Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34784 * 120.00017 * 2 1 4 4 O 1.21276 * 119.99770 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99903 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.05760 * 25.25176 * 5 3 2 7 7 C 1.54269 * 110.03299 * 146.67737 * 5 3 2 8 8 C 1.54882 * 104.19638 * 142.88951 * 7 5 3 9 9 C 1.54884 * 102.75089 * 322.05822 * 8 7 5 10 10 C 1.54094 * 109.92691 * 263.80424 * 5 3 2 11 11 H 1.08994 * 110.00534 * 121.37487 * 10 5 3 12 12 N 1.46902 * 110.15863 * 359.88045 * 10 5 3 13 13 C 1.46900 * 110.99800 * 156.42842 * 12 10 5 14 14 C 1.53000 * 109.47031 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47620 * 300.00361 * 14 13 12 16 16 C 1.52996 * 109.46882 * 60.00472 * 14 13 12 17 17 C 1.53002 * 109.47251 * 179.97438 * 14 13 12 18 18 C 1.50690 * 109.47441 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00157 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00455 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47175 * 59.99864 * 22 20 18 24 24 H 1.48501 * 109.47338 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47226 * 299.99935 * 22 20 18 26 26 H 1.09007 * 109.47059 * 60.00603 * 1 2 3 27 27 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47275 * 299.99968 * 1 2 3 29 29 H 0.96999 * 120.00082 * 180.02562 * 2 1 3 30 30 H 1.08996 * 110.48642 * 24.20681 * 7 5 3 31 31 H 1.09000 * 110.48174 * 261.56829 * 7 5 3 32 32 H 1.09003 * 110.75734 * 203.73408 * 8 7 5 33 33 H 1.09006 * 110.91248 * 80.44620 * 8 7 5 34 34 H 1.09001 * 110.48877 * 156.62346 * 9 8 7 35 35 H 1.09000 * 110.48618 * 279.12862 * 9 8 7 36 36 H 1.00892 * 111.00326 * 280.38158 * 12 10 5 37 37 H 1.09003 * 109.47467 * 300.00070 * 13 12 10 38 38 H 1.09004 * 109.46846 * 60.00057 * 13 12 10 39 39 H 1.08998 * 109.46901 * 59.99506 * 15 14 13 40 40 H 1.08991 * 109.47355 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.46585 * 300.00405 * 15 14 13 42 42 H 1.08999 * 109.47646 * 59.99756 * 16 14 13 43 43 H 1.08998 * 109.47381 * 179.97438 * 16 14 13 44 44 H 1.09000 * 109.47527 * 299.99693 * 16 14 13 45 45 H 1.08999 * 109.47264 * 300.00934 * 17 14 13 46 46 H 1.09004 * 109.46581 * 60.00349 * 17 14 13 47 47 H 0.97000 * 120.00110 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0198 0.2411 -0.4359 7 6 4.1747 2.3781 -0.7957 8 6 5.4295 2.8314 -0.0090 9 6 5.0027 2.6225 1.4651 10 6 4.1705 1.3239 1.4410 11 1 4.7988 0.4728 1.7036 12 7 3.0462 1.4291 2.3806 13 6 3.4513 1.0247 3.7335 14 6 2.2569 1.1480 4.6817 15 6 1.7730 2.5992 4.7066 16 6 1.1245 0.2410 4.1960 17 6 2.6786 0.7262 6.0907 18 6 1.5021 0.8470 7.0245 19 1 0.5487 1.1898 6.6505 20 6 1.6426 0.5198 8.3565 21 7 2.8034 0.1017 8.8120 22 14 0.1840 0.6688 9.5139 23 1 -0.9144 -0.2122 9.0420 24 1 0.5933 0.2596 10.8815 25 1 -0.2867 2.0770 9.5382 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9500 -0.8400 -0.0004 30 1 3.4305 3.1741 -0.8185 31 1 4.4464 2.0796 -1.8082 32 1 5.6485 3.8814 -0.2028 33 1 6.2890 2.2075 -0.2544 34 1 5.8786 2.5025 2.1026 35 1 4.3942 3.4592 1.8083 36 1 2.6621 2.3620 2.3819 37 1 3.7964 -0.0091 3.7158 38 1 4.2578 1.6711 4.0797 39 1 1.4725 2.8992 3.7028 40 1 0.9219 2.6868 5.3818 41 1 2.5798 3.2452 5.0526 42 1 1.4691 -0.7929 4.1783 43 1 0.2737 0.3284 4.8717 44 1 0.8238 0.5410 3.1922 45 1 3.0231 -0.3078 6.0727 46 1 3.4856 1.3720 6.4370 47 1 2.9022 -0.1288 9.7490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345840210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -64.627260 kcal Electronic energy + Delta-G solvation = -23796.084189 eV Core-core repulsion = 20591.447626 eV Total energy + Delta-G solvation = -3204.636563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.17969 -37.91056 -36.70340 -34.34797 -33.29130 -31.89747 -29.72820 -27.62529 -26.70783 -26.29896 -26.26130 -24.61082 -22.30399 -21.48346 -20.86625 -19.51115 -17.92511 -17.15961 -16.33308 -16.06859 -15.54940 -14.95905 -14.70051 -14.63993 -14.26549 -13.81121 -13.60599 -13.53104 -12.80196 -12.73403 -12.71182 -12.23023 -12.14515 -11.96852 -11.75835 -11.46683 -11.26328 -11.16835 -10.94552 -10.92020 -10.78004 -10.75518 -10.74104 -10.45049 -10.21783 -10.09673 -9.65197 -9.57746 -8.97826 -8.91903 -8.81119 -8.29522 -8.03357 -5.94384 -3.94239 2.93192 3.36050 3.40412 3.42190 3.43095 4.28968 4.49038 4.53527 4.60283 4.87278 5.11529 5.28434 5.36163 5.37138 5.37924 5.41468 5.51735 5.54605 5.60596 5.73366 5.78099 5.82423 5.89768 5.90183 5.98279 6.05560 6.11605 6.25095 6.31345 6.38159 6.56315 6.58546 6.71325 6.83488 6.86830 7.24249 7.27111 7.29230 7.44010 7.66758 7.70877 7.74439 7.88274 8.06075 8.48310 8.51051 9.10916 9.68412 11.17272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.004262 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.873552 B = 6568.774073 C = 7326.274415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.729 5.729 3 C 0.551 3.449 4 O -0.548 6.548 5 C -0.107 4.107 6 H 0.086 0.914 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.152 4.152 10 C 0.096 3.904 11 H 0.085 0.915 12 N -0.681 5.681 13 C 0.072 3.928 14 C -0.057 4.057 15 C -0.129 4.129 16 C -0.113 4.113 17 C 0.035 3.965 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.887 3.113 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.398 0.602 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.347 0.653 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.014 0.986 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 0.231 -20.066 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.379 5.379 3 C 0.337 3.663 4 O -0.425 6.425 5 C -0.129 4.129 6 H 0.104 0.896 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.192 4.192 10 C -0.015 4.015 11 H 0.103 0.897 12 N -0.313 5.313 13 C -0.057 4.057 14 C -0.057 4.057 15 C -0.186 4.186 16 C -0.170 4.170 17 C -0.002 4.002 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.204 1.204 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.490 0.306 -20.042 20.198 hybrid contribution 0.076 0.245 1.184 1.211 sum 2.566 0.551 -18.858 19.040 Atomic orbital electron populations 1.21443 0.80177 1.01653 1.01991 1.45639 1.07342 1.08644 1.76268 1.19991 0.89205 0.83355 0.73724 1.90636 1.70196 1.31465 1.50178 1.22080 0.92772 1.00445 0.97612 0.89574 1.22370 0.97852 0.97271 0.97696 1.22399 0.97275 1.01141 0.94923 1.23123 1.00477 0.98555 0.97009 1.22139 0.91343 0.97504 0.90516 0.89704 1.60668 1.29685 1.32915 1.08055 1.22109 0.97182 0.99458 0.86925 1.20609 0.93626 0.95048 0.96467 1.21758 1.01361 0.96154 0.99333 1.21568 0.98349 0.98015 0.99078 1.19108 0.96436 0.96164 0.88542 1.21203 0.96734 1.43372 0.93140 0.92406 1.25004 0.95524 0.95645 0.98363 1.69957 1.23335 1.45693 1.14852 0.86735 0.83172 0.78450 0.80096 1.20338 1.21450 1.20358 0.92999 0.91285 0.91995 0.76957 0.89720 0.91664 0.91501 0.91508 0.91428 0.91203 0.83141 0.91766 0.95786 0.94718 0.91847 0.94192 0.94417 0.92890 0.93927 0.96793 0.96985 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.70 59.85 0.64 1.60 16 2 N -0.73 -7.90 5.71 -67.08 -0.38 -8.29 16 3 C 0.55 7.16 5.43 -10.98 -0.06 7.10 16 4 O -0.55 -9.12 15.54 5.56 0.09 -9.04 16 5 C -0.11 -1.13 3.30 -90.54 -0.30 -1.43 16 6 H 0.09 0.71 8.13 -51.93 -0.42 0.29 16 7 C -0.11 -1.14 6.32 -25.07 -0.16 -1.30 16 8 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 9 C -0.15 -1.69 6.39 -25.08 -0.16 -1.85 16 10 C 0.10 1.14 3.21 -66.48 -0.21 0.92 16 11 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16 12 N -0.68 -9.90 3.92 -105.42 -0.41 -10.32 16 13 C 0.07 1.22 4.47 -3.82 -0.02 1.21 16 14 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 15 C -0.13 -2.52 7.89 37.16 0.29 -2.23 16 16 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 17 C 0.03 0.89 4.04 -27.89 -0.11 0.77 16 18 C -0.51 -13.97 7.65 -34.45 -0.26 -14.23 16 19 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.40 3.34 8.82 -40.82 -0.36 2.98 16 30 H 0.08 1.03 6.93 -51.93 -0.36 0.67 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.87 7.58 -51.93 -0.39 0.48 16 36 H 0.35 5.57 5.90 -39.30 -0.23 5.33 16 37 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 38 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 39 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 40 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 44 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -31.31 362.06 -8.47 -39.78 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.52 Total: 4.26 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.41 Total: -12.38 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.06 Total: -44.84 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.31 -8.47 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.848 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds