Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47268 * 2 1 4 4 C 1.52994 * 109.46969 * 240.00113 * 2 1 3 5 5 C 1.50698 * 109.47363 * 60.00279 * 4 2 1 6 6 H 1.07996 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00133 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00452 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99943 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47415 * 90.00125 * 9 7 5 11 11 H 1.48503 * 109.47167 * 210.00242 * 9 7 5 12 12 H 1.48498 * 109.47123 * 329.99979 * 9 7 5 13 13 C 1.53001 * 109.47159 * 119.99884 * 2 1 3 14 14 N 1.46498 * 109.47428 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00211 * 179.97438 * 14 13 2 16 16 O 1.21586 * 120.00048 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99940 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47237 * 179.72043 * 18 17 15 20 20 C 1.54258 * 110.03455 * 292.90744 * 19 18 17 21 21 C 1.54967 * 104.16246 * 217.13741 * 20 19 18 22 22 C 1.54887 * 102.77367 * 37.88475 * 21 20 19 23 23 C 1.53874 * 110.03277 * 175.68586 * 19 18 17 24 24 H 1.09003 * 109.46670 * 300.00346 * 1 2 3 25 25 H 1.08997 * 109.47084 * 59.99294 * 1 2 3 26 26 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46792 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46931 * 300.00162 * 3 2 1 29 29 H 1.09003 * 109.47103 * 59.99917 * 3 2 1 30 30 H 1.09007 * 109.47198 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47543 * 299.99584 * 4 2 1 32 32 H 0.96993 * 120.00440 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47065 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.46892 * 59.99852 * 13 2 1 35 35 H 0.97004 * 119.99747 * 0.02562 * 14 13 2 36 36 H 0.97005 * 120.00161 * 359.72198 * 17 15 14 37 37 H 1.09001 * 109.46512 * 299.72412 * 18 17 15 38 38 H 1.08998 * 109.47174 * 59.71534 * 18 17 15 39 39 H 1.09006 * 110.01511 * 54.29951 * 19 18 17 40 40 H 1.09005 * 110.48463 * 335.78619 * 20 19 18 41 41 H 1.09006 * 110.48910 * 98.42335 * 20 19 18 42 42 H 1.09007 * 110.71710 * 279.57479 * 21 20 19 43 43 H 1.09001 * 110.92470 * 156.29521 * 21 20 19 44 44 H 1.09006 * 110.48348 * 203.40513 * 22 21 20 45 45 H 1.08996 * 110.59816 * 80.82043 * 22 21 20 46 46 H 1.09001 * 110.03624 * 238.57082 * 23 19 18 47 47 H 1.09006 * 110.03109 * 359.95719 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 2.6281 -1.5502 -3.8527 9 14 1.2480 0.3987 -5.2571 10 1 2.2253 1.4411 -5.6612 11 1 1.0837 -0.5805 -6.3614 12 1 -0.0606 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2493 14 7 1.5518 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5759 -1.4799 3.7811 17 7 1.4273 0.1437 4.7699 18 6 1.7813 -0.3568 6.1006 19 6 1.1534 0.5424 7.1674 20 6 1.8032 1.9409 7.1290 21 6 1.8801 2.3642 8.6177 22 6 2.2339 1.0369 9.3333 23 6 1.4266 -0.0322 8.5684 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8624 -1.8816 -4.7336 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.9938 0.7579 2.3564 36 1 0.8730 0.9347 4.6810 37 1 1.4079 -1.3742 6.2171 38 1 2.8653 -0.3525 6.2139 39 1 0.0793 0.6249 7.0007 40 1 2.8020 1.8856 6.6961 41 1 1.1802 2.6357 6.5656 42 1 0.9176 2.7435 8.9610 43 1 2.6633 3.1066 8.7713 44 1 1.9253 1.0729 10.3782 45 1 3.3022 0.8340 9.2588 46 1 0.4852 -0.2276 9.0820 47 1 2.0059 -0.9521 8.4883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350987030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = -71.585628 kcal Electronic energy + Delta-G solvation = -22370.771100 eV Core-core repulsion = 19165.832799 eV Total energy + Delta-G solvation = -3204.938301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.96358 -38.62349 -37.12829 -34.40545 -33.51549 -32.05182 -29.99486 -29.00687 -27.09318 -26.48702 -26.18551 -24.41443 -22.70959 -21.12356 -20.61332 -20.01610 -18.63258 -17.59023 -16.65972 -16.27140 -15.74806 -15.38834 -15.18002 -14.56883 -14.26479 -14.00114 -13.94538 -13.64879 -13.42636 -13.00522 -12.72214 -12.58709 -12.06204 -12.04801 -11.58748 -11.45950 -11.40592 -11.17628 -11.08195 -10.99690 -10.96436 -10.84105 -10.77560 -10.61682 -10.37212 -10.23207 -9.99043 -9.84930 -9.17903 -9.11145 -8.90693 -8.49350 -8.34367 -5.98337 -3.99591 2.91634 3.31721 3.38726 3.40463 3.46816 4.21779 4.23557 4.34673 4.45527 4.55662 4.90017 5.07276 5.11191 5.15409 5.29015 5.34076 5.37090 5.47225 5.52810 5.57738 5.67025 5.67363 5.70213 5.74675 5.78002 5.89754 5.98498 6.06298 6.20572 6.25121 6.31698 6.44594 6.53375 6.63371 6.65254 6.84291 7.08484 7.09984 7.10361 7.18941 7.66474 7.79094 8.00492 8.24178 8.42398 8.84814 9.05263 9.63340 11.13131 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044650 B = 0.002614 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.952196 B =10709.100010 C =10996.191196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.738 5.738 15 C 0.699 3.301 16 O -0.596 6.596 17 N -0.752 5.752 18 C 0.147 3.853 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 7.869 23.887 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.024 3.976 14 N -0.393 5.393 15 C 0.398 3.602 16 O -0.474 6.474 17 N -0.408 5.408 18 C 0.023 3.977 19 C -0.124 4.124 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.156 4.156 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.522 6.797 23.836 25.035 hybrid contribution -0.814 1.118 -1.052 1.738 sum -4.336 7.915 22.783 24.506 Atomic orbital electron populations 1.21749 0.95337 1.01134 1.00106 1.20907 0.95431 0.95845 0.95063 1.21751 1.00529 0.95930 1.00099 1.19095 0.96400 0.95260 0.89455 1.21179 1.31115 1.12035 0.90520 0.92283 1.25019 0.95368 0.95089 0.99083 1.69964 1.36968 1.23031 1.23414 0.86647 0.79155 0.79397 0.83087 1.20797 1.21358 1.19976 1.21474 0.98630 0.95623 0.81922 1.45368 1.56156 1.33159 1.04597 1.16034 0.80510 0.83019 0.80616 1.90912 1.42826 1.27615 1.86050 1.45124 1.57550 1.33087 1.05053 1.21290 0.99752 0.96989 0.79706 1.22041 1.00413 0.95199 0.94718 1.22492 1.01213 0.95524 0.96708 1.22508 1.01382 0.97203 0.95216 1.22364 1.00215 0.94775 0.98950 1.22119 1.00462 0.98809 0.94172 0.95327 0.91513 0.93380 0.93385 0.91519 0.95327 0.96303 0.96296 0.93051 0.92077 0.92082 0.77237 0.77380 0.91887 0.91730 0.90425 0.91095 0.91633 0.91599 0.91620 0.91756 0.91521 0.91514 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.67 16 14 N -0.74 -11.06 4.96 -65.23 -0.32 -11.39 16 15 C 0.70 11.06 8.57 -86.92 -0.74 10.31 16 16 O -0.60 -12.11 16.34 5.29 0.09 -12.02 16 17 N -0.75 -8.46 5.40 -65.22 -0.35 -8.81 16 18 C 0.15 1.49 4.73 -4.04 -0.02 1.47 16 19 C -0.10 -0.75 2.97 -89.51 -0.27 -1.02 16 20 C -0.12 -0.83 6.05 -25.03 -0.15 -0.98 16 21 C -0.13 -0.76 6.91 -24.70 -0.17 -0.93 16 22 C -0.13 -0.76 6.83 -25.07 -0.17 -0.93 16 23 C -0.12 -0.76 6.46 -25.61 -0.17 -0.93 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.90 6.18 -40.82 -0.25 4.65 16 36 H 0.39 3.33 8.35 -40.82 -0.34 2.99 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.47 7.67 -51.93 -0.40 0.08 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -31.64 364.63 -9.61 -41.24 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.56 Total: 2.33 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.66 Total: -7.28 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.06 Total: -46.00 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.64 -9.61 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350987030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.341 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds