Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47209 * 2 1 4 4 C 1.52999 * 109.46701 * 119.99951 * 2 1 3 5 5 H 1.08998 * 109.47244 * 62.18146 * 4 2 1 6 6 C 1.50699 * 109.47342 * 302.17814 * 4 2 1 7 7 O 1.21288 * 119.99981 * 273.19213 * 6 4 2 8 8 N 1.34773 * 120.00082 * 93.18932 * 6 4 2 9 9 C 1.46494 * 119.99693 * 5.30662 * 8 6 4 10 10 C 1.46505 * 120.00043 * 185.02961 * 8 6 4 11 11 C 1.50696 * 109.47151 * 270.27882 * 10 8 6 12 12 H 1.08002 * 119.99671 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00039 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00080 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99991 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47551 * 89.99774 * 15 13 11 17 17 H 1.48507 * 109.47106 * 209.99518 * 15 13 11 18 18 H 1.48500 * 109.47315 * 329.99707 * 15 13 11 19 19 N 1.46910 * 109.46861 * 182.17886 * 4 2 1 20 20 C 1.46848 * 110.99721 * 304.21091 * 19 4 2 21 21 C 1.53039 * 109.51879 * 174.15961 * 20 19 4 22 22 C 1.53114 * 109.28248 * 59.17622 * 21 20 19 23 23 C 1.53120 * 109.16100 * 302.34683 * 22 21 20 24 24 C 1.46843 * 111.00054 * 179.97438 * 19 4 2 25 25 H 1.08994 * 109.46857 * 298.27680 * 1 2 3 26 26 H 1.09002 * 109.47110 * 58.27893 * 1 2 3 27 27 H 1.08998 * 109.47073 * 178.27534 * 1 2 3 28 28 H 1.08999 * 109.46654 * 239.99514 * 2 1 3 29 29 H 1.08995 * 109.47392 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47005 * 299.99796 * 3 2 1 31 31 H 1.09001 * 109.47415 * 59.99453 * 3 2 1 32 32 H 1.09005 * 109.47450 * 274.43182 * 9 8 6 33 33 H 1.08997 * 109.47491 * 34.43521 * 9 8 6 34 34 H 1.09006 * 109.47208 * 154.43580 * 9 8 6 35 35 H 1.09004 * 109.46766 * 30.27508 * 10 8 6 36 36 H 1.09002 * 109.46990 * 150.27670 * 10 8 6 37 37 H 0.96997 * 120.00565 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46084 * 294.17539 * 20 19 4 39 39 H 1.09000 * 109.46378 * 54.14681 * 20 19 4 40 40 H 1.09005 * 109.50090 * 299.23399 * 21 20 19 41 41 H 1.08998 * 109.50033 * 179.11961 * 21 20 19 42 42 H 1.08997 * 109.52793 * 182.43600 * 22 21 20 43 43 H 1.09007 * 109.57339 * 62.28175 * 22 21 20 44 44 H 1.08998 * 109.50310 * 297.71226 * 23 22 21 45 45 H 1.09005 * 109.53315 * 177.60969 * 23 22 21 46 46 H 1.08996 * 109.46313 * 305.85890 * 24 19 4 47 47 H 1.08998 * 109.46082 * 65.83880 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7089 -1.7596 1.2299 6 6 1.4940 -0.0427 2.4791 7 8 2.0831 0.9005 2.9633 8 7 0.3512 -0.4839 3.0409 9 6 -0.2983 -1.6926 2.5277 10 6 -0.2384 0.2417 4.1689 11 6 0.3169 -0.3007 5.4605 12 1 1.0366 -1.1057 5.4430 13 6 -0.0946 0.2301 6.6646 14 7 -0.9714 1.2101 6.6859 15 14 0.5931 -0.4427 8.2657 16 1 1.8174 0.3123 8.6348 17 1 -0.4213 -0.2965 9.3405 18 1 0.9300 -1.8789 8.0951 19 7 3.5081 -0.6758 1.2759 20 6 4.0745 -1.2397 0.0440 21 6 5.5923 -1.0441 0.0427 22 6 6.1927 -1.7395 1.2676 23 6 5.5509 -1.1679 2.5349 24 6 4.0343 -1.3595 2.4642 25 1 -0.3633 0.4868 0.9050 26 1 -0.3633 0.5403 -0.8742 27 1 -0.3633 -1.0272 -0.0309 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 -0.9445 -1.4301 1.6900 33 1 0.4613 -2.3990 2.1930 34 1 -0.8950 -2.1480 3.3181 35 1 0.0040 1.3012 4.0857 36 1 -1.3209 0.1145 4.1568 37 1 -1.2607 1.5838 7.5330 38 1 3.8453 -2.3041 -0.0070 39 1 3.6424 -0.7335 -0.8193 40 1 5.8220 0.0208 0.0797 41 1 6.0141 -1.4767 -0.8645 42 1 7.2685 -1.5662 1.2941 43 1 5.9976 -2.8105 1.2117 44 1 5.7800 -0.1050 2.6112 45 1 5.9432 -1.6884 3.4086 46 1 3.5730 -0.9404 3.3584 47 1 3.8056 -2.4234 2.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354875983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -36.895168 kcal Electronic energy + Delta-G solvation = -24517.729457 eV Core-core repulsion = 21314.295447 eV Total energy + Delta-G solvation = -3203.434010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18162 -37.98458 -35.44735 -34.74786 -32.53613 -32.32255 -30.69920 -28.29260 -26.91800 -26.58542 -25.48550 -23.46331 -23.17261 -22.25104 -20.24613 -19.56712 -17.80382 -16.68587 -16.42695 -16.27182 -15.36881 -14.94561 -14.49577 -14.38985 -14.02523 -13.96568 -13.70407 -13.28916 -13.20007 -12.74671 -12.52052 -12.27878 -12.15688 -12.10219 -11.85820 -11.79951 -11.49503 -11.19522 -11.11320 -10.98266 -10.87337 -10.75384 -10.67193 -10.57792 -10.47784 -10.23686 -10.13813 -10.06579 -9.57804 -8.67596 -8.40931 -8.00156 -7.55111 -6.01620 -4.05932 3.32378 3.38068 3.39114 3.47132 3.80783 4.20684 4.47122 4.83729 4.85388 4.93733 5.03414 5.14214 5.17907 5.32318 5.32915 5.41985 5.43864 5.51341 5.59415 5.65636 5.73632 5.76306 5.78254 5.88676 5.92057 5.98095 6.01139 6.04637 6.09666 6.18494 6.22625 6.24796 6.30391 6.35679 6.47888 6.52327 6.79137 7.03713 7.24438 7.30857 7.47264 7.60872 7.95218 8.26908 8.49841 8.94456 9.21719 9.59254 11.06330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.005835 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.714732 B = 4797.104175 C = 5861.781552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.079 4.079 3 C -0.140 4.140 4 C 0.068 3.932 5 H 0.053 0.947 6 C 0.515 3.485 7 O -0.517 6.517 8 N -0.604 5.604 9 C 0.078 3.922 10 C 0.248 3.752 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.511 5.511 20 C 0.052 3.948 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.113 4.113 24 C 0.054 3.946 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -7.121 -15.549 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.044 4.044 5 H 0.071 0.929 6 C 0.300 3.700 7 O -0.392 6.392 8 N -0.338 5.338 9 C -0.066 4.066 10 C 0.129 3.871 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.236 5.236 20 C -0.075 4.075 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.074 4.074 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.732 -5.995 -15.106 17.998 hybrid contribution -0.026 -1.406 0.970 1.708 sum 7.706 -7.401 -14.136 17.719 Atomic orbital electron populations 1.22089 0.94833 1.01774 1.02753 1.21056 0.95683 0.97719 0.95385 1.21752 1.02136 0.94409 1.01398 1.21849 0.88519 0.98437 0.95607 0.92924 1.19912 0.81081 0.84819 0.84176 1.90672 1.57219 1.28369 1.62924 1.48186 1.24467 1.26815 1.34305 1.21818 0.97494 0.87774 0.99526 1.19245 0.92971 0.92957 0.81923 1.21413 1.25026 1.18893 0.90779 0.92651 1.24920 0.95065 0.94966 0.99114 1.69927 1.31666 1.25427 1.26442 0.86534 0.78818 0.79231 0.83037 1.20547 1.21176 1.20020 1.61609 1.04320 1.55682 1.01968 1.22173 0.95313 0.96919 0.93139 1.21562 0.94466 1.01665 0.97522 1.21582 0.99496 0.99391 0.95298 1.21534 0.94376 1.02155 0.97045 1.22135 0.95724 0.95398 0.94142 0.91411 0.92486 0.92508 0.90950 0.91497 0.93919 0.91602 0.93246 0.93028 0.90836 0.94047 0.95152 0.92774 0.95460 0.90335 0.90990 0.91943 0.92130 0.92630 0.90826 0.91803 0.89503 0.95686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 7.52 37.16 0.28 -1.75 16 2 C -0.08 -1.08 2.22 -90.62 -0.20 -1.28 16 3 C -0.14 -2.08 8.60 37.16 0.32 -1.76 16 4 C 0.07 1.07 1.37 -68.86 -0.09 0.98 16 5 H 0.05 0.78 5.79 -51.93 -0.30 0.48 16 6 C 0.51 10.69 3.87 -10.99 -0.04 10.65 16 7 O -0.52 -13.00 14.44 5.55 0.08 -12.92 16 8 N -0.60 -12.80 2.22 -182.95 -0.41 -13.20 16 9 C 0.08 1.27 9.20 59.84 0.55 1.82 16 10 C 0.25 6.50 5.10 -5.19 -0.03 6.47 16 11 C -0.52 -14.89 9.38 -34.44 -0.32 -15.21 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 N -0.51 -7.82 3.43 -228.08 -0.78 -8.60 16 20 C 0.05 0.62 4.95 -3.83 -0.02 0.60 16 21 C -0.11 -1.21 6.09 -26.65 -0.16 -1.37 16 22 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 23 C -0.11 -1.52 6.09 -26.65 -0.16 -1.69 16 24 C 0.05 0.86 5.19 -3.84 -0.02 0.84 16 25 H 0.07 1.07 6.20 -51.93 -0.32 0.75 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 28 H 0.07 0.83 6.34 -51.93 -0.33 0.50 16 29 H 0.07 1.01 7.30 -51.93 -0.38 0.63 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.21 6.58 -51.93 -0.34 0.87 16 32 H 0.05 0.68 5.56 -51.93 -0.29 0.40 16 33 H 0.05 0.73 6.12 -51.93 -0.32 0.42 16 34 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.04 1.22 7.51 -51.93 -0.39 0.83 16 36 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.86 5.83 -51.93 -0.30 0.56 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.74 6.44 -51.93 -0.33 1.40 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -31.97 349.32 -8.55 -40.52 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.26 Total: -0.60 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.16 Total: -1.50 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.45 Total: -47.83 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.97 -8.55 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354875983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.629 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds