Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99828 * 2 1 4 4 O 1.21283 * 120.00222 * 0.28168 * 3 2 1 5 5 C 1.50703 * 120.00290 * 180.27728 * 3 2 1 6 6 H 1.09000 * 110.01458 * 301.39513 * 5 3 2 7 7 C 1.54271 * 110.03089 * 62.83426 * 5 3 2 8 8 C 1.54883 * 104.19377 * 95.67609 * 7 5 3 9 9 C 1.54889 * 102.75045 * 37.94252 * 8 7 5 10 10 C 1.53867 * 110.03621 * 180.02562 * 5 3 2 11 11 H 1.09008 * 110.03246 * 359.97438 * 10 5 3 12 12 N 1.46891 * 110.03534 * 121.38182 * 10 5 3 13 13 C 1.46904 * 111.00254 * 205.00114 * 12 10 5 14 14 C 1.52999 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47027 * 299.99812 * 14 13 12 16 16 C 1.52999 * 109.47379 * 59.99952 * 14 13 12 17 17 C 1.53002 * 109.46857 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46980 * 179.97438 * 17 14 13 19 19 H 1.07995 * 120.00435 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00040 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00030 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00285 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46938 * 59.99753 * 22 20 18 24 24 H 1.48497 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47156 * 300.00198 * 22 20 18 26 26 H 1.09004 * 109.46963 * 299.72135 * 1 2 3 27 27 H 1.08994 * 109.47567 * 59.72287 * 1 2 3 28 28 H 1.09001 * 109.47007 * 179.72339 * 1 2 3 29 29 H 0.97001 * 120.00384 * 180.28447 * 2 1 3 30 30 H 1.08999 * 110.48573 * 214.35699 * 7 5 3 31 31 H 1.09003 * 110.48257 * 336.99744 * 7 5 3 32 32 H 1.09000 * 110.75944 * 279.62893 * 8 7 5 33 33 H 1.08997 * 110.75637 * 156.25865 * 8 7 5 34 34 H 1.09002 * 110.48654 * 203.37532 * 9 8 7 35 35 H 1.09004 * 110.59566 * 80.78782 * 9 8 7 36 36 H 1.00904 * 111.00483 * 81.04643 * 12 10 5 37 37 H 1.09001 * 109.46983 * 300.00150 * 13 12 10 38 38 H 1.08998 * 109.47322 * 59.99605 * 13 12 10 39 39 H 1.08996 * 109.47249 * 60.00044 * 15 14 13 40 40 H 1.09004 * 109.47214 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47212 * 299.99808 * 15 14 13 42 42 H 1.09001 * 109.46977 * 59.99751 * 16 14 13 43 43 H 1.09004 * 109.47020 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.46853 * 299.99928 * 16 14 13 45 45 H 1.08993 * 109.47448 * 299.99849 * 17 14 13 46 46 H 1.09000 * 109.47435 * 60.00159 * 17 14 13 47 47 H 0.96999 * 120.00057 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0052 5 6 3.6458 1.1673 -0.0063 6 1 4.0226 0.6317 0.8650 7 6 4.1689 0.5088 -1.2996 8 6 4.4344 1.7008 -2.2522 9 6 4.9978 2.7825 -1.2975 10 6 4.1729 2.6129 -0.0044 11 1 3.3386 3.3146 0.0007 12 7 5.0254 2.8362 1.1708 13 6 5.0574 4.2589 1.5354 14 6 5.9537 4.4514 2.7603 15 6 5.3991 3.6374 3.9310 16 6 7.3712 3.9763 2.4350 17 6 5.9876 5.9333 3.1396 18 6 6.8699 6.1229 4.3465 19 1 7.3573 5.2716 4.7982 20 6 7.0540 7.3831 4.8748 21 7 6.4600 8.4198 4.3251 22 14 8.1470 7.6181 6.3713 23 1 9.5229 7.1564 6.0566 24 1 8.1800 9.0563 6.7393 25 1 7.6076 6.8282 7.5072 26 1 -0.3633 0.5095 0.8925 27 1 -0.3634 0.5181 -0.8874 28 1 -0.3633 -1.0277 -0.0050 29 1 1.9500 -0.8400 -0.0042 30 1 5.0924 -0.0361 -1.1037 31 1 3.4148 -0.1559 -1.7211 32 1 3.5075 2.0392 -2.7153 33 1 5.1707 1.4331 -3.0100 34 1 4.8487 3.7772 -1.7176 35 1 6.0555 2.6071 -1.1007 36 1 5.9571 2.4820 1.0143 37 1 5.4530 4.8388 0.7015 38 1 4.0476 4.5976 1.7667 39 1 5.3752 2.5818 3.6606 40 1 6.0373 3.7749 4.8039 41 1 4.3892 3.9760 4.1629 42 1 7.7663 4.5562 1.6009 43 1 8.0095 4.1130 3.3079 44 1 7.3473 2.9207 2.1645 45 1 6.3829 6.5129 2.3055 46 1 4.9779 6.2723 3.3713 47 1 6.5892 9.3063 4.6970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345840212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = -64.227023 kcal Electronic energy + Delta-G solvation = -23158.229125 eV Core-core repulsion = 19953.609918 eV Total energy + Delta-G solvation = -3204.619208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35869 -38.09632 -36.67940 -34.76337 -33.26833 -31.86968 -29.82175 -27.56692 -26.66688 -26.54690 -26.26593 -24.65923 -22.39696 -21.65177 -20.73389 -19.65600 -18.01450 -17.24433 -16.26376 -16.12921 -15.99254 -15.08731 -14.93854 -14.57041 -14.28586 -13.88733 -13.65136 -13.55789 -12.94782 -12.81190 -12.71912 -12.54552 -12.11770 -11.96577 -11.80359 -11.53863 -11.29144 -11.23176 -10.97905 -10.90093 -10.84604 -10.73885 -10.62951 -10.42418 -10.19217 -10.07470 -9.80102 -9.61658 -9.30324 -8.94661 -8.77161 -8.26410 -7.98010 -5.90926 -3.91074 2.60287 3.05677 3.37835 3.42405 3.44521 4.35407 4.40142 4.50297 4.54847 4.84567 4.86520 5.05820 5.26606 5.27347 5.44372 5.45068 5.48079 5.52851 5.56775 5.62592 5.64580 5.80661 5.81477 5.88184 5.99763 6.04486 6.09913 6.17357 6.29751 6.38646 6.43225 6.59914 6.71878 6.85772 6.88940 7.27705 7.29838 7.31610 7.32919 7.49929 7.75637 7.80686 7.93289 8.09748 8.14224 8.54063 9.14274 9.71285 11.20750 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.003424 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.893370 B = 8176.118082 C = 8571.627871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.523 3.477 4 O -0.533 6.533 5 C -0.106 4.106 6 H 0.111 0.889 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.151 4.151 10 C 0.089 3.911 11 H 0.103 0.897 12 N -0.680 5.680 13 C 0.072 3.928 14 C -0.059 4.059 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.400 0.600 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.337 0.663 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 -20.110 -12.662 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.309 3.691 4 O -0.408 6.408 5 C -0.128 4.128 6 H 0.129 0.871 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.191 4.191 10 C -0.022 4.022 11 H 0.121 0.879 12 N -0.310 5.310 13 C -0.056 4.056 14 C -0.059 4.059 15 C -0.172 4.172 16 C -0.185 4.185 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.203 1.203 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.461 -19.283 -12.160 23.987 hybrid contribution 1.297 0.223 0.143 1.324 sum -6.164 -19.060 -12.017 23.360 Atomic orbital electron populations 1.21509 0.79901 1.01921 1.02347 1.45798 1.07580 1.08820 1.77018 1.20651 0.90346 0.83322 0.74771 1.90688 1.70253 1.31280 1.48628 1.21943 0.91001 0.99523 1.00379 0.87129 1.22385 1.01212 0.97654 0.94023 1.22436 1.00936 0.95270 0.97370 1.23128 0.99707 0.99370 0.96872 1.22205 0.96983 0.94898 0.88131 0.87924 1.60612 1.16063 1.18957 1.35414 1.22110 1.00443 0.86104 0.96991 1.20633 0.93014 0.99260 0.93016 1.21589 0.99962 0.97812 0.97882 1.21760 0.97591 0.97653 1.01488 1.19114 0.97043 0.88029 0.96173 1.21209 1.28079 0.92729 1.12486 0.92374 1.25019 0.96149 0.96308 0.97134 1.69962 1.43830 0.98997 1.40973 0.86731 0.81189 0.76889 0.83612 1.20394 1.21468 1.20329 0.92217 0.92412 0.90892 0.76615 0.90442 0.91553 0.91526 0.91427 0.91397 0.91343 0.84367 0.95816 0.91518 0.94000 0.92793 0.94204 0.94138 0.91813 0.94882 0.96935 0.96683 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.70 59.85 0.64 1.31 16 2 N -0.74 -6.32 5.41 -67.08 -0.36 -6.69 16 3 C 0.52 6.43 7.07 -10.98 -0.08 6.35 16 4 O -0.53 -8.95 15.21 5.55 0.08 -8.87 16 5 C -0.11 -1.14 3.09 -90.65 -0.28 -1.42 16 6 H 0.11 1.14 7.92 -51.93 -0.41 0.73 16 7 C -0.11 -0.91 6.35 -25.07 -0.16 -1.07 16 8 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 9 C -0.15 -1.72 6.46 -25.05 -0.16 -1.89 16 10 C 0.09 1.19 2.83 -66.58 -0.19 1.00 16 11 H 0.10 1.70 6.06 -51.92 -0.31 1.38 16 12 N -0.68 -10.08 5.38 -105.52 -0.57 -10.64 16 13 C 0.07 1.31 4.48 -3.82 -0.02 1.30 16 14 C -0.06 -1.21 0.60 -154.51 -0.09 -1.30 16 15 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 16 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 17 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -14.13 7.65 -34.44 -0.26 -14.39 16 19 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.40 2.17 8.72 -40.82 -0.36 1.81 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.44 7.50 -51.93 -0.39 0.05 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 36 H 0.34 4.62 6.15 -39.29 -0.24 4.38 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 39 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 40 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 44 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.73 362.82 -8.51 -41.23 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.45 Total: 2.53 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.39 Total: -13.28 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.19 Total: -43.98 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.73 -8.51 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.993 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds