.58386 * 294.84480 * 10 9 8 41 41 H 1.08999 * 109.70223 * 174.49192 * 10 9 8 42 42 H 0.96996 * 120.00237 * 355.22443 * 14 12 11 43 43 H 1.08991 * 109.47434 * 59.99976 * 15 14 12 44 44 H 1.09002 * 109.47168 * 299.99737 * 15 14 12 45 45 H 1.09002 * 109.47676 * 60.00026 * 16 15 14 46 46 H 1.09002 * 109.47004 * 299.99708 * 16 15 14 47 47 H 0.96998 * 119.99815 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6849 -2.2067 1.1611 6 1 0.6526 -2.3187 0.8296 7 6 1.8502 -2.8532 2.5354 8 6 1.6331 -4.3634 2.4157 9 6 2.6802 -4.9578 1.4713 10 6 2.5204 -4.3347 0.0809 11 7 2.5833 -2.8724 0.2080 12 6 3.4526 -2.1556 -0.5316 13 8 3.5748 -0.9614 -0.3384 14 7 4.1863 -2.7625 -1.4854 15 6 5.0534 -1.9680 -2.3590 16 6 5.7686 -2.8931 -3.3457 17 6 6.6600 -2.0757 -4.2448 18 1 6.7109 -1.0036 -4.1248 19 6 7.4105 -2.6966 -5.2206 20 7 8.1888 -1.9834 -6.0049 21 14 7.3231 -4.5510 -5.4278 22 1 6.2447 -4.8912 -6.3904 23 1 8.6224 -5.0535 -5.9420 24 1 7.0325 -5.1825 -4.1154 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.5742 -0.2881 2.1344 33 1 3.1222 -0.6098 1.3168 34 1 1.1187 -2.4341 3.2263 35 1 2.8558 -2.6587 2.9081 36 1 0.6359 -4.5566 2.0202 37 1 1.7288 -4.8228 3.3996 38 1 2.5396 -6.0367 1.4047 39 1 3.6782 -4.7435 1.8534 40 1 1.5577 -4.6238 -0.3406 41 1 3.3231 -4.6797 -0.5709 42 1 4.1404 -3.7254 -1.5933 43 1 5.7913 -1.4396 -1.7555 44 1 4.4505 -1.2461 -2.9100 45 1 5.0304 -3.4212 -3.9493 46 1 6.3714 -3.6153 -2.7950 47 1 8.7165 -2.4201 -6.6917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345807721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:47 Heat of formation + Delta-G solvation = -23.298848 kcal Electronic energy + Delta-G solvation = -23750.745708 eV Core-core repulsion = 20547.901279 eV Total energy + Delta-G solvation = -3202.844429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79202 -37.55697 -36.35166 -34.57883 -33.10583 -32.46579 -31.57876 -29.81710 -26.93842 -26.90164 -25.04148 -24.36668 -22.35585 -21.24320 -20.66906 -19.70619 -19.37476 -17.60140 -16.88148 -16.01002 -15.47464 -15.14362 -14.74314 -14.42446 -14.24945 -14.21525 -14.01205 -13.72393 -13.22723 -13.11194 -12.90566 -12.68938 -12.57759 -12.15198 -11.97884 -11.74472 -11.45595 -11.37184 -11.32181 -11.16576 -11.08690 -10.81374 -10.50318 -10.39397 -10.15843 -10.09524 -9.97591 -9.89651 -9.33573 -8.77549 -8.61011 -8.41192 -8.20374 -6.09713 -4.09396 2.90038 3.25641 3.33254 3.34502 3.52708 4.19232 4.38755 4.59636 4.63602 4.67279 4.87322 5.10919 5.16478 5.23390 5.26015 5.32028 5.33069 5.46901 5.53814 5.61487 5.69439 5.71571 5.80010 5.84416 5.89602 5.94039 6.08015 6.09293 6.10705 6.17082 6.21463 6.28255 6.43486 6.53543 6.61374 6.65352 6.74829 6.92714 7.04620 7.13112 7.27201 7.32462 7.69825 8.31130 8.47490 8.94769 9.00740 9.50723 11.03446 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.004450 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.009532 B = 6291.103289 C = 7471.978920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.110 4.110 5 C 0.164 3.836 6 H 0.067 0.933 7 C -0.133 4.133 8 C -0.118 4.118 9 C -0.135 4.135 10 C 0.112 3.888 11 N -0.630 5.630 12 C 0.696 3.304 13 O -0.569 6.569 14 N -0.746 5.746 15 C 0.150 3.850 16 C -0.022 4.022 17 C -0.520 4.520 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.038 -5.156 16.972 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.147 4.147 5 C 0.061 3.939 6 H 0.084 0.916 7 C -0.171 4.171 8 C -0.155 4.155 9 C -0.173 4.173 10 C -0.012 4.012 11 N -0.369 5.369 12 C 0.399 3.601 13 O -0.448 6.448 14 N -0.402 5.402 15 C 0.027 3.973 16 C -0.059 4.059 17 C -0.559 4.559 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.801 -4.254 16.917 23.536 hybrid contribution -0.025 -1.606 -0.325 1.639 sum -15.827 -5.860 16.592 23.667 Atomic orbital electron populations 1.22063 0.97790 1.00595 1.00797 1.21270 0.92167 0.96577 0.99865 1.21653 1.01923 0.95711 0.99665 1.22168 1.04584 0.91364 0.96612 1.21092 0.92331 0.93227 0.87297 0.91562 1.21947 1.02588 0.95417 0.97168 1.21495 0.98965 0.95642 0.99441 1.21915 1.00128 0.99850 0.95451 1.21576 1.02005 0.80451 0.97195 1.47252 1.40395 1.06057 1.43148 1.15997 0.79335 0.85159 0.79658 1.90931 1.70061 1.13129 1.70660 1.45852 1.47484 1.10742 1.36113 1.21320 0.91498 0.93949 0.90560 1.19791 0.95704 0.95999 0.94451 1.20919 1.24085 0.95725 1.15162 0.90610 1.24994 0.94777 0.98168 0.95326 1.69905 1.27671 1.35800 1.20372 0.86759 0.77516 0.86125 0.78705 1.20257 1.21299 1.19145 0.93442 0.93441 0.93570 0.89330 0.91919 0.93939 0.94337 0.93898 0.87657 0.91076 0.91475 0.91933 0.91898 0.90909 0.91401 0.91673 0.90334 0.77727 0.92191 0.92352 0.96620 0.96180 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.01 37.16 0.33 -1.47 16 2 C -0.08 -1.12 1.87 -90.62 -0.17 -1.29 16 3 C -0.13 -1.86 9.03 37.16 0.34 -1.52 16 4 C -0.11 -1.42 3.66 -26.73 -0.10 -1.52 16 5 C 0.16 1.85 2.83 -67.82 -0.19 1.66 16 6 H 0.07 0.72 6.17 -51.93 -0.32 0.40 16 7 C -0.13 -1.22 5.29 -26.83 -0.14 -1.36 16 8 C -0.12 -0.92 5.89 -26.69 -0.16 -1.08 16 9 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 10 C 0.11 1.10 6.38 -3.71 -0.02 1.07 16 11 N -0.63 -7.94 2.98 -171.17 -0.51 -8.45 16 12 C 0.70 11.27 7.34 -86.92 -0.64 10.63 16 13 O -0.57 -10.41 8.86 5.29 0.05 -10.37 16 14 N -0.75 -12.44 5.46 -65.22 -0.36 -12.79 16 15 C 0.15 3.05 5.62 -4.04 -0.02 3.03 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 21 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.52 6.39 -51.93 -0.33 0.18 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.50 5.41 -51.93 -0.28 1.22 16 29 H 0.06 1.00 7.50 -51.93 -0.39 0.61 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.49 8.05 -51.93 -0.42 0.08 16 33 H 0.11 1.66 5.79 -52.66 -0.31 1.36 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.77 5.67 -51.93 -0.29 0.47 16 42 H 0.39 5.61 5.97 -40.82 -0.24 5.37 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -30.40 349.62 -9.36 -39.76 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.43 Total: 3.59 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.48 Total: -6.78 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.09 Total: -47.87 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.05 Total: -10.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.40 -9.36 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345807721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.461 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds