Wall clock time and date at job start Tue Mar 31 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.52994 * 109.46974 * 239.99845 * 2 1 3 5 5 C 1.53008 * 109.47174 * 119.99908 * 2 1 3 6 6 H 1.08999 * 109.51827 * 180.02562 * 5 2 1 7 7 C 1.53073 * 109.61929 * 300.10464 * 5 2 1 8 8 C 1.53041 * 109.65613 * 181.17068 * 7 5 2 9 9 C 1.53199 * 109.31313 * 298.70265 * 8 7 5 10 10 N 1.46925 * 108.77562 * 54.63407 * 9 8 7 11 11 C 1.34776 * 120.63053 * 126.41512 * 10 9 8 12 12 O 1.21582 * 119.99896 * 174.94042 * 11 10 9 13 13 N 1.34777 * 119.99843 * 354.93961 * 11 10 9 14 14 C 1.46497 * 119.99973 * 185.07392 * 13 11 10 15 15 C 1.52997 * 109.47493 * 179.97438 * 14 13 11 16 16 C 1.50689 * 109.47349 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00481 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00230 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00306 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47376 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47388 * 119.99928 * 20 18 16 23 23 H 1.48501 * 109.47364 * 239.99944 * 20 18 16 24 24 C 1.46924 * 118.73744 * 306.39097 * 10 9 8 25 25 H 1.09004 * 109.46742 * 299.99674 * 1 2 3 26 26 H 1.08996 * 109.46946 * 60.00252 * 1 2 3 27 27 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47005 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46653 * 299.99984 * 3 2 1 30 30 H 1.08993 * 109.47278 * 59.99825 * 3 2 1 31 31 H 1.08998 * 109.47464 * 299.99589 * 4 2 1 32 32 H 1.08996 * 109.47363 * 60.00158 * 4 2 1 33 33 H 1.09003 * 109.47251 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.34575 * 61.15165 * 7 5 2 35 35 H 1.08993 * 109.44722 * 301.25247 * 7 5 2 36 36 H 1.08996 * 109.50055 * 178.75160 * 8 7 5 37 37 H 1.08997 * 109.52573 * 58.66486 * 8 7 5 38 38 H 1.09007 * 109.58396 * 294.84459 * 9 8 7 39 39 H 1.09002 * 109.70206 * 174.49464 * 9 8 7 40 40 H 0.96995 * 119.99714 * 5.07108 * 13 11 10 41 41 H 1.09002 * 109.47105 * 299.99845 * 14 13 11 42 42 H 1.09006 * 109.47104 * 59.99560 * 14 13 11 43 43 H 1.09002 * 109.46895 * 300.00068 * 15 14 13 44 44 H 1.09002 * 109.46928 * 59.99350 * 15 14 13 45 45 H 0.97004 * 119.99739 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58551 * 173.39491 * 24 10 9 47 47 H 1.09003 * 109.59284 * 293.67936 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2493 6 1 3.1301 -0.7213 1.2503 7 6 1.5295 -0.0038 2.5014 8 6 2.0631 -0.7073 3.7514 9 6 1.5503 -2.1507 3.7783 10 7 1.9153 -2.8059 2.5149 11 6 2.5907 -3.9722 2.5164 12 8 2.8066 -4.5510 1.4692 13 7 3.0266 -4.4970 3.6787 14 6 3.8554 -5.7050 3.6718 15 6 4.2121 -6.0871 5.1097 16 6 5.0641 -7.3300 5.1026 17 1 5.3255 -7.8003 4.1661 18 6 5.5101 -7.8670 6.2916 19 7 5.1923 -7.2941 7.4320 20 14 6.5668 -9.4073 6.2828 21 1 6.7807 -9.8529 4.8824 22 1 7.8779 -9.1119 6.9145 23 1 5.8814 -10.4823 7.0444 24 6 1.5297 -2.1657 1.2500 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.4398 -0.0245 2.5104 35 1 1.8731 1.0305 2.4924 36 1 1.7163 -0.1814 4.6409 37 1 3.1529 -0.7089 3.7314 38 1 0.4660 -2.1512 3.8903 39 1 2.0039 -2.6864 4.6122 40 1 2.7917 -4.0748 4.5198 41 1 3.3041 -6.5212 3.2047 42 1 4.7696 -5.5153 3.1092 43 1 4.7636 -5.2708 5.5763 44 1 3.2982 -6.2766 5.6726 45 1 5.5057 -7.6721 8.2686 46 1 1.9719 -2.7098 0.4154 47 1 0.4439 -2.1696 1.1544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354238267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:05 Heat of formation + Delta-G solvation = -56.401192 kcal Electronic energy + Delta-G solvation = -23080.494962 eV Core-core repulsion = 19876.215108 eV Total energy + Delta-G solvation = -3204.279854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46469 -38.72379 -35.96189 -34.84457 -32.85681 -32.31379 -30.42349 -29.16201 -27.75028 -27.56555 -25.35521 -24.31989 -23.37795 -21.44224 -20.90201 -19.39134 -18.56102 -17.84404 -16.44758 -15.87293 -15.41704 -14.96495 -14.82198 -14.62601 -14.46296 -14.29478 -13.97664 -13.69294 -13.41403 -13.16677 -13.05661 -12.68696 -12.34095 -12.23789 -12.09280 -11.93428 -11.77658 -11.35517 -11.25990 -11.06534 -11.03163 -10.97645 -10.66477 -10.59768 -10.45283 -10.29555 -10.25251 -9.82006 -9.50315 -9.21995 -8.64947 -8.43171 -8.11064 -6.07637 -4.09894 2.96999 3.29768 3.37322 3.42980 3.60396 4.24180 4.42099 4.49195 4.51294 4.56791 4.80138 4.87694 4.93361 5.08970 5.23101 5.26533 5.29605 5.38193 5.42239 5.48238 5.51540 5.58075 5.67034 5.70437 5.73845 5.75291 5.81089 5.88057 5.90204 5.94495 6.04418 6.09790 6.23199 6.30574 6.34459 6.43681 6.69919 6.80850 7.05538 7.25478 7.58736 7.65720 7.91962 8.28026 8.42918 8.95291 9.04142 9.54764 11.04146 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.003047 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.481142 B = 9187.261522 C = 9585.503731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.092 4.092 6 H 0.074 0.926 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.111 3.889 10 N -0.635 5.635 11 C 0.702 3.298 12 O -0.597 6.597 13 N -0.740 5.740 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.133 3.867 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.093 0.907 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 19.318 -10.727 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.062 4.062 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.111 4.111 6 H 0.092 0.908 7 C -0.153 4.153 8 C -0.174 4.174 9 C -0.013 4.013 10 N -0.373 5.373 11 C 0.404 3.596 12 O -0.476 6.476 13 N -0.395 5.395 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.009 3.991 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.228 0.772 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.111 0.889 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.080 18.822 -11.298 24.156 hybrid contribution 0.489 -0.568 0.665 1.002 sum -9.592 18.253 -10.633 23.200 Atomic orbital electron populations 1.22008 0.94663 1.02064 1.01638 1.20488 0.95646 0.95344 0.94698 1.21911 1.01021 0.95347 1.01606 1.21946 1.01247 1.00592 0.96566 1.21573 1.00851 0.94647 0.94077 0.90791 1.21671 1.00786 0.99091 0.93744 1.21928 1.01651 0.95429 0.98394 1.21602 0.99920 0.93359 0.86414 1.47268 1.60569 1.22671 1.06783 1.15974 0.78399 0.80459 0.84797 1.90863 1.63622 1.61936 1.31212 1.45709 1.55877 1.31401 1.06553 1.21584 0.92226 0.83422 1.01119 1.19320 0.97097 0.97021 0.89002 1.21095 1.31611 1.10151 0.92901 0.92166 1.25000 0.96336 0.97524 0.95495 1.69970 1.45744 1.40239 0.97433 0.86458 0.80035 0.82838 0.78244 1.19561 1.20959 1.20956 1.21562 0.99150 0.91936 0.86403 0.92358 0.92848 0.92226 0.92708 0.92816 0.92379 0.92081 0.92780 0.92557 0.91572 0.91534 0.90795 0.91368 0.91643 0.90179 0.77241 0.92753 0.92933 0.96043 0.96018 0.92945 0.88894 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.78 37.16 0.29 -0.77 16 2 C -0.06 -0.49 0.57 -154.51 -0.09 -0.58 16 3 C -0.14 -1.01 8.13 37.16 0.30 -0.71 16 4 C -0.15 -1.26 8.13 37.15 0.30 -0.96 16 5 C -0.09 -0.89 1.70 -90.48 -0.15 -1.04 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -0.95 4.47 -26.67 -0.12 -1.07 16 8 C -0.14 -1.23 6.09 -26.61 -0.16 -1.39 16 9 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 10 N -0.63 -8.99 2.97 -178.49 -0.53 -9.52 16 11 C 0.70 13.14 8.30 -86.92 -0.72 12.42 16 12 O -0.60 -13.38 15.79 5.29 0.08 -13.30 16 13 N -0.74 -13.88 5.47 -65.23 -0.36 -14.24 16 14 C 0.14 3.10 5.62 -4.05 -0.02 3.08 16 15 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 17 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.13 1.61 4.95 -3.71 -0.02 1.60 16 25 H 0.06 0.39 6.46 -51.93 -0.34 0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 6.42 -51.93 -0.33 0.05 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 35 H 0.07 0.49 6.38 -51.93 -0.33 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.08 0.89 5.56 -51.93 -0.29 0.60 16 40 H 0.39 6.44 5.93 -40.82 -0.24 6.20 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.09 1.33 5.65 -51.93 -0.29 1.04 16 47 H 0.06 0.68 6.17 -51.93 -0.32 0.36 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -31.93 354.04 -8.91 -40.85 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.19 Total: 1.33 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.97 Total: -1.44 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.15 Total: -49.33 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -8.91 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354238267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.555 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds