Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99797 * 2 1 4 4 O 1.21285 * 120.00490 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00064 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.05367 * 332.54191 * 5 3 2 7 7 C 1.54264 * 110.03465 * 211.12526 * 5 3 2 8 8 C 1.54887 * 104.19654 * 217.10503 * 7 5 3 9 9 C 1.54968 * 102.77815 * 37.91788 * 8 7 5 10 10 C 1.53877 * 110.03199 * 93.96000 * 5 3 2 11 11 H 1.09003 * 110.03001 * 238.61979 * 10 5 3 12 12 N 1.46903 * 110.03332 * 359.97438 * 10 5 3 13 13 C 1.46898 * 111.00078 * 204.31243 * 12 10 5 14 14 C 1.52999 * 109.47047 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46772 * 299.99812 * 14 13 12 16 16 C 1.53000 * 109.47387 * 59.99899 * 14 13 12 17 17 C 1.53001 * 109.46997 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.46937 * 179.97438 * 17 14 13 19 19 H 1.08007 * 120.00598 * 0.02562 * 18 17 14 20 20 C 1.37875 * 120.00355 * 179.97438 * 18 17 14 21 21 N 1.31510 * 120.00886 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99482 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47440 * 89.99908 * 22 20 18 24 24 H 1.48510 * 109.46992 * 209.99733 * 22 20 18 25 25 H 1.48497 * 109.46902 * 329.99540 * 22 20 18 26 26 H 1.09004 * 109.47327 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47236 * 299.99939 * 1 2 3 28 28 H 1.09005 * 109.47291 * 59.99799 * 1 2 3 29 29 H 0.96993 * 120.00547 * 180.02562 * 2 1 3 30 30 H 1.08997 * 110.48738 * 335.78396 * 7 5 3 31 31 H 1.09005 * 110.48759 * 98.29527 * 7 5 3 32 32 H 1.09008 * 110.75505 * 156.25827 * 8 7 5 33 33 H 1.08999 * 110.75910 * 279.44170 * 8 7 5 34 34 H 1.08999 * 110.52598 * 203.43365 * 9 8 7 35 35 H 1.08994 * 110.47550 * 80.76242 * 9 8 7 36 36 H 1.00902 * 110.99638 * 80.35770 * 12 10 5 37 37 H 1.09006 * 109.46764 * 300.00009 * 13 12 10 38 38 H 1.08993 * 109.47440 * 59.99989 * 13 12 10 39 39 H 1.08995 * 109.47279 * 60.00027 * 15 14 13 40 40 H 1.09003 * 109.46783 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.47381 * 299.99809 * 15 14 13 42 42 H 1.08994 * 109.47055 * 59.99966 * 16 14 13 43 43 H 1.08998 * 109.47305 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.46742 * 300.00140 * 16 14 13 45 45 H 1.08997 * 109.46897 * 299.99319 * 17 14 13 46 46 H 1.08994 * 109.47441 * 60.00104 * 17 14 13 47 47 H 0.96993 * 120.00624 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 1 4.0198 0.2587 0.4712 7 6 4.1745 2.4078 0.7486 8 6 5.4294 2.8306 -0.0548 9 6 5.0033 2.5648 -1.5209 10 6 4.1723 1.2675 -1.4430 11 1 4.8012 0.4069 -1.6715 12 7 3.0477 1.3323 -2.3859 13 6 3.4490 0.8588 -3.7173 14 6 2.2543 0.9417 -4.6695 15 6 1.1172 0.0667 -4.1383 16 6 1.7788 2.3927 -4.7662 17 6 2.6721 0.4479 -6.0561 18 6 1.4952 0.5290 -6.9938 19 1 0.5444 0.8964 -6.6367 20 6 1.6324 0.1351 -8.3080 21 7 0.6055 0.2063 -9.1265 22 14 3.2770 -0.4997 -8.9258 23 1 3.3420 -1.9713 -8.7377 24 1 3.4213 -0.1784 -10.3685 25 1 4.3751 0.1459 -8.1627 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9500 -0.8399 -0.0004 30 1 3.4303 3.2041 0.7408 31 1 4.4440 2.1489 1.7726 32 1 5.6483 3.8874 0.0985 33 1 6.2877 2.2164 0.2177 34 1 5.8793 2.4194 -2.1531 35 1 4.3933 3.3866 -1.8956 36 1 2.6690 2.2664 -2.4332 37 1 4.2589 1.4825 -4.0958 38 1 3.7881 -0.1748 -3.6484 39 1 0.8194 0.4180 -3.1504 40 1 0.2662 0.1254 -4.8170 41 1 1.4559 -0.9671 -4.0695 42 1 2.5890 3.0160 -5.1446 43 1 0.9275 2.4517 -5.4442 44 1 1.4811 2.7441 -3.7782 45 1 3.4823 1.0709 -6.4347 46 1 3.0105 -0.5859 -5.9869 47 1 0.7022 -0.0704 -10.0511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345840208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = -60.972349 kcal Electronic energy + Delta-G solvation = -23855.888801 eV Core-core repulsion = 20651.410726 eV Total energy + Delta-G solvation = -3204.478075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22498 -37.98853 -36.80812 -34.36862 -33.32376 -31.94021 -29.76856 -28.02971 -27.05790 -26.35901 -26.29219 -24.61313 -21.95983 -21.50889 -20.92417 -19.53433 -17.92071 -17.19405 -16.80621 -16.20274 -15.61458 -14.98850 -14.71545 -14.61904 -14.12313 -13.98108 -13.62308 -13.56809 -13.01918 -12.87109 -12.65366 -12.27665 -12.25834 -12.18112 -11.83886 -11.53771 -11.34323 -11.22280 -11.02784 -11.01767 -10.84913 -10.80582 -10.78866 -10.48044 -10.32665 -9.77105 -9.67654 -9.60740 -9.25410 -8.92921 -8.88375 -8.48679 -8.12337 -5.98654 -3.94684 2.90555 3.32078 3.39853 3.40471 3.43110 4.22969 4.45950 4.48950 4.54708 4.82080 5.08420 5.24761 5.30397 5.30653 5.34463 5.36356 5.46543 5.49664 5.60057 5.62114 5.71554 5.74083 5.84522 5.88853 5.89767 5.97476 6.05629 6.19154 6.22272 6.27849 6.45711 6.57140 6.64247 6.72735 6.81785 7.11044 7.16052 7.20693 7.32193 7.35645 7.47921 7.64191 7.66888 7.86992 8.46159 8.61605 9.07636 9.64439 11.14542 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.004518 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.252758 B = 6195.627104 C = 6959.960562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.727 5.727 3 C 0.550 3.450 4 O -0.548 6.548 5 C -0.107 4.107 6 H 0.086 0.914 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.152 4.152 10 C 0.096 3.904 11 H 0.084 0.916 12 N -0.681 5.681 13 C 0.069 3.931 14 C -0.048 4.048 15 C -0.115 4.115 16 C -0.130 4.130 17 C -0.003 4.003 18 C -0.506 4.506 19 H 0.077 0.923 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.876 3.124 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.268 1.268 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.398 0.602 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.348 0.652 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.012 0.988 46 H 0.009 0.991 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 0.108 20.934 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.377 5.377 3 C 0.337 3.663 4 O -0.425 6.425 5 C -0.129 4.129 6 H 0.105 0.895 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.191 4.191 10 C -0.016 4.016 11 H 0.102 0.898 12 N -0.313 5.313 13 C -0.059 4.059 14 C -0.048 4.048 15 C -0.172 4.172 16 C -0.188 4.188 17 C -0.041 4.041 18 C -0.544 4.544 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.703 3.297 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.192 1.192 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.230 0.770 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.170 0.830 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.030 0.970 46 H 0.027 0.973 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.240 0.220 20.921 22.140 hybrid contribution 1.660 -0.215 -0.958 1.929 sum 8.900 0.005 19.963 21.857 Atomic orbital electron populations 1.21453 0.80104 1.01712 1.02025 1.45615 1.07362 1.08603 1.76138 1.19970 0.89172 0.83385 0.73789 1.90644 1.70188 1.31452 1.50246 1.22034 0.92869 1.00396 0.97595 0.89545 1.22376 0.97840 0.97130 0.97902 1.22412 0.97309 1.01177 0.94840 1.23133 1.00413 0.98441 0.97136 1.22116 0.91300 0.97584 0.90561 0.89750 1.60661 1.29978 1.31428 1.09194 1.22135 0.97106 0.99123 0.87562 1.20402 0.93779 0.95643 0.94985 1.21588 0.98426 0.97823 0.99370 1.21770 1.01685 0.95545 0.99762 1.19619 0.97265 0.95246 0.91996 1.21142 0.97208 1.42389 0.93652 0.90461 1.25014 0.96078 0.95510 0.96972 1.69905 1.30194 1.49013 1.05441 0.86851 0.85496 0.79465 0.77842 1.20488 1.21594 1.19232 0.91246 0.92976 0.91946 0.76969 0.89630 0.91643 0.91470 0.91533 0.91467 0.91132 0.83029 0.95807 0.91765 0.93670 0.92309 0.94462 0.94225 0.91265 0.94500 0.97017 0.97270 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.70 59.84 0.64 1.59 16 2 N -0.73 -7.74 5.71 -67.08 -0.38 -8.12 16 3 C 0.55 6.99 5.43 -10.98 -0.06 6.93 16 4 O -0.55 -9.01 15.63 5.55 0.09 -8.92 16 5 C -0.11 -1.08 3.29 -90.65 -0.30 -1.38 16 6 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.11 -1.11 6.31 -25.07 -0.16 -1.27 16 8 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 9 C -0.15 -1.59 6.43 -25.03 -0.16 -1.75 16 10 C 0.10 1.06 3.20 -66.59 -0.21 0.85 16 11 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 12 N -0.68 -9.40 3.90 -105.54 -0.41 -9.81 16 13 C 0.07 1.11 4.47 -3.83 -0.02 1.09 16 14 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 15 C -0.11 -2.20 8.06 37.16 0.30 -1.90 16 16 C -0.13 -2.50 7.89 37.16 0.29 -2.21 16 17 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 18 C -0.51 -14.03 8.20 -34.44 -0.28 -14.31 16 19 H 0.08 2.30 5.92 -52.48 -0.31 1.99 16 20 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 22 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.40 3.27 8.83 -40.82 -0.36 2.91 16 30 H 0.09 1.02 6.89 -51.93 -0.36 0.66 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 7.57 -51.93 -0.39 0.44 16 36 H 0.35 5.35 6.02 -39.29 -0.24 5.11 16 37 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 40 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.50 6.62 -51.93 -0.34 1.15 16 44 H 0.04 0.64 6.57 -51.93 -0.34 0.30 16 45 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 46 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -31.69 358.66 -8.09 -39.79 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.49 Total: 4.62 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.40 Total: -12.98 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.02 Total: -45.05 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.69 -8.09 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.187 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds