Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47475 * 2 1 4 4 C 1.53005 * 109.46961 * 239.99937 * 2 1 3 5 5 C 1.52996 * 109.47308 * 120.00092 * 2 1 3 6 6 H 1.08997 * 109.50233 * 179.97438 * 5 2 1 7 7 C 1.53045 * 109.49619 * 59.93376 * 5 2 1 8 8 C 1.53041 * 109.53958 * 178.65421 * 7 5 2 9 9 C 1.53191 * 109.31450 * 61.36174 * 8 7 5 10 10 N 1.46933 * 108.77660 * 305.36872 * 9 8 7 11 11 C 1.34776 * 120.62958 * 233.58158 * 10 9 8 12 12 O 1.21590 * 119.99493 * 174.76847 * 11 10 9 13 13 N 1.34773 * 120.00006 * 354.77899 * 11 10 9 14 14 C 1.46498 * 119.99894 * 184.98056 * 13 11 10 15 15 C 1.53004 * 109.47467 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47178 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00067 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99537 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99680 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47271 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47169 * 119.99822 * 20 18 16 23 23 H 1.48505 * 109.47148 * 240.00147 * 20 18 16 24 24 C 1.46922 * 118.73608 * 53.60781 * 10 9 8 25 25 H 1.08997 * 109.47104 * 300.00106 * 1 2 3 26 26 H 1.09008 * 109.47291 * 59.99593 * 1 2 3 27 27 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47324 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47193 * 300.00467 * 3 2 1 30 30 H 1.08997 * 109.47041 * 59.99855 * 3 2 1 31 31 H 1.08998 * 109.47177 * 300.00131 * 4 2 1 32 32 H 1.09008 * 109.46734 * 60.00128 * 4 2 1 33 33 H 1.08996 * 109.47252 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.45671 * 298.67361 * 7 5 2 35 35 H 1.09001 * 109.46362 * 58.62999 * 7 5 2 36 36 H 1.08999 * 109.50154 * 181.31365 * 8 7 5 37 37 H 1.09006 * 109.49303 * 301.38151 * 8 7 5 38 38 H 1.08998 * 109.58695 * 65.15205 * 9 8 7 39 39 H 1.09003 * 109.59078 * 185.58248 * 9 8 7 40 40 H 0.96997 * 120.00543 * 4.96992 * 13 11 10 41 41 H 1.09003 * 109.46976 * 299.99244 * 14 13 11 42 42 H 1.09004 * 109.47502 * 59.99211 * 14 13 11 43 43 H 1.09003 * 109.46707 * 299.99778 * 15 14 13 44 44 H 1.08997 * 109.46879 * 59.99607 * 15 14 13 45 45 H 0.96994 * 119.99666 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58142 * 186.60678 * 24 10 9 47 47 H 1.09001 * 109.59237 * 66.18066 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1300 -0.7219 1.2494 7 6 1.5288 -2.1638 1.2506 8 6 2.0659 -2.8960 2.4825 9 6 1.5547 -2.2006 3.7481 10 7 1.9175 -0.7781 3.6856 11 6 2.5940 -0.1970 4.6961 12 8 2.9715 0.9541 4.5922 13 7 2.8522 -0.8919 5.8217 14 6 3.4903 -0.2290 6.9616 15 6 3.6683 -1.2336 8.1018 16 6 4.3253 -0.5518 9.2742 17 1 4.5899 0.4935 9.2121 18 6 4.5886 -1.2624 10.4260 19 7 4.2669 -2.5354 10.5013 20 14 5.4036 -0.4175 11.8790 21 1 5.6641 1.0052 11.5420 22 1 4.5073 -0.4907 13.0607 23 1 6.6880 -1.0953 12.1891 24 6 1.5284 -0.0013 2.5009 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 0.4391 -2.1628 1.2751 35 1 1.8711 -2.6713 0.3487 36 1 1.7206 -3.9297 2.4707 37 1 3.1558 -2.8762 2.4710 38 1 0.4707 -2.2989 3.8065 39 1 2.0128 -2.6563 4.6260 40 1 2.6155 -1.8309 5.8771 41 1 4.4649 0.1549 6.6598 42 1 2.8635 0.5964 7.2995 43 1 2.6936 -1.6171 8.4035 44 1 4.2949 -2.0591 7.7641 45 1 4.4519 -3.0352 11.3118 46 1 1.9692 0.9941 2.5557 47 1 0.4422 0.0798 2.4575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354238265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = -56.632213 kcal Electronic energy + Delta-G solvation = -23057.778595 eV Core-core repulsion = 19853.488723 eV Total energy + Delta-G solvation = -3204.289872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46677 -38.72360 -35.96166 -34.84018 -32.86011 -32.31837 -30.42100 -29.15946 -27.75123 -27.56439 -25.35450 -24.31750 -23.37812 -21.44302 -20.90252 -19.39435 -18.56319 -17.83735 -16.44598 -15.87515 -15.45902 -14.94047 -14.77911 -14.61496 -14.47378 -14.30330 -13.98845 -13.70356 -13.40392 -13.12899 -13.05916 -12.75223 -12.32565 -12.23776 -12.09137 -11.93551 -11.77805 -11.35632 -11.26026 -11.06658 -11.03525 -10.97735 -10.66323 -10.59999 -10.45498 -10.29200 -10.24775 -9.81552 -9.50427 -9.21960 -8.64847 -8.43159 -8.11178 -6.07615 -4.09895 2.97343 3.29799 3.37329 3.42992 3.60023 4.24838 4.42152 4.48266 4.51687 4.57386 4.79651 4.87497 4.93329 5.09301 5.23043 5.26599 5.29619 5.38087 5.42074 5.48154 5.51378 5.58001 5.67103 5.70290 5.73235 5.75469 5.80586 5.88186 5.89737 5.94575 6.04259 6.09334 6.23360 6.30867 6.34297 6.43667 6.69906 6.80854 7.05536 7.25578 7.58767 7.65746 7.91993 8.28005 8.42929 8.95322 9.04215 9.54778 11.04184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.003007 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.960997 B = 9310.855772 C = 9759.307874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.092 4.092 6 H 0.074 0.926 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.111 3.889 10 N -0.635 5.635 11 C 0.702 3.298 12 O -0.597 6.597 13 N -0.740 5.740 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.132 3.868 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.094 0.906 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -0.854 -23.001 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.199 4.199 5 C -0.111 4.111 6 H 0.092 0.908 7 C -0.153 4.153 8 C -0.174 4.174 9 C -0.013 4.013 10 N -0.373 5.373 11 C 0.404 3.596 12 O -0.476 6.476 13 N -0.395 5.395 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.009 3.991 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.228 0.772 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.221 -0.130 -22.890 24.322 hybrid contribution 0.343 -0.253 0.897 0.993 sum -7.878 -0.383 -21.993 23.364 Atomic orbital electron populations 1.22007 0.94665 1.01896 1.01804 1.20492 0.95640 0.95508 0.94568 1.21943 1.01251 0.95253 1.01875 1.21914 1.01007 1.00254 0.96709 1.21563 1.00845 0.94896 0.93804 0.90778 1.21678 1.00793 0.95089 0.97766 1.21932 1.01572 0.99135 0.94755 1.21600 1.00014 0.81199 0.98472 1.47275 1.60388 1.10201 1.19439 1.15976 0.78697 0.84746 0.80223 1.90864 1.58113 1.17163 1.81503 1.45705 1.65482 1.13850 1.14474 1.21586 0.95890 0.96636 0.84244 1.19324 0.97583 0.94106 0.91436 1.21097 1.39561 0.96901 0.98199 0.92162 1.24999 0.95714 0.94868 0.98772 1.69967 1.47703 1.07731 1.27993 0.86458 0.79060 0.79819 0.82240 1.19561 1.20955 1.20958 1.21578 0.98992 0.96040 0.82500 0.92230 0.92857 0.92354 0.92553 0.92801 0.92094 0.92388 0.92816 0.92723 0.91543 0.91541 0.90795 0.91451 0.91597 0.90199 0.77250 0.92778 0.92898 0.96024 0.96031 0.92942 0.88810 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.78 37.16 0.29 -0.77 16 2 C -0.06 -0.49 0.57 -154.51 -0.09 -0.58 16 3 C -0.15 -1.26 8.13 37.16 0.30 -0.96 16 4 C -0.14 -1.01 8.12 37.16 0.30 -0.70 16 5 C -0.09 -0.89 1.70 -90.50 -0.15 -1.04 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -0.95 4.46 -26.69 -0.12 -1.07 16 8 C -0.14 -1.22 6.08 -26.61 -0.16 -1.39 16 9 C 0.11 1.21 6.39 -3.71 -0.02 1.19 16 10 N -0.63 -8.98 2.97 -178.50 -0.53 -9.51 16 11 C 0.70 13.13 8.29 -86.92 -0.72 12.40 16 12 O -0.60 -13.37 15.77 5.29 0.08 -13.28 16 13 N -0.74 -13.88 5.46 -65.22 -0.36 -14.23 16 14 C 0.14 3.10 5.62 -4.04 -0.02 3.07 16 15 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.13 1.60 4.98 -3.71 -0.02 1.59 16 25 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 26 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.06 0.39 6.46 -51.93 -0.34 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 31 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 35 H 0.07 0.49 6.36 -51.93 -0.33 0.16 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.89 5.65 -51.93 -0.29 0.59 16 40 H 0.39 6.44 5.96 -40.82 -0.24 6.20 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.09 1.34 5.61 -51.93 -0.29 1.05 16 47 H 0.06 0.68 6.18 -51.93 -0.32 0.36 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -31.93 354.04 -8.91 -40.84 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.19 Total: 1.32 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.97 Total: -1.44 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.15 Total: -49.32 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -8.91 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354238265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.788 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds