Wall clock time and date at job start Tue Mar 31 2020 05:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47301 * 119.99693 * 2 1 3 5 5 C 1.52999 * 109.46726 * 67.28520 * 4 2 1 6 6 H 1.09000 * 109.70245 * 315.03333 * 5 4 2 7 7 C 1.52763 * 109.50793 * 194.91646 * 5 4 2 8 8 C 1.53044 * 109.38277 * 185.70577 * 7 5 4 9 9 C 1.53036 * 109.53803 * 61.24084 * 8 7 5 10 10 C 1.53196 * 109.31395 * 298.63563 * 9 8 7 11 11 N 1.46918 * 108.77444 * 54.63242 * 10 9 8 12 12 C 1.34783 * 120.62867 * 126.36928 * 11 10 9 13 13 O 1.21587 * 119.99601 * 186.16804 * 12 11 10 14 14 N 1.34772 * 119.99733 * 6.16933 * 12 11 10 15 15 C 1.46504 * 119.99525 * 175.22759 * 14 12 11 16 16 C 1.53002 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.50710 * 109.46772 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99493 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99550 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00661 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47234 * 89.99619 * 21 19 17 23 23 H 1.48495 * 109.47342 * 210.00315 * 21 19 17 24 24 H 1.48510 * 109.46926 * 330.00177 * 21 19 17 25 25 H 1.08997 * 109.47073 * 60.00127 * 1 2 3 26 26 H 1.08998 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47307 * 299.99813 * 1 2 3 28 28 H 1.08995 * 109.47307 * 240.00187 * 2 1 3 29 29 H 1.08996 * 109.47433 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47376 * 300.00044 * 3 2 1 31 31 H 1.08998 * 109.47308 * 59.99591 * 3 2 1 32 32 H 1.08998 * 109.47320 * 307.28898 * 4 2 1 33 33 H 1.08995 * 109.47566 * 187.28320 * 4 2 1 34 34 H 1.09000 * 109.56469 * 65.67706 * 7 5 4 35 35 H 1.08994 * 109.39130 * 305.63179 * 7 5 4 36 36 H 1.09000 * 109.45836 * 301.22129 * 8 7 5 37 37 H 1.09003 * 109.44610 * 181.25788 * 8 7 5 38 38 H 1.09005 * 109.49930 * 178.68518 * 9 8 7 39 39 H 1.08995 * 109.49759 * 58.58678 * 9 8 7 40 40 H 1.08997 * 109.58386 * 294.84480 * 10 9 8 41 41 H 1.08999 * 109.70223 * 174.49192 * 10 9 8 42 42 H 0.96996 * 120.00237 * 355.22443 * 14 12 11 43 43 H 1.08991 * 109.47434 * 59.99976 * 15 14 12 44 44 H 1.09002 * 109.47168 * 299.99737 * 15 14 12 45 45 H 1.09002 * 109.47676 * 60.00026 * 16 15 14 46 46 H 1.09002 * 109.47004 * 299.99708 * 16 15 14 47 47 H 0.96998 * 119.99815 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6849 -2.2067 1.1611 6 1 0.6526 -2.3187 0.8296 7 6 1.8502 -2.8532 2.5354 8 6 1.6331 -4.3634 2.4157 9 6 2.6802 -4.9578 1.4713 10 6 2.5204 -4.3347 0.0809 11 7 2.5833 -2.8724 0.2080 12 6 3.4526 -2.1556 -0.5316 13 8 3.5748 -0.9614 -0.3384 14 7 4.1863 -2.7625 -1.4854 15 6 5.0534 -1.9680 -2.3590 16 6 5.7686 -2.8931 -3.3457 17 6 6.6600 -2.0757 -4.2448 18 1 6.7109 -1.0036 -4.1248 19 6 7.4105 -2.6966 -5.2206 20 7 8.1888 -1.9834 -6.0049 21 14 7.3231 -4.5510 -5.4278 22 1 6.2447 -4.8912 -6.3904 23 1 8.6224 -5.0535 -5.9420 24 1 7.0325 -5.1825 -4.1154 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.5742 -0.2881 2.1344 33 1 3.1222 -0.6098 1.3168 34 1 1.1187 -2.4341 3.2263 35 1 2.8558 -2.6587 2.9081 36 1 0.6359 -4.5566 2.0202 37 1 1.7288 -4.8228 3.3996 38 1 2.5396 -6.0367 1.4047 39 1 3.6782 -4.7435 1.8534 40 1 1.5577 -4.6238 -0.3406 41 1 3.3231 -4.6797 -0.5709 42 1 4.1404 -3.7254 -1.5933 43 1 5.7913 -1.4396 -1.7555 44 1 4.4505 -1.2461 -2.9100 45 1 5.0304 -3.4212 -3.9493 46 1 6.3714 -3.6153 -2.7950 47 1 8.7165 -2.4201 -6.6917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345807721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:46 Heat of formation + Delta-G solvation = -41.560638 kcal Electronic energy + Delta-G solvation = -23751.537599 eV Core-core repulsion = 20547.901279 eV Total energy + Delta-G solvation = -3203.636320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89925 -38.64155 -37.46434 -36.12141 -34.74226 -33.74699 -32.54867 -31.49942 -27.99014 -27.89569 -26.68141 -25.39445 -23.42299 -22.51414 -22.11567 -20.68324 -20.55845 -18.96601 -18.69181 -17.16527 -16.69206 -16.41733 -16.11353 -15.67752 -15.46286 -15.29238 -15.17367 -14.93818 -14.61272 -14.28975 -14.14712 -13.92295 -13.62103 -13.33333 -13.10377 -13.00406 -12.98980 -12.72215 -12.26332 -12.18122 -12.09069 -12.03993 -11.78839 -11.75525 -11.55527 -11.47952 -11.42170 -11.17269 -11.08121 -10.78009 -10.02616 -9.74403 -9.30644 -8.29709 -6.36719 1.38380 1.41229 1.52433 1.77278 2.27843 2.36919 3.05183 3.05348 3.80042 3.86882 3.95593 4.11760 4.23115 4.26815 4.35809 4.38166 4.38955 4.47821 4.56571 4.60481 4.73116 4.77241 4.82409 4.88555 4.90315 4.98194 5.00246 5.06543 5.08249 5.17794 5.18576 5.21403 5.24944 5.34555 5.42593 5.45550 5.48674 5.52182 5.58129 5.70452 5.80706 5.96436 6.08474 6.24081 6.70438 7.12467 7.27864 7.75711 8.87247 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.004450 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.009532 B = 6291.103289 C = 7471.978920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.104 4.104 5 C 0.162 3.838 6 H 0.080 0.920 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.103 3.897 11 N -0.623 5.623 12 C 0.688 3.312 13 O -0.596 6.596 14 N -0.741 5.741 15 C 0.170 3.830 16 C -0.011 4.011 17 C -0.537 4.537 18 H 0.028 0.972 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.238 1.238 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.401 0.599 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 -8.407 18.646 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.187 4.187 4 C -0.142 4.142 5 C 0.059 3.941 6 H 0.098 0.902 7 C -0.167 4.167 8 C -0.152 4.152 9 C -0.169 4.169 10 C -0.019 4.019 11 N -0.361 5.361 12 C 0.391 3.609 13 O -0.477 6.477 14 N -0.399 5.399 15 C 0.045 3.955 16 C -0.049 4.049 17 C -0.576 4.576 18 H 0.046 0.954 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.162 1.162 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.239 0.761 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.323 -7.536 18.637 27.200 hybrid contribution 0.744 -0.451 -0.816 1.193 sum -17.579 -7.987 17.821 26.276 Atomic orbital electron populations 1.21973 0.95517 1.01518 1.01445 1.21173 0.93960 0.95780 0.98932 1.21618 1.00004 0.96595 1.00448 1.22004 1.02443 0.92997 0.96711 1.21239 0.92415 0.92129 0.88329 0.90193 1.21919 1.02227 0.96727 0.95788 1.21499 0.99355 0.94183 1.00153 1.21901 0.99586 1.01127 0.94301 1.21861 1.03050 0.78422 0.98580 1.47322 1.39223 1.07336 1.42258 1.16190 0.79800 0.85053 0.79895 1.90954 1.70839 1.14561 1.71309 1.45510 1.47327 1.11088 1.35974 1.20756 0.91090 0.93422 0.90200 1.19627 0.95338 0.95722 0.94164 1.21239 1.25413 0.94340 1.16571 0.95365 1.26064 0.93997 1.04511 0.94631 1.70078 1.29011 1.38577 1.21432 0.85544 0.77813 0.78428 0.80123 1.18929 1.21188 1.16156 0.93726 0.92351 0.91983 0.92694 0.94859 0.94136 0.92471 0.92145 0.91037 0.89250 0.93132 0.90602 0.90518 0.88601 0.92894 0.89781 0.90350 0.76132 0.94402 0.94342 0.94917 0.94870 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.01 71.98 0.65 -2.50 16 2 C -0.08 -2.22 1.87 -10.79 -0.02 -2.24 16 3 C -0.13 -3.75 9.03 71.98 0.65 -3.10 16 4 C -0.10 -2.64 3.66 30.59 0.11 -2.52 16 5 C 0.16 3.33 2.83 44.83 0.13 3.46 16 6 H 0.08 1.48 6.17 -2.39 -0.01 1.46 16 7 C -0.13 -2.01 5.29 30.53 0.16 -1.85 16 8 C -0.11 -1.34 5.89 30.62 0.18 -1.16 16 9 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 10 C 0.10 1.74 6.38 86.37 0.55 2.29 16 11 N -0.62 -14.84 2.98 -813.71 -2.42 -17.27 16 12 C 0.69 22.43 7.34 179.05 1.31 23.74 16 13 O -0.60 -22.87 8.86 -3.99 -0.04 -22.91 16 14 N -0.74 -24.53 5.46 -478.53 -2.61 -27.14 16 15 C 0.17 7.16 5.62 86.38 0.49 7.64 16 16 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 17 C -0.54 -31.11 9.66 25.60 0.25 -30.86 16 18 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 19 C 0.00 0.29 5.47 84.65 0.46 0.75 16 20 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 21 Si 0.96 42.67 27.47 68.60 1.88 44.55 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.11 6.39 -2.39 -0.02 1.10 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.91 5.41 -2.39 -0.01 1.90 16 29 H 0.03 1.13 7.50 -2.39 -0.02 1.11 16 30 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 33 H 0.07 2.34 5.79 -13.94 -0.08 2.26 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.31 5.67 -2.39 -0.01 1.30 16 42 H 0.40 10.92 5.97 -92.71 -0.55 10.37 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 46 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 47 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -69.84 349.62 2.60 -67.24 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.25 Total: 23.27 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.23 Total: -8.27 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -4.74 Total: -103.89 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.91 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -69.84 2.60 -67.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345807721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.682 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds