Wall clock time and date at job start Tue Mar 31 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 C 1.53004 * 109.47330 * 120.00301 * 2 1 3 5 5 C 1.52996 * 109.46956 * 67.57086 * 4 2 1 6 6 H 1.09004 * 109.99552 * 53.41307 * 5 4 2 7 7 C 1.54319 * 109.88554 * 292.31111 * 5 4 2 8 8 C 1.55161 * 102.94615 * 218.38876 * 7 5 4 9 9 C 1.54918 * 101.57649 * 35.50436 * 8 7 5 10 10 N 1.47025 * 109.88117 * 174.50029 * 5 4 2 11 11 C 1.34769 * 125.65505 * 298.31938 * 10 5 4 12 12 O 1.21596 * 119.99860 * 4.88584 * 11 10 5 13 13 N 1.34777 * 120.00576 * 184.88984 * 11 10 5 14 14 C 1.46498 * 120.00235 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46939 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47029 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47414 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99637 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00306 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00243 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46933 * 60.00085 * 21 19 17 23 23 H 1.48494 * 109.47259 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47249 * 300.00719 * 21 19 17 25 25 H 1.09011 * 109.47059 * 165.82633 * 1 2 3 26 26 H 1.08995 * 109.47137 * 285.82037 * 1 2 3 27 27 H 1.08998 * 109.47703 * 45.82536 * 1 2 3 28 28 H 1.09004 * 109.47268 * 240.00399 * 2 1 3 29 29 H 1.08994 * 109.47223 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47073 * 300.00642 * 3 2 1 31 31 H 1.09004 * 109.46702 * 60.00052 * 3 2 1 32 32 H 1.08991 * 109.46795 * 307.57010 * 4 2 1 33 33 H 1.09001 * 109.47101 * 187.57129 * 4 2 1 34 34 H 1.08992 * 110.71881 * 336.75912 * 7 5 4 35 35 H 1.09005 * 110.71980 * 99.84932 * 7 5 4 36 36 H 1.08992 * 111.00125 * 153.57416 * 8 7 5 37 37 H 1.08998 * 111.00592 * 277.43093 * 8 7 5 38 38 H 1.08996 * 110.36602 * 81.82527 * 9 8 7 39 39 H 1.08999 * 110.36298 * 204.15005 * 9 8 7 40 40 H 0.97003 * 119.99745 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47326 * 299.99735 * 14 13 11 42 42 H 1.09010 * 109.47004 * 59.99761 * 14 13 11 43 43 H 1.09002 * 109.47041 * 299.99343 * 15 14 13 44 44 H 1.08993 * 109.47133 * 60.00309 * 15 14 13 45 45 H 1.09001 * 109.46837 * 300.00301 * 16 15 14 46 46 H 1.09002 * 109.47326 * 59.99465 * 16 15 14 47 47 H 0.96995 * 119.99929 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6911 -2.2082 1.1577 6 1 2.0578 -2.6199 0.2174 7 6 0.1622 -2.3953 1.2520 8 6 0.0217 -3.6835 2.1055 9 6 1.2093 -3.5357 3.0892 10 7 2.2901 -2.9328 2.2881 11 6 3.6088 -3.0304 2.5484 12 8 4.4097 -2.4183 1.8684 13 7 4.0400 -3.8066 3.5623 14 6 5.4735 -3.9132 3.8449 15 6 5.6903 -4.8485 5.0362 16 6 7.1874 -4.9593 5.3317 17 6 7.4011 -5.8811 6.5046 18 1 6.5538 -6.3415 6.9909 19 6 8.6782 -6.1367 6.9569 20 7 9.7100 -5.5756 6.3650 21 14 8.9430 -7.2786 8.4112 22 1 8.4005 -8.6232 8.0900 23 1 10.3961 -7.3862 8.6980 24 1 8.2429 -6.7340 9.6022 25 1 -0.3634 -0.9965 -0.2517 26 1 -0.3633 0.2802 0.9887 27 1 -0.3634 0.7161 -0.7370 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.5704 -0.2917 2.1340 33 1 3.1215 -0.6055 1.3195 34 1 -0.2998 -1.5465 1.7559 35 1 -0.2708 -2.5365 0.2617 36 1 -0.9285 -3.6966 2.6393 37 1 0.1339 -4.5751 1.4886 38 1 0.9379 -2.8788 3.9156 39 1 1.5148 -4.5124 3.4644 40 1 3.4011 -4.2948 4.1050 41 1 5.9875 -4.3126 2.9707 42 1 5.8716 -2.9263 4.0811 43 1 5.1765 -4.4486 5.9103 44 1 5.2922 -5.8354 4.8004 45 1 7.7017 -5.3589 4.4576 46 1 7.5853 -3.9723 5.5675 47 1 10.6085 -5.7551 6.6834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351502554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:25 Heat of formation + Delta-G solvation = -55.904603 kcal Electronic energy + Delta-G solvation = -22472.860893 eV Core-core repulsion = 19268.602573 eV Total energy + Delta-G solvation = -3204.258321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46779 -38.23107 -35.98412 -35.29068 -33.28703 -31.89547 -30.89703 -30.02568 -27.61259 -26.53630 -25.85466 -23.55207 -22.43539 -21.14361 -20.57308 -20.33808 -19.32371 -17.92546 -16.60661 -16.29282 -15.62597 -15.22266 -15.02151 -14.48892 -14.32757 -14.23211 -14.00450 -13.82632 -13.44453 -13.21306 -12.85039 -12.64139 -12.29125 -12.24775 -12.09192 -11.79383 -11.70320 -11.58027 -11.07866 -11.05112 -10.88521 -10.81526 -10.74528 -10.68288 -10.61331 -10.57613 -9.91531 -9.83139 -9.40664 -9.11836 -8.86925 -8.40223 -8.35295 -6.00106 -4.03268 2.71268 3.32877 3.37598 3.39492 3.39763 4.07452 4.30185 4.43015 4.46709 4.49442 4.73361 4.80084 4.81364 5.10582 5.12344 5.25423 5.35428 5.36388 5.40280 5.45293 5.48478 5.53342 5.58329 5.63339 5.71826 5.75973 5.81270 5.84877 5.88216 5.96905 6.09602 6.18771 6.21665 6.24535 6.39328 6.59811 6.65265 6.88607 7.05326 7.19243 7.65508 7.78904 7.98866 8.15914 8.39810 8.81262 9.03231 9.60663 11.11202 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032146 B = 0.002702 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.818504 B =10360.282562 C =11039.040981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.159 3.841 6 H 0.071 0.929 7 C -0.131 4.131 8 C -0.135 4.135 9 C 0.099 3.901 10 N -0.639 5.639 11 C 0.718 3.282 12 O -0.588 6.588 13 N -0.741 5.741 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.392 0.608 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.609 8.363 -11.348 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.166 4.166 5 C 0.055 3.945 6 H 0.089 0.911 7 C -0.168 4.168 8 C -0.173 4.173 9 C -0.024 4.024 10 N -0.378 5.378 11 C 0.420 3.580 12 O -0.466 6.466 13 N -0.395 5.395 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.674 8.815 -11.812 27.043 hybrid contribution -0.041 -0.894 1.173 1.475 sum -22.715 7.921 -10.639 26.304 Atomic orbital electron populations 1.22311 0.95598 1.02230 1.01499 1.21044 0.95557 0.96268 0.98346 1.21826 1.01319 0.95841 1.01357 1.22083 1.03343 0.93800 0.97381 1.21369 0.91954 0.91977 0.89161 0.91127 1.23108 0.94851 0.98078 1.00799 1.22808 0.97941 0.98618 0.97975 1.22248 0.87555 0.98159 0.94487 1.47674 1.03703 1.56475 1.29920 1.15526 0.80637 0.80353 0.81454 1.90900 1.52981 1.50277 1.52436 1.45431 1.09764 1.50171 1.34163 1.21508 0.77701 1.00613 0.98974 1.21884 1.01942 0.97151 0.94800 1.19021 0.88053 0.97401 0.96846 1.21168 0.92235 1.27816 1.14862 0.92726 1.25031 0.96209 0.96202 0.97034 1.69959 0.98550 1.43705 1.41081 0.86639 0.77010 0.81282 0.82938 1.20256 1.21273 1.20262 0.91513 0.92691 0.93207 0.91218 0.92522 0.92899 0.92879 0.92116 0.89803 0.89933 0.89704 0.89931 0.90603 0.91612 0.90967 0.77395 0.91984 0.91991 0.92828 0.92828 0.96247 0.96245 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 7.73 37.15 0.29 -0.76 16 2 C -0.09 -0.81 2.89 -90.62 -0.26 -1.07 16 3 C -0.15 -1.25 9.14 37.16 0.34 -0.91 16 4 C -0.13 -1.39 4.36 -26.73 -0.12 -1.51 16 5 C 0.16 1.67 2.92 -66.96 -0.20 1.48 16 6 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 7 C -0.13 -0.89 4.46 -24.90 -0.11 -1.00 16 8 C -0.14 -0.88 7.09 -24.58 -0.17 -1.05 16 9 C 0.10 0.86 6.68 -2.52 -0.02 0.85 16 10 N -0.64 -7.91 3.06 -168.69 -0.52 -8.42 16 11 C 0.72 11.85 8.31 -86.93 -0.72 11.13 16 12 O -0.59 -11.95 15.14 5.28 0.08 -11.87 16 13 N -0.74 -11.60 5.52 -65.22 -0.36 -11.96 16 14 C 0.14 2.51 5.67 -4.04 -0.02 2.49 16 15 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.07 0.38 4.93 -51.92 -0.26 0.12 16 26 H 0.05 0.35 7.19 -51.93 -0.37 -0.02 16 27 H 0.05 0.31 8.07 -51.93 -0.42 -0.11 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 34 H 0.08 0.52 6.12 -51.93 -0.32 0.20 16 35 H 0.08 0.47 6.52 -51.93 -0.34 0.13 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.59 7.12 -51.93 -0.37 0.22 16 40 H 0.39 5.09 6.87 -40.82 -0.28 4.81 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -32.82 363.18 -9.86 -42.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.56 Total: -0.24 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.68 Total: -5.92 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.14 Total: -46.72 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.82 -9.86 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351502554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.227 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds