Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00285 * 2 1 4 4 O 1.21288 * 119.99906 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00286 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.01903 * 58.60979 * 5 3 2 7 7 C 1.54276 * 110.07009 * 297.19377 * 5 3 2 8 8 C 1.54888 * 104.19429 * 264.29938 * 7 5 3 9 9 C 1.54958 * 102.78034 * 322.08413 * 8 7 5 10 10 C 1.53866 * 110.03427 * 180.02562 * 5 3 2 11 11 H 1.08999 * 110.03852 * 359.97438 * 10 5 3 12 12 N 1.46901 * 110.03058 * 238.61463 * 10 5 3 13 13 C 1.46907 * 111.00064 * 155.68879 * 12 10 5 14 14 C 1.52996 * 109.47007 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47350 * 60.00124 * 14 13 12 16 16 C 1.53004 * 109.47302 * 299.99646 * 14 13 12 17 17 C 1.52998 * 109.46929 * 180.02562 * 14 13 12 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 14 13 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 14 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 14 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47483 * 269.99808 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00322 * 22 20 18 25 25 H 1.48507 * 109.46904 * 150.00145 * 22 20 18 26 26 H 1.09003 * 109.46628 * 299.99524 * 1 2 3 27 27 H 1.08994 * 109.47009 * 59.99487 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99557 * 180.02562 * 2 1 3 30 30 H 1.08995 * 110.48824 * 22.98465 * 7 5 3 31 31 H 1.09000 * 110.48436 * 145.49183 * 7 5 3 32 32 H 1.09005 * 110.75372 * 80.37561 * 8 7 5 33 33 H 1.08999 * 110.75560 * 203.73934 * 8 7 5 34 34 H 1.08998 * 110.47893 * 279.23550 * 9 8 7 35 35 H 1.09002 * 110.52873 * 156.56783 * 9 8 7 36 36 H 1.00902 * 111.00171 * 279.64498 * 12 10 5 37 37 H 1.09000 * 109.46801 * 60.00152 * 13 12 10 38 38 H 1.09002 * 109.46963 * 300.00066 * 13 12 10 39 39 H 1.09002 * 109.47144 * 179.97438 * 15 14 13 40 40 H 1.08995 * 109.46867 * 299.99830 * 15 14 13 41 41 H 1.08994 * 109.47054 * 59.99763 * 15 14 13 42 42 H 1.09000 * 109.47381 * 300.00659 * 16 14 13 43 43 H 1.09005 * 109.46541 * 60.00604 * 16 14 13 44 44 H 1.09001 * 109.47046 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.47671 * 60.00109 * 17 14 13 46 46 H 1.09006 * 109.47297 * 299.99829 * 17 14 13 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0187 0.6339 -0.8751 7 6 4.1759 0.5046 1.2880 8 6 4.4467 1.6937 2.2427 9 6 5.0047 2.7795 1.2883 10 6 4.1730 2.6126 0.0002 11 1 3.3389 3.3143 0.0005 12 7 5.0202 2.8399 -1.1782 13 6 5.0639 4.2660 -1.5281 14 6 5.9531 4.4625 -2.7575 15 6 5.3820 3.6663 -3.9326 16 6 7.3682 3.9700 -2.4474 17 6 5.9991 5.9479 -3.1215 18 6 6.8755 6.1416 -4.3321 19 1 7.3524 5.2904 -4.7953 20 6 7.0685 7.4053 -4.8484 21 7 6.4882 8.4419 -4.2841 22 14 8.1554 7.6454 -6.3485 23 1 9.5557 7.8796 -5.9129 24 1 8.0986 6.4305 -7.2005 25 1 7.6760 8.8172 -7.1247 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9500 -0.8401 -0.0004 30 1 3.4241 -0.1613 1.7115 31 1 5.0970 -0.0417 1.0850 32 1 3.5222 2.0308 2.7118 33 1 5.1870 1.4236 2.9958 34 1 6.0611 2.6030 1.0861 35 1 4.8571 3.7730 1.7116 36 1 5.9494 2.4750 -1.0314 37 1 5.4703 4.8333 -0.6908 38 1 4.0559 4.6168 -1.7495 39 1 6.0154 3.8067 -4.8086 40 1 5.3497 2.6083 -3.6730 41 1 4.3740 4.0172 -4.1535 42 1 7.7750 4.5372 -1.6102 43 1 7.3358 2.9118 -2.1879 44 1 8.0016 4.1096 -3.3235 45 1 6.4062 6.5148 -2.2843 46 1 4.9911 6.2992 -3.3423 47 1 5.9240 8.3172 -3.5049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345840214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = -68.135705 kcal Electronic energy + Delta-G solvation = -23198.267472 eV Core-core repulsion = 19993.478771 eV Total energy + Delta-G solvation = -3204.788701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40390 -38.17230 -36.78462 -34.80089 -33.46124 -31.93326 -29.86494 -27.46220 -26.63041 -26.44492 -26.29092 -24.62392 -22.44559 -21.71731 -20.78312 -19.70540 -18.28002 -17.34287 -16.41382 -16.25837 -16.02857 -15.17076 -14.97136 -14.47016 -14.25574 -13.86419 -13.66466 -13.61039 -13.13629 -12.93965 -12.77209 -12.57813 -12.21069 -12.07681 -11.63387 -11.52515 -11.31999 -11.27087 -11.05103 -11.01231 -10.87724 -10.83343 -10.66716 -10.49791 -10.08190 -9.96583 -9.81535 -9.72897 -9.33837 -9.21129 -8.34116 -8.22565 -8.05262 -6.24511 -3.91931 2.56191 3.01916 3.48001 3.52059 3.67330 4.30081 4.35290 4.47238 4.62191 4.79398 4.82911 5.02209 5.22046 5.24394 5.40505 5.43095 5.47613 5.50805 5.52935 5.58244 5.59644 5.72565 5.74664 5.80930 5.92056 5.97762 6.04004 6.13084 6.22646 6.30880 6.33989 6.50188 6.62784 6.76131 6.81520 7.16962 7.19371 7.25049 7.27160 7.40710 7.49691 7.64556 7.74635 8.10256 8.35609 8.58569 9.00513 9.78807 11.15529 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.003433 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.212654 B = 8154.524827 C = 8546.199494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.523 3.477 4 O -0.533 6.533 5 C -0.106 4.106 6 H 0.111 0.889 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.152 4.152 10 C 0.089 3.911 11 H 0.103 0.897 12 N -0.679 5.679 13 C 0.071 3.929 14 C -0.052 4.052 15 C -0.114 4.114 16 C -0.127 4.127 17 C 0.020 3.980 18 C -0.586 4.586 19 H 0.053 0.947 20 C 0.011 3.989 21 N -0.918 5.918 22 Si 1.068 2.932 23 H -0.290 1.290 24 H -0.289 1.289 25 H -0.286 1.286 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.401 0.599 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.337 0.663 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.003 0.997 46 H 0.005 0.995 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 -20.800 12.489 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.309 3.691 4 O -0.409 6.409 5 C -0.128 4.128 6 H 0.129 0.871 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.191 4.191 10 C -0.022 4.022 11 H 0.121 0.879 12 N -0.310 5.310 13 C -0.057 4.057 14 C -0.052 4.052 15 C -0.172 4.172 16 C -0.184 4.184 17 C -0.017 4.017 18 C -0.625 4.625 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.555 5.555 22 Si 0.897 3.103 23 H -0.217 1.217 24 H -0.215 1.215 25 H -0.212 1.212 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.792 -19.020 10.970 22.983 hybrid contribution 0.103 -1.209 1.778 2.153 sum -6.689 -20.229 12.748 24.829 Atomic orbital electron populations 1.21513 0.79859 1.01960 1.02352 1.45794 1.07606 1.08808 1.76966 1.20634 0.90318 0.83339 0.74784 1.90688 1.70252 1.31289 1.48671 1.21934 0.91037 0.99404 1.00465 0.87125 1.22384 1.01227 0.97640 0.94023 1.22449 1.00964 0.95224 0.97363 1.23128 0.99695 0.99367 0.96907 1.22194 0.96961 0.94985 0.88078 0.87938 1.60603 1.16612 1.18037 1.35746 1.22115 1.00329 0.86314 0.96969 1.20489 0.93234 0.98471 0.93042 1.21579 0.99836 0.97887 0.97867 1.21753 0.97440 0.97657 1.01569 1.19250 0.96472 0.89511 0.96491 1.22051 1.31425 0.95285 1.13719 0.92901 1.25780 0.98549 0.92577 1.02317 1.70739 1.30311 1.32188 1.22297 0.83557 0.75732 0.75465 0.75527 1.21673 1.21545 1.21176 0.92389 0.92220 0.90851 0.76595 0.91505 0.90418 0.91505 0.91381 0.91345 0.91402 0.84320 0.95896 0.91603 0.92628 0.93869 0.94309 0.94242 0.94749 0.91656 0.97912 0.97636 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.27 5.41 -67.08 -0.36 -6.64 16 3 C 0.52 6.40 7.07 -10.99 -0.08 6.32 16 4 O -0.53 -8.93 15.21 5.55 0.08 -8.84 16 5 C -0.11 -1.13 3.09 -90.65 -0.28 -1.41 16 6 H 0.11 1.14 7.92 -51.93 -0.41 0.72 16 7 C -0.11 -0.91 6.35 -25.07 -0.16 -1.07 16 8 C -0.12 -1.12 6.91 -24.70 -0.17 -1.29 16 9 C -0.15 -1.72 6.43 -25.05 -0.16 -1.88 16 10 C 0.09 1.18 2.82 -66.62 -0.19 0.99 16 11 H 0.10 1.69 6.07 -51.93 -0.32 1.37 16 12 N -0.68 -10.08 5.38 -105.56 -0.57 -10.65 16 13 C 0.07 1.30 4.47 -3.82 -0.02 1.28 16 14 C -0.05 -1.07 0.60 -154.51 -0.09 -1.17 16 15 C -0.11 -2.32 8.07 37.16 0.30 -2.02 16 16 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 17 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 18 C -0.59 -16.52 7.65 -34.44 -0.26 -16.79 16 19 H 0.05 1.46 5.68 -52.48 -0.30 1.16 16 20 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 21 N -0.92 -28.74 13.65 55.43 0.76 -27.99 16 22 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.40 2.14 8.72 -40.82 -0.36 1.78 16 30 H 0.07 0.44 7.51 -51.93 -0.39 0.05 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.34 4.63 6.16 -39.29 -0.24 4.39 16 37 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 39 H 0.05 1.20 6.62 -51.93 -0.34 0.86 16 40 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 44 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 45 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 46 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 47 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -33.44 361.48 -8.49 -41.93 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.40 Total: 3.17 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.37 Total: -17.19 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.17 Total: -45.27 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.44 -8.49 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345840214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.208 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds