Wall clock time and date at job start Tue Mar 31 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50704 * 119.99778 * 2 1 4 4 C 1.50695 * 119.99781 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47005 * 95.00196 * 4 2 1 6 6 N 1.46902 * 109.46995 * 184.13162 * 5 4 2 7 7 C 1.46903 * 110.99760 * 160.77260 * 6 5 4 8 8 C 1.50703 * 109.46957 * 288.22162 * 7 6 5 9 9 H 1.08000 * 119.99991 * 356.27025 * 8 7 6 10 10 C 1.37879 * 119.99939 * 176.27145 * 8 7 6 11 11 N 1.31513 * 119.99806 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99722 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47337 * 90.00251 * 12 10 8 14 14 H 1.48507 * 109.46957 * 209.99865 * 12 10 8 15 15 H 1.48501 * 109.47656 * 329.99817 * 12 10 8 16 16 C 1.46903 * 111.00015 * 284.72417 * 6 5 4 17 17 C 1.53002 * 109.46836 * 170.00004 * 16 6 5 18 18 N 1.46903 * 109.46836 * 180.02562 * 17 16 6 19 19 C 1.47017 * 110.99539 * 46.32103 * 18 17 16 20 20 C 1.53099 * 109.25085 * 182.34769 * 19 18 17 21 21 O 1.43010 * 109.30023 * 303.21900 * 20 19 18 22 22 C 1.43014 * 113.73682 * 58.64515 * 21 20 19 23 23 C 1.47011 * 111.00062 * 170.00231 * 18 17 16 24 24 H 1.08000 * 120.00259 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99608 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46833 * 269.99378 * 3 2 1 27 27 H 1.08996 * 109.47267 * 30.00296 * 3 2 1 28 28 H 1.08999 * 109.46718 * 150.00087 * 3 2 1 29 29 H 1.09000 * 109.47485 * 335.00354 * 4 2 1 30 30 H 1.09005 * 109.47080 * 215.00372 * 4 2 1 31 31 H 1.09003 * 109.47024 * 64.13406 * 5 4 2 32 32 H 1.08998 * 109.47161 * 304.13239 * 5 4 2 33 33 H 1.09004 * 109.47164 * 48.22022 * 7 6 5 34 34 H 1.08998 * 109.46884 * 168.22276 * 7 6 5 35 35 H 0.97005 * 119.99674 * 180.02562 * 11 10 8 36 36 H 1.08994 * 109.46876 * 50.00215 * 16 6 5 37 37 H 1.09000 * 109.47016 * 290.00209 * 16 6 5 38 38 H 1.09004 * 109.46881 * 60.00037 * 17 16 6 39 39 H 1.09001 * 109.47067 * 300.00249 * 17 16 6 40 40 H 1.08997 * 109.47444 * 62.43789 * 19 18 17 41 41 H 1.08996 * 109.54796 * 302.30413 * 19 18 17 42 42 H 1.09001 * 109.50556 * 183.25989 * 20 19 18 43 43 H 1.09003 * 109.50838 * 63.17933 * 20 19 18 44 44 H 1.09004 * 109.50354 * 61.26650 * 22 21 20 45 45 H 1.09002 * 109.51098 * 181.35858 * 22 21 20 46 46 H 1.09004 * 109.50475 * 57.66906 * 23 18 17 47 47 H 1.09003 * 109.50307 * 297.54866 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.0742 -3.0035 -1.4456 7 6 3.0279 -3.6030 -2.7859 8 6 1.6167 -4.0313 -3.0961 9 1 0.8446 -3.9292 -2.3479 10 6 1.3113 -4.5535 -4.3351 11 7 0.0797 -4.9267 -4.6060 12 14 2.6467 -4.7293 -5.6294 13 1 3.2880 -6.0625 -5.5011 14 1 2.0463 -4.5969 -6.9812 15 1 3.6674 -3.6683 -5.4351 16 6 4.4563 -2.9155 -0.9557 17 6 5.0127 -4.3249 -0.7434 18 7 6.3946 -4.2369 -0.2529 19 6 6.5072 -3.2497 0.8306 20 6 7.9700 -3.1479 1.2709 21 8 8.4360 -4.4412 1.6652 22 6 8.3414 -5.4266 0.6330 23 6 6.8823 -5.5522 0.1869 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4745 2.0648 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1986 0.5901 31 1 3.1116 -0.9415 -1.8461 32 1 1.5227 -1.7192 -2.0431 33 1 3.3556 -2.8701 -3.5233 34 1 3.6865 -4.4709 -2.8186 35 1 -0.1350 -5.2944 -5.4776 36 1 4.4730 -2.3722 -0.0109 37 1 5.0686 -2.3896 -1.6881 38 1 4.9960 -4.8682 -1.6882 39 1 4.4003 -4.8508 -0.0109 40 1 5.8941 -3.5652 1.6748 41 1 6.1656 -2.2776 0.4752 42 1 8.0497 -2.4601 2.1127 43 1 8.5749 -2.7802 0.4420 44 1 8.9566 -5.1254 -0.2150 45 1 8.6904 -6.3867 1.0131 46 1 6.8138 -6.2605 -0.6388 47 1 6.2757 -5.9050 1.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352011429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:13 Heat of formation + Delta-G solvation = -39.396730 kcal Electronic energy + Delta-G solvation = -23055.726712 eV Core-core repulsion = 19852.184226 eV Total energy + Delta-G solvation = -3203.542486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66127 -39.16956 -37.17141 -36.29277 -34.61303 -32.25450 -31.31419 -30.83506 -28.63927 -28.00916 -26.61278 -25.07814 -24.13883 -23.34149 -21.53472 -20.99118 -19.25795 -19.02370 -17.69962 -17.09965 -16.88951 -16.42968 -16.09984 -16.01177 -15.90731 -15.70813 -15.49033 -15.13161 -14.70951 -14.60325 -14.39704 -14.02069 -13.77636 -13.69528 -13.28345 -12.99164 -12.91374 -12.62508 -12.53126 -12.43164 -12.31913 -12.28591 -11.91990 -11.82287 -11.80796 -11.50901 -11.39383 -11.30455 -10.77673 -10.64606 -9.90032 -9.42200 -9.04309 -8.28629 -6.30982 1.32648 1.33508 1.35075 1.44277 2.32741 2.61438 2.96166 3.04576 3.30817 3.82434 3.92723 3.99522 4.02313 4.07610 4.16465 4.20804 4.29700 4.35601 4.36128 4.43566 4.51488 4.61125 4.66446 4.72593 4.74858 4.79226 4.82450 4.86394 4.89326 4.91644 4.95837 4.99198 5.05377 5.09754 5.14069 5.19668 5.26067 5.55067 5.77022 5.84161 5.95565 6.01584 6.05752 6.17832 6.36062 6.64424 6.75461 7.32219 8.88228 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.005658 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.304846 B = 4947.959323 C = 7326.981249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.069 4.069 5 C 0.077 3.923 6 N -0.543 5.543 7 C 0.171 3.829 8 C -0.510 4.510 9 H 0.035 0.965 10 C 0.010 3.990 11 N -0.948 5.948 12 Si 0.941 3.059 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.252 1.252 16 C 0.060 3.940 17 C 0.067 3.933 18 N -0.541 5.541 19 C 0.011 3.989 20 C 0.065 3.935 21 O -0.404 6.404 22 C 0.068 3.932 23 C 0.015 3.985 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.049 0.951 33 H -0.014 1.014 34 H 0.032 0.968 35 H 0.266 0.734 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.089 0.911 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.486 7.523 11.477 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.107 4.107 5 C -0.051 4.051 6 N -0.267 5.267 7 C 0.044 3.956 8 C -0.549 4.549 9 H 0.054 0.946 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.765 3.235 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.176 1.176 16 C -0.068 4.068 17 C -0.061 4.061 18 N -0.267 5.267 19 C -0.117 4.117 20 C -0.012 4.012 21 O -0.323 6.323 22 C -0.009 4.009 23 C -0.113 4.113 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.004 0.996 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.134 0.866 46 H 0.107 0.893 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.496 7.258 11.457 20.593 hybrid contribution -0.640 -0.315 -1.136 1.342 sum 14.857 6.943 10.321 19.376 Atomic orbital electron populations 1.23807 0.95689 1.01901 1.02828 1.21916 0.95586 0.96198 0.99306 1.20864 1.00364 0.93338 1.02409 1.20583 1.00061 0.94184 0.95871 1.21854 0.98164 0.88269 0.96850 1.61798 1.16087 1.22722 1.26087 1.19990 0.95712 0.93915 0.85973 1.21229 0.94591 1.40465 0.98590 0.94648 1.25794 0.97585 0.94813 1.00536 1.70052 1.20697 1.44619 1.23493 0.85804 0.79683 0.79793 0.78230 1.18921 1.20743 1.17628 1.22183 0.88146 0.96279 1.00225 1.21989 0.87163 0.97279 0.99696 1.62295 1.20988 1.08293 1.35162 1.22956 0.98507 0.97630 0.92651 1.22797 0.92149 0.84900 1.01337 1.87942 1.84803 1.20267 1.39250 1.22747 0.93915 0.93122 0.91133 1.22857 0.97448 0.91044 0.99969 0.90149 0.86821 0.91516 0.90574 0.90867 0.92659 0.90248 0.94813 0.93247 0.99617 0.95028 0.92499 0.89268 0.94927 0.91735 0.95016 0.94556 0.88430 0.86475 0.91908 0.91865 0.86566 0.89260 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.72 13.89 67.77 0.94 -4.78 16 2 C -0.13 -3.51 5.31 -16.50 -0.09 -3.59 16 3 C -0.11 -2.29 10.03 71.24 0.71 -1.58 16 4 C -0.07 -2.13 5.42 29.85 0.16 -1.97 16 5 C 0.08 2.88 4.81 86.30 0.41 3.29 16 6 N -0.54 -22.01 4.39 -900.76 -3.95 -25.96 16 7 C 0.17 8.19 3.68 85.56 0.31 8.50 16 8 C -0.51 -29.68 8.85 25.60 0.23 -29.45 16 9 H 0.04 2.32 8.02 -2.91 -0.02 2.29 16 10 C 0.01 0.58 5.47 84.66 0.46 1.05 16 11 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 12 Si 0.94 44.30 27.54 68.60 1.89 46.19 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.25 -11.19 6.44 99.48 0.64 -10.55 16 16 C 0.06 1.90 4.06 86.30 0.35 2.25 16 17 C 0.07 2.09 5.24 86.30 0.45 2.54 16 18 N -0.54 -13.96 4.87 -895.20 -4.36 -18.33 16 19 C 0.01 0.23 4.94 86.31 0.43 0.65 16 20 C 0.06 1.19 7.01 72.02 0.50 1.69 16 21 O -0.40 -8.82 10.83 -148.98 -1.61 -10.44 16 22 C 0.07 1.28 7.01 72.01 0.50 1.78 16 23 C 0.02 0.34 5.63 86.31 0.49 0.83 16 24 H 0.08 2.52 7.99 -2.91 -0.02 2.50 16 25 H 0.11 2.62 8.04 -2.91 -0.02 2.59 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 28 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.05 1.91 7.99 -2.39 -0.02 1.90 16 30 H 0.08 2.07 6.85 -2.38 -0.02 2.05 16 31 H 0.03 1.17 8.01 -2.39 -0.02 1.15 16 32 H 0.05 2.24 7.09 -2.39 -0.02 2.23 16 33 H -0.01 -0.67 6.85 -2.38 -0.02 -0.69 16 34 H 0.03 1.49 5.56 -2.39 -0.01 1.48 16 35 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 36 H 0.09 2.43 4.80 -2.39 -0.01 2.42 16 37 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 38 H 0.06 2.26 6.28 -2.38 -0.01 2.25 16 39 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 1.94 6.05 -2.39 -0.01 1.93 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 47 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.71 362.89 -1.03 -68.74 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.84 Total: 17.91 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.87 Total: -18.77 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -8.02 Total: -103.64 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.61 Total: -10.44 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.89 Total: 46.19 kcal Total: -67.71 -1.03 -68.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352011429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.340 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds