Wall clock time and date at job start Tue Mar 31 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50704 * 119.99778 * 2 1 4 4 C 1.50695 * 119.99781 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47005 * 95.00196 * 4 2 1 6 6 N 1.46902 * 109.46995 * 184.13162 * 5 4 2 7 7 C 1.46903 * 110.99760 * 160.77260 * 6 5 4 8 8 C 1.50703 * 109.46957 * 288.22162 * 7 6 5 9 9 H 1.08000 * 119.99991 * 356.27025 * 8 7 6 10 10 C 1.37879 * 119.99939 * 176.27145 * 8 7 6 11 11 N 1.31513 * 119.99806 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99722 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47337 * 90.00251 * 12 10 8 14 14 H 1.48507 * 109.46957 * 209.99865 * 12 10 8 15 15 H 1.48501 * 109.47656 * 329.99817 * 12 10 8 16 16 C 1.46903 * 111.00015 * 284.72417 * 6 5 4 17 17 C 1.53002 * 109.46836 * 170.00004 * 16 6 5 18 18 N 1.46903 * 109.46836 * 180.02562 * 17 16 6 19 19 C 1.47017 * 110.99539 * 46.32103 * 18 17 16 20 20 C 1.53099 * 109.25085 * 182.34769 * 19 18 17 21 21 O 1.43010 * 109.30023 * 303.21900 * 20 19 18 22 22 C 1.43014 * 113.73682 * 58.64515 * 21 20 19 23 23 C 1.47011 * 111.00062 * 170.00231 * 18 17 16 24 24 H 1.08000 * 120.00259 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99608 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46833 * 269.99378 * 3 2 1 27 27 H 1.08996 * 109.47267 * 30.00296 * 3 2 1 28 28 H 1.08999 * 109.46718 * 150.00087 * 3 2 1 29 29 H 1.09000 * 109.47485 * 335.00354 * 4 2 1 30 30 H 1.09005 * 109.47080 * 215.00372 * 4 2 1 31 31 H 1.09003 * 109.47024 * 64.13406 * 5 4 2 32 32 H 1.08998 * 109.47161 * 304.13239 * 5 4 2 33 33 H 1.09004 * 109.47164 * 48.22022 * 7 6 5 34 34 H 1.08998 * 109.46884 * 168.22276 * 7 6 5 35 35 H 0.97005 * 119.99674 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.46876 * 50.00215 * 16 6 5 37 37 H 1.09000 * 109.47016 * 290.00209 * 16 6 5 38 38 H 1.09004 * 109.46881 * 60.00037 * 17 16 6 39 39 H 1.09001 * 109.47067 * 300.00249 * 17 16 6 40 40 H 1.08997 * 109.47444 * 62.43789 * 19 18 17 41 41 H 1.08996 * 109.54796 * 302.30413 * 19 18 17 42 42 H 1.09001 * 109.50556 * 183.25989 * 20 19 18 43 43 H 1.09003 * 109.50838 * 63.17933 * 20 19 18 44 44 H 1.09004 * 109.50354 * 61.26650 * 22 21 20 45 45 H 1.09002 * 109.51098 * 181.35858 * 22 21 20 46 46 H 1.09004 * 109.50475 * 57.66906 * 23 18 17 47 47 H 1.09003 * 109.50307 * 297.54866 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.0742 -3.0035 -1.4456 7 6 3.0279 -3.6030 -2.7859 8 6 1.6167 -4.0313 -3.0961 9 1 0.8446 -3.9292 -2.3479 10 6 1.3113 -4.5535 -4.3351 11 7 0.0797 -4.9267 -4.6060 12 14 2.6467 -4.7293 -5.6294 13 1 3.2880 -6.0625 -5.5011 14 1 2.0463 -4.5969 -6.9812 15 1 3.6674 -3.6683 -5.4351 16 6 4.4563 -2.9155 -0.9557 17 6 5.0127 -4.3249 -0.7434 18 7 6.3946 -4.2369 -0.2529 19 6 6.5072 -3.2497 0.8306 20 6 7.9700 -3.1479 1.2709 21 8 8.4360 -4.4412 1.6652 22 6 8.3414 -5.4266 0.6330 23 6 6.8823 -5.5522 0.1869 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4745 2.0648 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1986 0.5901 31 1 3.1116 -0.9415 -1.8461 32 1 1.5227 -1.7192 -2.0431 33 1 3.3556 -2.8701 -3.5233 34 1 3.6865 -4.4709 -2.8186 35 1 -0.1350 -5.2944 -5.4776 36 1 4.4730 -2.3722 -0.0109 37 1 5.0686 -2.3896 -1.6881 38 1 4.9960 -4.8682 -1.6882 39 1 4.4003 -4.8508 -0.0109 40 1 5.8941 -3.5652 1.6748 41 1 6.1656 -2.2776 0.4752 42 1 8.0497 -2.4601 2.1127 43 1 8.5749 -2.7802 0.4420 44 1 8.9566 -5.1254 -0.2150 45 1 8.6904 -6.3867 1.0131 46 1 6.8138 -6.2605 -0.6388 47 1 6.2757 -5.9050 1.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352011429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:14 Heat of formation + Delta-G solvation = -18.022863 kcal Electronic energy + Delta-G solvation = -23054.799871 eV Core-core repulsion = 19852.184226 eV Total energy + Delta-G solvation = -3202.615645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66768 -37.75443 -36.07661 -35.01718 -32.49587 -31.34246 -30.08308 -29.12973 -27.30931 -26.94287 -25.27706 -24.13113 -22.36184 -22.04956 -20.39225 -19.54397 -18.08974 -16.96877 -16.61324 -16.18077 -15.37819 -15.20892 -15.12869 -14.75138 -14.58061 -14.47341 -14.06162 -13.63457 -13.46574 -13.40668 -12.85006 -12.61564 -12.38564 -12.31063 -12.13897 -11.78606 -11.54309 -11.48944 -11.29707 -11.25942 -10.89044 -10.71294 -10.60110 -10.49969 -10.29116 -9.96367 -9.84718 -9.73095 -9.29332 -8.75662 -8.56415 -8.32577 -7.41307 -6.05759 -4.02603 2.48387 3.26953 3.34867 3.37111 3.66438 3.83295 4.41024 4.68200 4.83342 4.94194 4.97026 5.06490 5.13190 5.18213 5.24643 5.25632 5.38163 5.46018 5.50085 5.54280 5.63753 5.65513 5.72255 5.73868 5.76290 5.86771 5.90423 5.93870 6.01123 6.10120 6.18611 6.26018 6.30009 6.47098 6.66479 6.84254 6.89890 6.95649 6.95954 7.03342 7.05801 7.15689 7.61276 7.88369 8.01950 8.65449 9.04513 9.56362 11.07416 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.005658 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.304846 B = 4947.959323 C = 7326.981249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.078 4.078 5 C 0.071 3.929 6 N -0.528 5.528 7 C 0.159 3.841 8 C -0.506 4.506 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.053 3.947 17 C 0.058 3.942 18 N -0.538 5.538 19 C 0.012 3.988 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.018 3.982 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.090 0.910 33 H -0.010 1.010 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 6.221 10.965 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.124 4.124 3 C -0.174 4.174 4 C -0.116 4.116 5 C -0.057 4.057 6 N -0.252 5.252 7 C 0.033 3.967 8 C -0.545 4.545 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.539 5.539 12 Si 0.698 3.302 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.076 4.076 17 C -0.069 4.069 18 N -0.264 5.264 19 C -0.116 4.116 20 C -0.013 4.013 21 O -0.307 6.307 22 C -0.012 4.012 23 C -0.111 4.111 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.108 0.892 33 H 0.008 0.992 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.597 5.946 10.917 17.698 hybrid contribution 0.327 0.096 -1.069 1.122 sum 12.924 6.042 9.848 17.335 Atomic orbital electron populations 1.23690 0.95321 1.01719 1.02650 1.21757 0.95501 0.95686 0.99505 1.20848 0.99834 0.94783 1.01887 1.20696 0.99237 0.93750 0.97937 1.21940 0.99808 0.88603 0.95344 1.61886 1.13422 1.21696 1.28176 1.20268 0.98662 0.93712 0.84084 1.21030 0.93312 1.40708 0.99426 0.90128 1.24890 0.95137 0.95203 0.98029 1.69894 1.18229 1.43176 1.22607 0.86930 0.82681 0.79011 0.81572 1.20178 1.21200 1.19205 1.22160 0.90481 0.95539 0.99425 1.22200 0.85730 0.98128 1.00857 1.62286 1.23037 1.07051 1.34028 1.22866 0.97298 0.97975 0.93482 1.22680 0.93421 0.85019 1.00203 1.87954 1.84789 1.19533 1.38473 1.22657 0.95191 0.92308 0.91060 1.22765 0.96440 0.91738 1.00114 0.88133 0.89037 0.91638 0.92298 0.92259 0.90574 0.92518 0.96193 0.89164 0.99212 0.95589 0.92703 0.91614 0.95180 0.89818 0.93657 0.93908 0.89164 0.88700 0.92421 0.92369 0.88618 0.89533 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 13.89 29.01 0.40 -2.35 16 2 C -0.12 -1.74 5.31 -101.07 -0.54 -2.28 16 3 C -0.12 -1.34 10.03 36.01 0.36 -0.98 16 4 C -0.08 -1.22 5.42 -27.88 -0.15 -1.37 16 5 C 0.07 1.33 4.81 -3.82 -0.02 1.31 16 6 N -0.53 -10.65 4.39 -236.06 -1.04 -11.69 16 7 C 0.16 3.77 3.68 -4.97 -0.02 3.75 16 8 C -0.51 -14.17 8.85 -34.44 -0.30 -14.47 16 9 H 0.08 2.47 8.02 -52.49 -0.42 2.05 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 12 Si 0.87 21.39 27.54 -169.99 -4.68 16.71 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.37 6.44 56.52 0.36 -6.01 16 16 C 0.05 0.88 4.06 -3.82 -0.02 0.86 16 17 C 0.06 0.93 5.24 -3.82 -0.02 0.91 16 18 N -0.54 -7.40 4.87 -234.30 -1.14 -8.54 16 19 C 0.01 0.14 4.94 -3.71 -0.02 0.13 16 20 C 0.06 0.68 7.01 37.21 0.26 0.94 16 21 O -0.39 -4.75 10.83 -35.23 -0.38 -5.13 16 22 C 0.06 0.69 7.01 37.21 0.26 0.95 16 23 C 0.02 0.22 5.63 -3.71 -0.02 0.20 16 24 H 0.10 1.49 7.99 -52.49 -0.42 1.07 16 25 H 0.09 1.11 8.04 -52.48 -0.42 0.69 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 28 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 30 H 0.06 0.80 6.85 -51.93 -0.36 0.45 16 31 H 0.02 0.36 8.01 -51.93 -0.42 -0.06 16 32 H 0.09 1.96 7.09 -51.93 -0.37 1.59 16 33 H -0.01 -0.24 6.85 -51.93 -0.36 -0.60 16 34 H 0.03 0.62 5.56 -51.93 -0.29 0.33 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 0.98 4.80 -51.93 -0.25 0.73 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.08 1.49 6.28 -51.93 -0.33 1.16 16 39 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.04 6.05 -51.93 -0.31 0.72 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -30.40 362.89 -9.50 -39.90 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.59 Total: 0.42 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -1.40 Total: -46.84 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.68 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.40 -9.50 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352011429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.880 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds